FvH4_5g16970

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000151
Physical Location & Seq
Reverse (-)
9671332 .. 9674146
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16970.t1

Sequence Viewer

Length: 1062 bp
ATGGAAGCACATCCAATGGAAGGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCCGTTCTGCAGAGAGGAGTTGTTGATGCTGCTAAAGAACTTCTAAAAAAGGGAATTGCGGAAACACTTGACATAGATATATTATCATCTTCCAAATCCTTTAAAATTGCTGATCTGGGTTGCTCTGTTGGGCCTAATACATTTTATGCTGTTAAAAACATAATTGAAGCTGTGGAGTGCAAGTATCAAAGCCATGGAGAGAATTCACAAATCCCAGAATTTCAAGTCTTGTTTAATGATCACCCCTCAAATGACTTTAACACGCTGTTCAAATCCTTCCCTGAGAGCAGGCGATACTATGCAGCAGGGGTGCCTGGTTCTTTCTATAGTCGAATATTTCCTAGTGCTTCCATCCACTTAGTTCACTCTTCCTATGCCATTCATTGGCTTTCTAGAGTACCGAAAGAGGTGTCGGACAGACACAGTCCTGCTTGGAATAAAGGAAGGATTCATTACTTGAATGCCAGTGATGAAGTAGTAAGGGCTTATAAAGCTCAATATGTCAAGGACATGGAGTGTTTCCTGCATGCTAGAGCACAAGAGATTGTATGTGGAGGACTAATGGTGCTTACCTATCCAGGCCGCCCAGATGGCTCCCGAAGTTTTCAAGCCTGGGCAAATTTGGCCTTCCAAGTTTTAGGATTTTGCCTCATGGACTTGGTTACAAAGGGAGTTGTTAGCGAAGAGAAAGTAGATTCATTCAACATGCCTATATATTCCATGACCCCCCTAGAACTTGAAGCTGCTGTGAAACAGAATGGAAGCTTTAGCATAGAGATGATGACAAACTTACCAGATCCTCTGGTAGATGACACTCTTTCAGTACCGCAACTACTTGCCTCTCAAATGAGAGCTGGCGTGGAGGGAATGATCAAGAATCACTTTGGAGAGGAAATCTTAGATGAGCTCTTCGACTTGTACTGGCAAAAATGTGAGCAAGATATGCTTGAATTTCTTGCTGTGCTTGGACACAACTTTCTTGTTGTTCTTAGACGTAAGGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

