Rmu_sc0002026.1_g000019

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002026.1
OG0000151
Physical Location & Seq
Forward (+)
94226 .. 94930
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002026.1_g000019.1.cds

Sequence Viewer

Length: 705 bp
atggagtctgttaaagaacttgttaccaaaggaattgcagaacagcttgacatagaccttttgttaccttccaactcctttcacattgcggatcttggttgctctgttggtcctaatacattttcttcagttgaaaacatacttgaagctgtacagctcaagtttcaaagccaaggactcatgaatcaccaaatccctgaatttcaagttttcttcaatgatcataccccaaatgattttaacttgctcttcaaatccctcccttccaacaggcaatactatgctgcgggagttccaggttctttttacggtcgcctattccctagtgcttccattcacttgtttcactcttcttttgctcttcaatggctttctaaagtaccaaaagatgtagaggacaaaaacagtccggcttggaataaaggccggattcattacctgggttcgactgatgaagtagtaagggcatataaagctcaatattctgagaatatgaattctttcctgcatgctagggcagaagaacttgtgtatggaggactactggtccttatcattcctggctacccacagggtacccctctttctcctactgtggcgtatttgaccttacaagtcatagaagcctgtctcatcgacatggtcagaaaggtaacaaatttgaactctctaagctcaacattctactactatgtatatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

234

Amino Acids

26.27

Weight (kDa)

