Rw0G002670
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00083
OG0000151
Physical Location & Seq
Forward (+)
44636 .. 46301
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002670.1

Sequence Viewer

Length: 651 bp
ATGGCAGCAGCAGAGGAAACCAGTAAGTCATCTGAAGCTTTTCCAATGAAAGGTGGAGATGGACCCAACAGCTATAAAAACTCCATATATCAGAGAGGAGCTGTGGATGTAGCTAAGCAACTTTTAGACAAGGAAATTGCAGAGAAGCTTGACATAGAAATCTCGTTACCTTCGAACACCTTTAACATTGCAGATTTGGGTTGCTCAGTTGGGCCTAATACATTTTCTTCAGTTGAAAACATACTCGAAGCTGTGCAGCTCAAGTATCAATGTCAAGGGCTGGATTCCCAAATCCCTGAATTTCAAGTTTTCTTTAATGATCACATCCTAAATGATTTTAACATGCTGTTCAAATCCCTCCCTCCAAACCGGCAATACTATGCCGCGGGCGTGCCAGGTTCTTTCTATGGTCGTATATTTCCTAATAATTCCATTCACTTGGTTCACTCTTCTTCTTCCAACCATTGGCTTTCCAGAGTGCCGAAAGAGGTAGTTGACAAAAACTATGCACTAATCAAGCAGCAATTTGGAGAAGAAATCTTGGATGAGCTGTTTGACTTGTACTGTAAGAAACTTGAAGAGAAGCCCTCCATCTTTGAGTCTGGGAAGGGAATTAACTTTCTTGCTGTTCTTAAACGCAAGCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

216

Amino Acids

24.22

Weight (kDa)

5.44

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 167 1.2e-47 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 465
AccII CGCG 1 cut(s) 386
AciI CCGC 2 cut(s) 384, 386
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 2 cut(s) 54, 213
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 50, 465
AgsI TTSAA 4 cut(s) 236, 305, 352, 578
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 8 cut(s) 38, 72, 101, 113, 148, 251, 259, 550
AluI AGCT 8 cut(s) 38, 72, 101, 113, 148, 251, 259, 550
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 4 cut(s) 5, 8, 256, 520
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 62, 212
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 17, 20, 268, 532
BccI CCATC 2 cut(s) 53, 599
BciT130I CCWGG 1 cut(s) 396
BclI TGATCA 1 cut(s) 319
BisI GCNGC 5 cut(s) 6, 9, 257, 384, 521
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 5 cut(s) 7, 10, 258, 385, 522
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 212
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 572, 604
Bpu1102I GCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 384
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 465
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 3 cut(s) 112, 324, 550
BseLI CCNNNNNNNGG 2 cut(s) 50, 465
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 4 cut(s) 17, 20, 268, 532
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 50, 465
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 173
Bsp143I GATC 1 cut(s) 319
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 2 cut(s) 384, 386
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 454, 573
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 388, 392, 641
BstDEI CTNAG 2 cut(s) 114, 205
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 112, 324, 550
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 394
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 4 cut(s) 17, 20, 268, 532
BstXI CCANNNNNNTGG 1 cut(s) 439
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 3 cut(s) 112, 324, 550
Cac8I GCNNGC 3 cut(s) 388, 392, 641
Cfr10I RCCGGY 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 62, 212
Cfr42I CCGCGG 1 cut(s) 387
Csp6I GTAC 1 cut(s) 562
CviAII CATG 1 cut(s) 343
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 114, 205
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 454, 573
EarI CTCTTC 2 cut(s) 454, 573
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 54, 213
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 346
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 5 cut(s) 6, 9, 257, 384, 521
FokI GGATG 3 cut(s) 119, 311, 557
Fsp4HI GCNGC 5 cut(s) 6, 9, 257, 384, 521
GluI GCNGC 5 cut(s) 6, 9, 257, 384, 521
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 370
Hin1II CATG 1 cut(s) 346
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 2 cut(s) 36, 146
HinfI GANTC 2 cut(s) 284, 599
HpaII CCGG 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 445, 496
Hpy188I TCNGA 2 cut(s) 34, 93
Hpy188III TCNNGA 1 cut(s) 474
Hpy8I GTNNAC 2 cut(s) 445, 496
HpyAV CCTTC 2 cut(s) 180, 601
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 4 cut(s) 140, 191, 256, 509
HpyF3I CTNAG 2 cut(s) 114, 205
Hsp92II CATG 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 319
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 34, 266, 309, 381, 383, 408, 487, 588
Lsp1109I GCAGC 4 cut(s) 17, 20, 268, 532
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 6 cut(s) 219, 441, 444, 447, 545, 590
MluCI AATT 6 cut(s) 135, 299, 427, 524, 612, 646
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 6 cut(s) 7, 89, 368, 372, 481, 598
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 5 cut(s) 183, 315, 339, 615, 633
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 386
NdeII GATC 1 cut(s) 319
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 346
NspV TTCGAA 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 465
PkrI GCNGC 5 cut(s) 7, 10, 258, 385, 522
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 212
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SacII CCGCGG 1 cut(s) 387
SaqAI TTAA 5 cut(s) 183, 315, 339, 615, 633
SatI GCNGC 5 cut(s) 6, 9, 257, 384, 521
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 62, 212
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 396
Sfr303I CCGCGG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 173
SgrBI CCGCGG 1 cut(s) 387
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 6 cut(s) 135, 299, 427, 524, 612, 646
SsiI CCGC 2 cut(s) 384, 386
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 173, 246
TasI AATT 6 cut(s) 135, 299, 427, 524, 612, 646
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 5 cut(s) 183, 315, 339, 615, 633
Tru9I TTAA 5 cut(s) 183, 315, 339, 615, 633
TseI GCWGC 4 cut(s) 5, 8, 256, 520
TspDTI ATGAA 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.