5.5

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 44 - 350 2.3e-108 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 438
AciI CCGC 3 cut(s) 113, 637, 881
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 4 cut(s) 256, 272, 673, 1004
AfaI GTAC 3 cut(s) 453, 879, 974
AfiI CCNNNNNNNGG 2 cut(s) 20, 438
AgsI TTSAA 8 cut(s) 221, 278, 325, 514, 662, 757, 794, 1004
AjnI CCWGG 3 cut(s) 367, 631, 665
AluBI AGCT 7 cut(s) 42, 224, 548, 797, 819, 908, 961
AluI AGCT 7 cut(s) 42, 224, 548, 797, 819, 908, 961
Alw21I GWGCWC 2 cut(s) 592, 963
AlwI GGATC 1 cut(s) 845
AoxI GGCC 4 cut(s) 31, 185, 634, 678
ApeKI GCWGC 3 cut(s) 83, 356, 797
ApoI RAATTY 4 cut(s) 256, 272, 673, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspS9I GGNCC 2 cut(s) 32, 185
AsuHPI GGTGA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 963
Bbv12I GWGCWC 2 cut(s) 592, 963
BbvI GCAGC 3 cut(s) 70, 368, 784
BccI CCATC 3 cut(s) 23, 413, 638
BciT130I CCWGG 3 cut(s) 369, 633, 667
BclI TGATCA 2 cut(s) 292, 924
BfaI CTAG 4 cut(s) 396, 447, 585, 785
BfmI CTRYAG 2 cut(s) 62, 379
BglI GCCNNNNNGGC 1 cut(s) 645
BisI GCNGC 4 cut(s) 84, 357, 637, 798
BlsI GCNGC 4 cut(s) 85, 358, 638, 799
Bme1390I CCNGG 3 cut(s) 369, 633, 667
BmgT120I GGNCC 2 cut(s) 32, 185
BmiI GGNNCC 3 cut(s) 34, 366, 649
BmrFI CCNGG 3 cut(s) 369, 633, 667
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 247, 666
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 438
Bse1I ACTGG 2 cut(s) 519, 980
BseBI CCWGG 3 cut(s) 369, 633, 667
BseDI CCNNGG 2 cut(s) 247, 666
BseGI GGATG 2 cut(s) 10, 405
BseLI CCNNNNNNNGG 2 cut(s) 20, 438
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 519, 980
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 70, 368, 784
BshFI GGCC 4 cut(s) 33, 187, 636, 680
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 592, 963
BslI CCNNNNNNNGG 2 cut(s) 20, 438
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 4 cut(s) 33, 187, 636, 680
Bsp1286I GDGCHC 2 cut(s) 592, 963
Bsp143I GATC 4 cut(s) 166, 292, 850, 924
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 113, 637, 881
BspANI GGCC 4 cut(s) 33, 187, 636, 680
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 34, 366, 649
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 845
BspQI GCTCTTC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 519, 980
BssECI CCNNGG 2 cut(s) 247, 666
BssMI GATC 4 cut(s) 166, 292, 850, 924
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 3 cut(s) 369, 633, 667
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 3 cut(s) 427, 732, 968
BstAPI GCANNNNNTGC 1 cut(s) 997
BstC8I GCNNGC 3 cut(s) 344, 582, 910
BstDEI CTNAG 4 cut(s) 336, 412, 952, 1043
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 2 cut(s) 10, 405
BstKTI GATC 4 cut(s) 169, 295, 853, 927
BstMBI GATC 4 cut(s) 166, 292, 850, 924
BstMWI GCNNNNNNNGC 5 cut(s) 39, 545, 645, 677, 997
BstNI CCWGG 3 cut(s) 369, 633, 667
BstNSI RCATGY 2 cut(s) 584, 763
BstSCI CCNGG 3 cut(s) 367, 631, 665
BstSFI CTRYAG 2 cut(s) 62, 379
BstV1I GCAGC 3 cut(s) 70, 368, 784
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
BsuRI GGCC 4 cut(s) 33, 187, 636, 680
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 10, 405
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 344, 582, 910
Cfr13I GGNCC 2 cut(s) 32, 185
Csp6I GTAC 3 cut(s) 452, 878, 973
CviAII CATG 6 cut(s) 248, 565, 581, 706, 760, 775
CviQI GTAC 3 cut(s) 452, 878, 973
DdeI CTNAG 4 cut(s) 336, 412, 952, 1043
DpnI GATC 4 cut(s) 168, 294, 852, 926
DpnII GATC 4 cut(s) 166, 292, 850, 924
DraI TTTAAA 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 427, 732, 968
EarI CTCTTC 3 cut(s) 427, 732, 968
Ecl136II GAGCTC 1 cut(s) 961
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 963
Eco53kI GAGCTC 1 cut(s) 961
EcoICRI GAGCTC 1 cut(s) 961
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 367, 631, 665
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 6 cut(s) 251, 568, 584, 709, 763, 778
