pycom09g16990

methyltransferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
17444112 .. 17445434
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16990.3

Sequence Viewer

Length: 771 bp
ATGGAGGATTCCAGTAATGTTTCTGAGGCATATCCAATGAATAGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCTACAGAACAGAGAGTAGTTGTTGATGCTACCAAAGAACTTCTAAGCAAGGCTATTAAAGAAAATCTTGAATTGGACATCTTTTTACCATTCAACAGCTTCCATATTGCAGATTTGGGTTGTTCGGTTGGGCCTAATACATTTTTTTCTGTTGAAAATATACTTGAAGCTGTGAAATTTGAGTATCAAAGCGGAGGGCCGAGTTCTGAAATCCCCGAATTTCAAGTTTTCTTCAGTGATAAAACCCTAAATGATTTTAACACACTCTTCAATTCCCTCCCTCTGAACAGGAACTATTATGCAGCGGGTGTGCCAGGTTCTTTCCACGGTCGCTTGTTTCCCAAGGCTTCCATTAACATTTTTCACTCTTCATTAGCCCTTCATTGGCTTTCTAGAGTACCAAAAGATGTAATGGACAAAAACAGTCGTGCTTGGAATAAAGGACGAATCCACTACTCAAATAACCACGACGAAGTATTGAAGGCATATCAAGCTCAATATGCCGAGGACATGGAGTGTTTCCTCCGTGCCAGAGCACTAGAGACTGTGCATCGAGGACTGATTGTGCTTAACCTATTAGGACGCCCTCTTAACTGTATTGAAATTGTGGGTTTTAACATTTTTGGATCTAGCCTCCTGGAGATGGCTAGGAAGAACTGGAAGTCATTGTGGAACGAAATGGATGCTTTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