5.77

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 575
AciI CCGC 2 cut(s) 89, 287
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 200, 496, 658
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 3 cut(s) 153, 381, 577
AgsI TTSAA 8 cut(s) 134, 146, 167, 206, 217, 253, 365, 664
AhdI GACNNNNNGTC 1 cut(s) 545
AjnI CCWGG 3 cut(s) 295, 438, 559
AluBI AGCT 6 cut(s) 46, 149, 157, 476, 675, 702
AluI AGCT 6 cut(s) 46, 149, 157, 476, 675, 702
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 3 cut(s) 200, 496, 658
Asp700I GAANNNNTTC 1 cut(s) 500
Asp718I GGTACC 1 cut(s) 575
AspS9I GGNCC 2 cut(s) 110, 547
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 110, 547
BanI GGYRCC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 271
BciT130I CCWGG 3 cut(s) 297, 440, 561
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 3 cut(s) 324, 513, 703
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 297, 440, 561
Bme18I GGWCC 2 cut(s) 110, 547
BmeRI GACNNNNNGTC 1 cut(s) 545
BmgT120I GGNCC 2 cut(s) 110, 547
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 3 cut(s) 297, 440, 561
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 172, 439
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 3 cut(s) 297, 440, 561
BseDI CCNNGG 2 cut(s) 172, 439
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 313
BsiSI CCGG 2 cut(s) 410, 427
BsmAI GTCTC 1 cut(s) 635
BsnI GGCC 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 2 cut(s) 91, 220
BspACI CCGC 2 cut(s) 89, 287
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 1 cut(s) 99
BspQI GCTCTTC 2 cut(s) 254, 366
BspT107I GGYRCC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 172, 439
BssMI GATC 2 cut(s) 91, 220
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 3 cut(s) 297, 440, 561
Bst4CI ACNGT 3 cut(s) 311, 407, 595
Bst6I CTCTTC 3 cut(s) 254, 355, 366
BstAUI TGTACA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 486, 671
BstKTI GATC 2 cut(s) 94, 223
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 2 cut(s) 91, 220
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 3 cut(s) 297, 440, 561
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 3 cut(s) 295, 438, 559
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 510
CciI TCATGA 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 110, 547
Csp6I GTAC 3 cut(s) 152, 380, 576
CviAII CATG 3 cut(s) 181, 509, 640
CviQI GTAC 3 cut(s) 152, 380, 576
DdeI CTNAG 2 cut(s) 486, 671
DpnI GATC 2 cut(s) 93, 222
DpnII GATC 2 cut(s) 91, 220
DriI GACNNNNNGTC 1 cut(s) 545
Eam1104I CTCTTC 3 cut(s) 254, 355, 366
Eam1105I GACNNNNNGTC 1 cut(s) 545
EarI CTCTTC 3 cut(s) 254, 355, 366
Eco130I CCWWGG 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 110, 547
Eco57I CTGAAG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 3 cut(s) 295, 438, 559
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 184, 512, 643
FatI CATG 3 cut(s) 180, 508, 639
FauI CCCGC 1 cut(s) 280
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 3 cut(s) 324, 513, 703
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 410, 427
Hin1II CATG 3 cut(s) 184, 512, 643
HinfI GANTC 4 cut(s) 5, 177, 184, 430
HpaII CCGG 2 cut(s) 410, 427
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 487, 647
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 78, 273
HpyCH4III ACNGT 3 cut(s) 311, 407, 595
HpyCH4V TGCA 2 cut(s) 38, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 2 cut(s) 486, 671
Hsp92II CATG 3 cut(s) 184, 512, 643
KpnI GGTACC 1 cut(s) 579
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 91, 220
LguI GCTCTTC 2 cut(s) 254, 366
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 3 cut(s) 324, 513, 703
MaeIII GTNAC 3 cut(s) 22, 63, 652
MalI GATC 2 cut(s) 93, 222
MboI GATC 2 cut(s) 91, 220
MboII GAAGA 6 cut(s) 117, 205, 241, 342, 353, 533
MflI RGATCY 1 cut(s) 91
MluCI AATT 4 cut(s) 33, 200, 496, 658
MlyI GAGTC 2 cut(s) 14, 171
MmeI TCCRAC 2 cut(s) 96, 291
MnlI CCTC 4 cut(s) 269, 388, 530, 591
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 2 cut(s) 12, 240
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 2 cut(s) 410, 427
MspR9I CCNGG 3 cut(s) 297, 440, 561
MvaI CCWGG 3 cut(s) 297, 440, 561
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeII GATC 2 cut(s) 91, 220
NlaIII CATG 3 cut(s) 184, 512, 643
NlaIV GGNNCC 1 cut(s) 577
NspI RCATGY 1 cut(s) 512
PaeI GCATGC 1 cut(s) 512
PagI TCATGA 1 cut(s) 180
PciSI GCTCTTC 2 cut(s) 254, 366
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 184, 430
PflFI GACNNNGTC 1 cut(s) 641
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 2 cut(s) 13, 171
PpsI GAGTC 2 cut(s) 13, 171
Psp6I CCWGG 3 cut(s) 295, 438, 559
PspGI CCWGG 3 cut(s) 295, 438, 559
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 2 cut(s) 110, 547
PsuI RGATCY 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 641
RsaI GTAC 3 cut(s) 153, 381, 577
RsaNI GTAC 3 cut(s) 152, 380, 576
RseI CAYNNNNRTG 1 cut(s) 638
SapI GCTCTTC 2 cut(s) 254, 366
SaqAI TTAA 2 cut(s) 12, 240
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 91, 220
Sau96I GGNCC 2 cut(s) 110, 547
SchI GAGTC 2 cut(s) 14, 171
ScrFI CCNGG 3 cut(s) 297, 440, 561
SinI GGWCC 2 cut(s) 110, 547
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 512
Sse9I AATT 4 cut(s) 33, 200, 496, 658
SsiI CCGC 2 cut(s) 89, 287
SspI AATATT 1 cut(s) 482
SspMI CTAG 3 cut(s) 324, 513, 703
StyD4I CCNGG 3 cut(s) 295, 438, 559
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 311, 407, 595
TaqI TCGA 2 cut(s) 446, 636
TasI AATT 4 cut(s) 33, 200, 496, 658
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 2 cut(s) 184, 430
Tru1I TTAA 2 cut(s) 12, 240
Tru9I TTAA 2 cut(s) 12, 240
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 197, 422, 468, 509
Tth111I GACNNNGTC 1 cut(s) 641
VpaK11BI GGWCC 2 cut(s) 110, 547
XapI RAATTY 3 cut(s) 200, 496, 658
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 3 cut(s) 324, 513, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.