FalI AAGNNNNNCTT 4 cut(s) 920, 952, 984, 1016
FatI CATG 6 cut(s) 247, 564, 580, 705, 759, 774
FbaI TGATCA 2 cut(s) 292, 924
Fnu4HI GCNGC 4 cut(s) 84, 357, 637, 798
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 4 cut(s) 84, 357, 637, 798
FspBI CTAG 4 cut(s) 396, 447, 585, 785
GluI GCNGC 4 cut(s) 84, 357, 637, 798
HaeIII GGCC 4 cut(s) 33, 187, 636, 680
Hin1II CATG 6 cut(s) 251, 568, 584, 709, 763, 778
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 3 cut(s) 502, 749, 931
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 3 cut(s) 447, 651, 928
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 4 cut(s) 14, 340, 492, 691
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 1048
HpyCH4V TGCA 4 cut(s) 64, 234, 356, 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 545, 645, 677, 997
HpyF3I CTNAG 4 cut(s) 336, 412, 952, 1043
HpySE526I ACGT 1 cut(s) 1048
Hsp92II CATG 6 cut(s) 251, 568, 584, 709, 763, 778
Ksp22I TGATCA 2 cut(s) 292, 924
Kzo9I GATC 4 cut(s) 166, 292, 850, 924
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 3 cut(s) 70, 368, 784
LweI GCATC 1 cut(s) 70
MaeI CTAG 4 cut(s) 396, 447, 585, 785
MaeII ACGT 1 cut(s) 1048
MaeIII GTNAC 1 cut(s) 715
MalI GATC 4 cut(s) 168, 294, 852, 926
MboI GATC 4 cut(s) 166, 292, 850, 924
MboII GAAGA 4 cut(s) 135, 414, 749, 955
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 2 cut(s) 592, 963
MluCI AATT 7 cut(s) 108, 159, 216, 256, 272, 673, 1004
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 9 cut(s) 62, 310, 454, 602, 713, 864, 904, 910, 937
MseI TTAA 4 cut(s) 156, 207, 288, 312
MslI CAYNNNNRTG 1 cut(s) 830
MspR9I CCNGG 3 cut(s) 369, 633, 667
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 3 cut(s) 369, 633, 667
MwoI GCNNNNNNNGC 5 cut(s) 39, 545, 645, 677, 997
NcoI CCATGG 1 cut(s) 247
NdeII GATC 4 cut(s) 166, 292, 850, 924
NlaIII CATG 6 cut(s) 251, 568, 584, 709, 763, 778
NlaIV GGNNCC 3 cut(s) 34, 366, 649
NspI RCATGY 2 cut(s) 584, 763
PaeI GCATGC 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 968
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 502, 749, 931
PflFI GACNNNGTC 1 cut(s) 477
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 4 cut(s) 85, 358, 638, 799
PsiI TTATAA 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 963
Psp6I CCWGG 3 cut(s) 367, 631, 665
PspGI CCWGG 3 cut(s) 367, 631, 665
PspN4I GGNNCC 3 cut(s) 34, 366, 649
PspPI GGNCC 2 cut(s) 32, 185
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 850
PsyI GACNNNGTC 1 cut(s) 477
RsaI GTAC 3 cut(s) 453, 879, 974
RsaNI GTAC 3 cut(s) 452, 878, 973
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 963
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 4 cut(s) 156, 207, 288, 312
SatI GCNGC 4 cut(s) 84, 357, 637, 798
Sau3AI GATC 4 cut(s) 166, 292, 850, 924
Sau96I GGNCC 2 cut(s) 32, 185
ScrFI CCNGG 3 cut(s) 369, 633, 667
SduI GDGCHC 2 cut(s) 592, 963
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 2 cut(s) 62, 379
SmiMI CAYNNNNRTG 1 cut(s) 830
SphI GCATGC 1 cut(s) 584
Sse9I AATT 7 cut(s) 108, 159, 216, 256, 272, 673, 1004
SsiI CCGC 3 cut(s) 113, 637, 881
SspI AATATT 1 cut(s) 390
SspMI CTAG 4 cut(s) 396, 447, 585, 785
SstI GAGCTC 1 cut(s) 963
StyD4I CCNGG 3 cut(s) 367, 631, 665
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 1051
TaqI TCGA 2 cut(s) 385, 966
TasI AATT 7 cut(s) 108, 159, 216, 256, 272, 673, 1004
TatI WGTACW 1 cut(s) 972
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 3 cut(s) 502, 749, 931
Tru1I TTAA 4 cut(s) 156, 207, 288, 312
Tru9I TTAA 4 cut(s) 156, 207, 288, 312
TscAI CASTG 1 cut(s) 526
TseI GCWGC 3 cut(s) 83, 356, 797
TspDTI ATGAA 4 cut(s) 425, 494, 540, 741
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 438
XapI RAATTY 4 cut(s) 256, 272, 673, 1004
XbaI TCTAGA 1 cut(s) 446
XceI RCATGY 2 cut(s) 584, 763
XspI CTAG 4 cut(s) 396, 447, 585, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.