5.66

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 380
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 2 cut(s) 251, 293
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 658
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 2 cut(s) 459, 718
AgsI TTSAA 8 cut(s) 146, 169, 230, 242, 299, 346, 556, 677
AjnI CCWGG 2 cut(s) 388, 711
AluBI AGCT 4 cut(s) 63, 174, 245, 569
AluI AGCT 4 cut(s) 63, 174, 245, 569
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 1 cut(s) 709
AoxI GGCC 3 cut(s) 52, 206, 272
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 251, 293
AspS9I GGNCC 3 cut(s) 53, 206, 272
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 44, 712
BcgI CGANNNNNNTGC 1 cut(s) 740
BciT130I CCWGG 2 cut(s) 390, 713
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 4 cut(s) 468, 614, 705, 723
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 390, 713
BmgT120I GGNCC 3 cut(s) 53, 206, 272
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 390, 713
BmsI GCATC 3 cut(s) 91, 634, 748
BpmI CTGGAG 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 400, 417, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 718
Bse1I ACTGG 2 cut(s) 12, 737
BseBI CCWGG 2 cut(s) 390, 713
BseDI CCNNGG 3 cut(s) 400, 417, 579
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 2 cut(s) 459, 718
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 12, 737
BseXI GCAGC 1 cut(s) 389
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 3 cut(s) 54, 208, 274
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 613
BslI CCNNNNNNNGG 2 cut(s) 459, 718
BsmAI GTCTC 1 cut(s) 611
BsnI GGCC 3 cut(s) 54, 208, 274
Bsp1286I GDGCHC 1 cut(s) 613
Bsp143I GATC 1 cut(s) 701
BspACI CCGC 2 cut(s) 267, 380
BspANI GGCC 3 cut(s) 54, 208, 274
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 709
BsrI ACTGG 2 cut(s) 12, 737
BssECI CCNNGG 3 cut(s) 400, 417, 579
BssMI GATC 1 cut(s) 701
BssNI GRCGYC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 390, 713
Bst4CI ACNGT 4 cut(s) 404, 500, 622, 671
Bst6I CTCTTC 2 cut(s) 347, 448
BstACI GRCGYC 1 cut(s) 658
BstDEI CTNAG 2 cut(s) 24, 119
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 1 cut(s) 763
BstKTI GATC 1 cut(s) 704
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 1 cut(s) 701
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 60, 566, 575
BstNI CCWGG 2 cut(s) 390, 713
BstSCI CCNGG 2 cut(s) 388, 711
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 701
BstYI RGATCY 1 cut(s) 701
BsuRI GGCC 3 cut(s) 54, 208, 274
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 763
BtsIMutI CAGTG 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 53, 206, 272
CseI GACGC 1 cut(s) 666
Csp6I GTAC 1 cut(s) 473
CviAII CATG 1 cut(s) 586
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 24, 119
DpnI GATC 1 cut(s) 703
DpnII GATC 1 cut(s) 701
Eam1104I CTCTTC 2 cut(s) 347, 448
EarI CTCTTC 2 cut(s) 347, 448
Eco130I CCWWGG 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 388, 711
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 1 cut(s) 589
FaiI YATR 9 cut(s) 31, 66, 180, 236, 375, 562, 576, 587, 769
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 1 cut(s) 585
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 4 cut(s) 468, 614, 705, 723
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 734
HaeIII GGCC 3 cut(s) 54, 208, 274
HgaI GACGC 1 cut(s) 666
Hin1I GRCGYC 1 cut(s) 658
Hin1II CATG 1 cut(s) 589
HinfI GANTC 2 cut(s) 8, 522
Hpy188I TCNGA 3 cut(s) 25, 283, 360
Hpy188III TCNNGA 2 cut(s) 143, 468
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 2 cut(s) 464, 550
HpyCH4III ACNGT 4 cut(s) 404, 500, 622, 671
HpyCH4V TGCA 3 cut(s) 185, 377, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 566, 575
HpyF3I CTNAG 2 cut(s) 24, 119
Hsp92I GRCGYC 1 cut(s) 658
Hsp92II CATG 1 cut(s) 589
Kzo9I GATC 1 cut(s) 701
LpnPI CCDG 8 cut(s) 25, 349, 375, 402, 619, 698, 718, 725
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 3 cut(s) 91, 634, 748
MaeI CTAG 4 cut(s) 468, 614, 705, 723
MalI GATC 1 cut(s) 703
MboI GATC 1 cut(s) 701
MboII GAAGA 4 cut(s) 298, 334, 435, 739
MflI RGATCY 1 cut(s) 701
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 5 cut(s) 146, 251, 293, 346, 678
MnlI CCTC 9 cut(s) 19, 263, 362, 366, 574, 608, 623, 672, 719
MseI TTAA 6 cut(s) 132, 333, 429, 645, 666, 690
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 390, 713
MvaI CCWGG 2 cut(s) 390, 713
MwoI GCNNNNNNNGC 3 cut(s) 60, 566, 575
NdeII GATC 1 cut(s) 701
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 2 cut(s) 300, 604
PfeI GAWTC 2 cut(s) 8, 522
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 388, 711
PspGI CCWGG 2 cut(s) 388, 711
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 53, 206, 272
PsuI RGATCY 1 cut(s) 701
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 6 cut(s) 132, 333, 429, 645, 666, 690
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 1 cut(s) 701
Sau96I GGNCC 3 cut(s) 53, 206, 272
ScrFI CCNGG 2 cut(s) 390, 713
SduI GDGCHC 1 cut(s) 613
SetI ASST 6 cut(s) 65, 176, 247, 394, 571, 651
SfaNI GCATC 3 cut(s) 91, 634, 748
SfcI CTRYAG 1 cut(s) 78
Sse9I AATT 5 cut(s) 146, 251, 293, 346, 678
SsiI CCGC 2 cut(s) 267, 380
SspMI CTAG 4 cut(s) 468, 614, 705, 723
StyD4I CCNGG 2 cut(s) 388, 711
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 4 cut(s) 404, 500, 622, 671
TaqI TCGA 1 cut(s) 628
TasI AATT 5 cut(s) 146, 251, 293, 346, 678
TfiI GAWTC 2 cut(s) 8, 522
Tru1I TTAA 6 cut(s) 132, 333, 429, 645, 666, 690
Tru9I TTAA 6 cut(s) 132, 333, 429, 645, 666, 690
TscAI CASTG 1 cut(s) 316
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 53, 435, 446
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 316
XapI RAATTY 2 cut(s) 251, 293
XbaI TCTAGA 1 cut(s) 467
XspI CTAG 4 cut(s) 468, 614, 705, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.