pycom09g17000

methyltransferase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
17447502 .. 17447948
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17000.1

Sequence Viewer

Length: 366 bp
ATGGGAGTAGTTAGTGAAGAGAAGGTAGATTCATTTAACATCCCTTCATACTGCGTTTCTCCTCAAGAACTGGAAGTCATTGTAGAACGAAATGGATGCTTCAGCATAGAGGCTTTGGAAACCCTAGTTTATCATGTCCCGGAACATGGCGCTCTCTCTATAGCAAAACGTAGTGCATCCACGATGAGAGCTGCCACAGAGGGACTCATCAAGCAACAATTTGGAGAAGAAATCTTAGATGAACTCTTCGGCTTGTATCAGCAAAAAATTGAAGAGCAAATCTCAATATTTGAGTCAAAGAAGTCGGTTATCTTTTTTGTTGTGCTTAAACGCAAGGCGAATGCGTTCACAAAATTATCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.59

Weight (kDa)

5.22

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 2 - 111 1.7e-25 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 140
BbvI GCAGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 86, 185
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 75
BseGI GGATG 3 cut(s) 39, 101, 176
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 2 cut(s) 122, 216
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 122, 216
BsmI GAATGC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 75
Bst6I CTCTTC 3 cut(s) 12, 251, 267
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 39, 101, 176
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 178
BtsCI GGATG 3 cut(s) 39, 101, 176
CfoI GCGC 1 cut(s) 152
CviAII CATG 2 cut(s) 134, 146
CviJI RGCY 3 cut(s) 113, 191, 252
CviKI_1 RGCY 3 cut(s) 113, 191, 252
DdeI CTNAG 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 12, 251, 267
EarI CTCTTC 3 cut(s) 12, 251, 267
Eco57I CTGAAG 1 cut(s) 85
FaeI CATG 2 cut(s) 137, 149
FaiI YATR 5 cut(s) 49, 107, 135, 147, 161
FaqI GGGAC 2 cut(s) 122, 216
FatI CATG 2 cut(s) 133, 145
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 3 cut(s) 26, 108, 163
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 153
HapII CCGG 1 cut(s) 140
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 137, 149
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 29, 204, 293
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 348
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 16, 54
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 137, 149
HspAI GCGC 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 267
LpnPI CCDG 2 cut(s) 56, 153
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 86, 185
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 169
MboII GAAGA 4 cut(s) 29, 238, 239, 284
MluCI AATT 3 cut(s) 218, 267, 353
MlyI GAGTC 2 cut(s) 198, 302
MnlI CCTC 3 cut(s) 72, 103, 193
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 3 cut(s) 36, 327, 364
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 140
NlaIII CATG 2 cut(s) 137, 149
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 2 cut(s) 198, 301
PpsI GAGTC 2 cut(s) 198, 301
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 3 cut(s) 36, 327, 364
SatI GCNGC 1 cut(s) 192
SchI GAGTC 2 cut(s) 198, 302
ScrFI CCNGG 1 cut(s) 140
SetI ASST 3 cut(s) 27, 172, 193
SfaNI GCATC 2 cut(s) 86, 185
SfcI CTRYAG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 218, 267, 353
SspI AATATT 1 cut(s) 288
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 172
TasI AATT 3 cut(s) 218, 267, 353
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 36, 327, 364
Tru9I TTAA 3 cut(s) 36, 327, 364
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 21, 36, 255
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.