AT5G38780

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
15529778 .. 15531524
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38780.1

Sequence Viewer

Length: 1086 bp
ATGTCAACATCTTCTCAGTCGTACCCAATGAGTGGCGGCGATGATCAACACAGTTACATCCATAATTCCTCATACCAAAAAGCAGGCATAGATGGGGTTCAAGAAAAGGCAAGACAATACATTTTAGAAAACCTCGATCTCCTTAATATGAATCCCAATCTTAGTACTTTTACAATTGCAGATTTTGGTTGTTCTATTGGCCCTAACACTTTTCATGCTGTTCAAAATATCATTGATATTGTGAAACTTAAACACCTCAAAGAAAGCCAAGAAGATAGTCGTGTGGCGCCTCTCGAGTTCCAAGTTTACTTCAACGATCTACCGAACAATGACTTTAACACGCTCTTTAGGACTCAACCTCCTTCCTCCAAACAAGAATATTTCTCGGTTGGAGTTCCAGGTTCTTTCTATGGAAGGGTGTTACCAAGAAATAGCATCCACATCGGAAACACTTCCTTCACGACTCACTGGCTTTCAAAAGTTCCCGAAGAAGTTTGTGACAAGAACTCTCTAGCTTGGAACAAAAATTACATTCATTGTAATAATTTGATAGAAGAAGTTACCGAGGCTTACAAGGTCCAGTTCGAAAAAGACATGGGGGTCTTTCTTAAAGCTAGAGCCGAAGAACTTGTGCCTGGAGGATTGATGATCACATTAGGACAATGTTTGCCTGATGGTGTGGCCATGTATGAGACATGGTCAGGTATTGTGAAGGATACCATTGGTGATTGTCTTCAGGATATGGCCACTTTGGGAGTAACCACCGAGGAAAAGATCGAAATGTTCAACTTGCCCGTGTATTTTCCTCAAGTTAGTGAATTGAAAGGAGCGATTGAACAAAACATAAGGTTTACAATTGAGATGATGGAGATTGTAAGCCATCCATTGGAGGCTGTGCAATTATCCAACAACTTCATCACTTCCATGTATCGAGCAATTCTCTCTACAGTTATAGAAAGACACTTTGGAGGTAGTGTGGTAGATGAACTATTCCGTCAATTTGCTAAGAAACTCTCCGAGCACCCGATTGATTTTGAAAAGTGTAAGAAACAAATGGTCTATCATATCGTTCTTAAACGAAAGTGA

Protein Analysis

361

Amino Acids

41.01

Weight (kDa)

