FvH4_4g07950

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000151
Physical Location & Seq
Reverse (-)
7491194 .. 7491927
734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07950.t1

Sequence Viewer

Length: 537 bp
ATGGGTGAACTAAGTGAACTTCAAATTATAAAATTATATGTAGGACGTTTCGTTGATGCTCCCAAAGAACTTTTGAACAGGGCAATTGTAGAAAAGCTGGACATCGAAAACTTCCTACCTTCCAAGTCTTTTCACATTGCAGATTTAGGTTGTTCTACTGGGCCAAACAATTTTTGGGCAGTTGAAAACATACTTGAAGCTGTGGAGTTCAAGTCAGGGCTGAATTCTCAGATTCCTGAATTTCAAGTGTTCTTTCAAGATCATACCTCAAATGACTTTAACATGCTCTTCCAGTCTCTCCCTCAAAACATGCGATATTATGCAGCCGGTGTACCAGGTTTTTTTTACGAAGGAGTGTTTCCTAATGCTTCCATTAACTTTGCTTACTCTTCTACTGCCATTCATTGGTTATCTAGAGGGCCAACAGCAGTAGCTGATAGTAGCAGTCCTGCATGGAACAAAGGACGAATTCAGTACTCAAATGCCACAAATGAAGTAACAAGGGCTTATGAAACTCAATATAGTGAGGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

179

Amino Acids

20.09

Weight (kDa)

4.79

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 31 - 178 2e-49 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 405
AcsI RAATTY 3 cut(s) 223, 239, 468
AfaI GTAC 2 cut(s) 333, 476
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 7 cut(s) 23, 76, 185, 197, 211, 245, 257
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 97, 200, 434
AluI AGCT 3 cut(s) 97, 200, 434
Alw26I GTCTC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 161, 419
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 223, 239, 468
AspS9I GGNCC 2 cut(s) 161, 419
AsuHPI GGTGA 1 cut(s) 17
BbvI GCAGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 414
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 161, 419
BmrFI CCNGG 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 163, 292
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 163, 292
BseXI GCAGC 1 cut(s) 335
BshFI GGCC 2 cut(s) 163, 421
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 2 cut(s) 163, 421
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 2 cut(s) 163, 421
BspCNI CTCAG 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 163, 292
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 2 cut(s) 293, 394
BstDEI CTNAG 2 cut(s) 11, 228
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 3 cut(s) 286, 313, 535
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 163, 421
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 161, 419
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 2 cut(s) 332, 475
CviAII CATG 4 cut(s) 283, 310, 453, 532
CviJI RGCY 8 cut(s) 97, 163, 200, 220, 326, 421, 434, 506
CviKI_1 RGCY 8 cut(s) 97, 163, 200, 220, 326, 421, 434, 506
CviQI GTAC 2 cut(s) 332, 475
DdeI CTNAG 2 cut(s) 11, 228
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 293, 394
EarI CTCTTC 2 cut(s) 293, 394
EcoRI GAATTC 2 cut(s) 223, 468
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 4 cut(s) 286, 313, 456, 535
FatI CATG 4 cut(s) 282, 309, 452, 531
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 414
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 163, 421
HapII CCGG 1 cut(s) 327
Hin1II CATG 4 cut(s) 286, 313, 456, 535
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 8, 17, 332
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 3 cut(s) 236, 257, 414
Hpy8I GTNNAC 3 cut(s) 8, 17, 332
HpyAV CCTTC 2 cut(s) 129, 344
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 140, 323, 452
HpyF3I CTNAG 2 cut(s) 11, 228
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 4 cut(s) 286, 313, 456, 535
Kzo9I GATC 1 cut(s) 259
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 1 cut(s) 46
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 496
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 2 cut(s) 280, 381
MfeI CAATTG 1 cut(s) 84
MluCI AATT 7 cut(s) 24, 32, 84, 169, 223, 239, 468
MnlI CCTC 4 cut(s) 277, 312, 410, 520
MseI TTAA 2 cut(s) 279, 375
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 336
NdeII GATC 1 cut(s) 259
NlaIII CATG 4 cut(s) 286, 313, 456, 535
NspI RCATGY 3 cut(s) 286, 313, 535
PciI ACATGT 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 1 cut(s) 325
PscI ACATGT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 2 cut(s) 161, 419
PstNI CAGNNNCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 333, 476
RsaNI GTAC 2 cut(s) 332, 475
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 279, 375
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 161, 419
ScaI AGTACT 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 49, 99, 121, 151, 202, 269, 340, 436
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 1 cut(s) 46
Sse9I AATT 7 cut(s) 24, 32, 84, 169, 223, 239, 468
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 334
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 105
TasI AATT 7 cut(s) 24, 32, 84, 169, 223, 239, 468
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 279, 375
Tru9I TTAA 2 cut(s) 279, 375
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 392, 507, 525
Van91I CCANNNNNTGG 1 cut(s) 405
XapI RAATTY 3 cut(s) 223, 239, 468
XbaI TCTAGA 1 cut(s) 413
XceI RCATGY 3 cut(s) 286, 313, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.