5.5

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 53 - 360 3.8e-103 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 286
AccB7I CCANNNNNTGG 2 cut(s) 32, 886
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 681, 744
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 2 cut(s) 23, 166
AfiI CCNNNNNNNGG 2 cut(s) 32, 886
AgsI TTSAA 8 cut(s) 101, 224, 313, 477, 787, 823, 836, 1037
AjnI CCWGG 2 cut(s) 397, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AluBI AGCT 2 cut(s) 515, 614
AluI AGCT 2 cut(s) 515, 614
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 199, 681, 744
Asp700I GAANNNNTTC 1 cut(s) 451
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 200, 577
AsuHPI GGTGA 1 cut(s) 737
AsuII TTCGAA 1 cut(s) 585
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 577
BalI TGGCCA 2 cut(s) 683, 746
BanI GGYRCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 1023
BccI CCATC 4 cut(s) 86, 668, 859, 888
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 2 cut(s) 399, 636
BciVI GTATCC 1 cut(s) 709
BclI TGATCA 2 cut(s) 43, 648
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 512, 615
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 290
BfuI GTATCC 1 cut(s) 709
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 399, 636
Bme18I GGWCC 1 cut(s) 577
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 200, 577
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 399, 636
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 725
BplI GAGNNNNNCTC 2 cut(s) 924, 956
BpmI CTGGAG 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 792
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 564, 765
BsaXI ACNNNNNCTCC 4 cut(s) 343, 373, 960, 990
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 886
Bse1I ACTGG 2 cut(s) 473, 580
BseBI CCWGG 2 cut(s) 399, 636
BseDI CCNNGG 2 cut(s) 564, 765
BseGI GGATG 3 cut(s) 57, 435, 880
BseLI CCNNNNNNNGG 2 cut(s) 32, 886
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 473, 580
BshFI GGCC 3 cut(s) 201, 683, 746
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 1023
BsiHKCI CYCGRG 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 32, 886
BsmAI GTCTC 1 cut(s) 686
BsnI GGCC 3 cut(s) 201, 683, 746
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 1023
Bsp143I GATC 5 cut(s) 43, 136, 316, 648, 774
BspACI CCGC 1 cut(s) 36
BspANI GGCC 3 cut(s) 201, 683, 746
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 286
BsrI ACTGG 2 cut(s) 473, 580
BssECI CCNNGG 2 cut(s) 564, 765
BssMI GATC 5 cut(s) 43, 136, 316, 648, 774
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 399, 636
Bst4CI ACNGT 2 cut(s) 53, 949
BstACI GRCGYC 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 15, 161, 1005
BstF5I GGATG 3 cut(s) 57, 435, 880
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 5 cut(s) 46, 139, 319, 651, 777
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 5 cut(s) 43, 136, 316, 648, 774
BstNI CCWGG 2 cut(s) 399, 636
BstSCI CCNGG 2 cut(s) 397, 634
BstSFI CTRYAG 1 cut(s) 945
BstV2I GAAGAC 1 cut(s) 725
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 3 cut(s) 201, 683, 746
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 57, 435, 880
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 200, 577
Csp6I GTAC 2 cut(s) 22, 165
CviAII CATG 5 cut(s) 215, 595, 685, 696, 925
CviQI GTAC 2 cut(s) 22, 165
DdeI CTNAG 3 cut(s) 15, 161, 1005
DinI GGCGCC 1 cut(s) 288
DpnI GATC 5 cut(s) 45, 138, 318, 650, 776
DpnII GATC 5 cut(s) 43, 136, 316, 648, 774
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 2 cut(s) 681, 744
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 397, 634
EgeI GGCGCC 1 cut(s) 288
EheI GGCGCC 1 cut(s) 288
FaeI CATG 5 cut(s) 218, 598, 688, 699, 928
FatI CATG 5 cut(s) 214, 594, 684, 695, 924
FbaI TGATCA 2 cut(s) 43, 648
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 3 cut(s) 44, 422, 867
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 512, 615
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 657
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 3 cut(s) 201, 683, 746
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 5 cut(s) 218, 598, 688, 699, 928
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 151, 352, 463
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 3 cut(s) 6, 307, 852
Hpy188I TCNGA 2 cut(s) 446, 1018
Hpy188III TCNNGA 5 cut(s) 101, 293, 460, 485, 737
Hpy8I GTNNAC 3 cut(s) 6, 307, 852
HpyAV CCTTC 4 cut(s) 372, 408, 466, 706
HpyCH4III ACNGT 2 cut(s) 53, 949
HpyCH4V TGCA 2 cut(s) 179, 898
HpyF3I CTNAG 3 cut(s) 15, 161, 1005
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 5 cut(s) 218, 598, 688, 699, 928
HspAI GCGC 1 cut(s) 287
KasI GGCGCC 1 cut(s) 286
Ksp22I TGATCA 2 cut(s) 43, 648
Kzo9I GATC 5 cut(s) 43, 136, 316, 648, 774
LmnI GCTCC 1 cut(s) 827
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 512, 615
MaeIII GTNAC 5 cut(s) 53, 420, 497, 559, 757
MalI GATC 5 cut(s) 45, 138, 318, 650, 776
MboI GATC 5 cut(s) 43, 136, 316, 648, 774
MboII GAAGA 6 cut(s) 3, 284, 500, 566, 635, 725
MfeI CAATTG 2 cut(s) 174, 855
MhlI GDGCHC 1 cut(s) 1023
MlsI TGGCCA 2 cut(s) 683, 746
MluCI AATT 9 cut(s) 64, 174, 526, 544, 818, 855, 899, 936, 998
MluNI TGGCCA 2 cut(s) 683, 746
Mly113I GGCGCC 1 cut(s) 287
MlyI GAGTC 2 cut(s) 346, 457
MmeI TCCRAC 2 cut(s) 370, 930
Mox20I TGGCCA 2 cut(s) 683, 746
MroXI GAANNNNTTC 1 cut(s) 451
MscI TGGCCA 2 cut(s) 683, 746
MseI TTAA 5 cut(s) 144, 249, 336, 609, 1074
MslI CAYNNNNRTG 1 cut(s) 923
Msp20I TGGCCA 2 cut(s) 683, 746
MspR9I CCNGG 2 cut(s) 399, 636
MunI CAATTG 2 cut(s) 174, 855
MvaI CCWGG 2 cut(s) 399, 636
NarI GGCGCC 1 cut(s) 287
NdeII GATC 5 cut(s) 43, 136, 316, 648, 774
NlaIII CATG 5 cut(s) 218, 598, 688, 699, 928
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 497
NspV TTCGAA 1 cut(s) 585
PaeR7I CTCGAG 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 151
PflFI GACNNNGTC 1 cut(s) 697
PflMI CCANNNNNTGG 2 cut(s) 32, 886
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 2 cut(s) 346, 457
PluTI GGCGCC 1 cut(s) 290
PpsI GAGTC 2 cut(s) 346, 457
Psp6I CCWGG 2 cut(s) 397, 634
PspGI CCWGG 2 cut(s) 397, 634
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 200, 577
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PsyI GACNNNGTC 1 cut(s) 697
RsaI GTAC 2 cut(s) 23, 166
RsaNI GTAC 2 cut(s) 22, 165
RseI CAYNNNNRTG 1 cut(s) 923
SaqAI TTAA 5 cut(s) 144, 249, 336, 609, 1074
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 5 cut(s) 43, 136, 316, 648, 774
Sau96I GGNCC 2 cut(s) 200, 577
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 2 cut(s) 346, 457
ScrFI CCNGG 2 cut(s) 399, 636
SduI GDGCHC 1 cut(s) 1023
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 945
SfoI GGCGCC 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 577
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 293, 807
SmoI CTYRAG 2 cut(s) 293, 807
Sse9I AATT 9 cut(s) 64, 174, 526, 544, 818, 855, 899, 936, 998
SsiI CCGC 1 cut(s) 36
SspDI GGCGCC 1 cut(s) 286
SspI AATATT 1 cut(s) 380
SspMI CTAG 2 cut(s) 512, 615
StyD4I CCNGG 2 cut(s) 397, 634
TaaI ACNGT 2 cut(s) 53, 949
TaqI TCGA 5 cut(s) 135, 294, 585, 777, 931
TasI AATT 9 cut(s) 64, 174, 526, 544, 818, 855, 899, 936, 998
TatI WGTACW 1 cut(s) 164
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 5 cut(s) 144, 249, 336, 609, 1074
Tru9I TTAA 5 cut(s) 144, 249, 336, 609, 1074
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 5 cut(s) 164, 203, 524, 904, 999
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 1 cut(s) 473
Tth111I GACNNNGTC 1 cut(s) 697
Van91I CCANNNNNTGG 2 cut(s) 32, 886
VpaK11BI GGWCC 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 2 cut(s) 512, 615
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.