RLG00000005456

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000151
Physical Location & Seq
Forward (+)
67818326 .. 67819050
725 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005456

Sequence Viewer

Length: 564 bp
ATGCTCTTCAAAACCCTTCCTCAGAACAAGCGATACTATGCAGCTGGTGTGCCAGGTTCTTTCTATGGCCGGTTATTTCCTAATGCTTCCATTCACATTGCTCACTCTTCTTATGCCATTCAATGGCTTTCAAGAGTACCGAAAGCAGTGATGGATAGTAGCGGTCCTGCTTGGAACAAAGGTCGAATTCATTACTCAAATTCCACAAATGAAGTAATAAGGGCTTATGAAACTCAATATACTGAGGACATGAAATGCTTCCTGCAAGCTAGGGCACATGAAATTGTGCAGGGAGTTGTTAGCAAAGAGAAATTGGATTCATTTAACATACCAACATATAACATGTCACCCCAAGAACTAGTAGCTGTTGTAGAACGAAATAAATGCTTTAGCATAGAGAAAATGGTAGATGTACCTCTTCCCTTGGTACATGACACTGTCTTAAAGGCACAGCCAGTTGCCTCTCACGTGAGGGCTGGCATGGAGGGGGACCTCAAGCAGCAATTTGGAGAAGAAATCTTAGACGAGCTCTGCAATTTGTTTCTCAAAAAATGTGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

188

Amino Acids

21.08

Weight (kDa)

8.3

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 9 - 98 2e-37 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 97 - 185 8.2e-18 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 186, 199
AcvI CACGTG 1 cut(s) 469
AfaI GTAC 3 cut(s) 138, 414, 429
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 10, 122, 132
AhlI ACTAGT 1 cut(s) 358
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 4 cut(s) 44, 269, 365, 529
AluI AGCT 4 cut(s) 44, 269, 365, 529
Alw21I GWGCWC 1 cut(s) 531
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 41, 499
ApoI RAATTY 2 cut(s) 186, 199
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 164, 490
AsuHPI GGTGA 1 cut(s) 339
AvaII GGWCC 2 cut(s) 164, 490
BaeGI GKGCMC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 531
BbrPI CACGTG 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 53, 511
BccI CCATC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 54
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 2 cut(s) 270, 359
BisI GCNGC 2 cut(s) 42, 500
BlsI GCNGC 2 cut(s) 43, 501
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 2 cut(s) 164, 490
BmgT120I GGNCC 2 cut(s) 164, 490
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 35, 234
BseNI ACTGG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 53, 511
BsgI GTGCAG 1 cut(s) 308
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 277, 531
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 34, 235
BspLI GGNNCC 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 3 cut(s) 11, 112, 423
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 267, 478
BstDEI CTNAG 3 cut(s) 21, 243, 520
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 53, 511
BsuRI GGCC 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 153, 435
Cac8I GCNNGC 2 cut(s) 267, 478
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 164, 490
Csp6I GTAC 3 cut(s) 137, 413, 428
CspCI CAANNNNNGTGG 1 cut(s) 535
CviAII CATG 6 cut(s) 250, 278, 343, 431, 481, 561
CviJI RGCY 9 cut(s) 44, 69, 127, 224, 269, 365, 454, 476, 529
CviKI_1 RGCY 9 cut(s) 44, 69, 127, 224, 269, 365, 454, 476, 529
CviQI GTAC 3 cut(s) 137, 413, 428
DdeI CTNAG 3 cut(s) 21, 243, 520
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 11, 112, 423
EarI CTCTTC 3 cut(s) 11, 112, 423
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 164, 490
Eco53kI GAGCTC 1 cut(s) 529
Eco72I CACGTG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 6 cut(s) 253, 281, 346, 434, 484, 564
FaqI GGGAC 1 cut(s) 503
FatI CATG 6 cut(s) 249, 277, 342, 430, 480, 560
Fnu4HI GCNGC 2 cut(s) 42, 500
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 42, 500
FspBI CTAG 2 cut(s) 270, 359
GluI GCNGC 2 cut(s) 42, 500
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 70
Hin1II CATG 6 cut(s) 253, 281, 346, 434, 484, 564
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 4 cut(s) 41, 265, 289, 534
HpyF3I CTNAG 3 cut(s) 21, 243, 520
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 6 cut(s) 253, 281, 346, 434, 484, 564
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 557
LpnPI CCDG 9 cut(s) 30, 39, 66, 83, 180, 275, 275, 462, 468
Lsp1109I GCAGC 2 cut(s) 53, 511
MaeI CTAG 2 cut(s) 270, 359
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 345
MboII GAAGA 3 cut(s) 99, 410, 524
MhlI GDGCHC 2 cut(s) 277, 531
MluCI AATT 6 cut(s) 186, 199, 282, 311, 503, 535
MnlI CCTC 7 cut(s) 30, 238, 426, 465, 472, 478, 503
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 324, 443
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NlaIII CATG 6 cut(s) 253, 281, 346, 434, 484, 564
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 345
NspI RCATGY 1 cut(s) 346
PciI ACATGT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 2 cut(s) 43, 501
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 490
PscI ACATGT 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 52
PspCI CACGTG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 2 cut(s) 164, 490
PspPPI RGGWCCY 1 cut(s) 490
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 138, 414, 429
RsaNI GTAC 3 cut(s) 137, 413, 428
SacI GAGCTC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 324, 443
SatI GCNGC 2 cut(s) 42, 500
Sau96I GGNCC 2 cut(s) 164, 490
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 2 cut(s) 277, 531
SetI ASST 9 cut(s) 46, 58, 184, 271, 367, 418, 471, 495, 531
SinI GGWCC 2 cut(s) 164, 490
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 6 cut(s) 186, 199, 282, 311, 503, 535
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 270, 359
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 184
TasI AATT 6 cut(s) 186, 199, 282, 311, 503, 535
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 324, 443
Tru9I TTAA 2 cut(s) 324, 443
TscAI CASTG 2 cut(s) 153, 442
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 2 cut(s) 41, 499
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 6 cut(s) 179, 225, 243, 266, 294, 309
TspRI CASTG 2 cut(s) 153, 442
Tth111I GACNNNGTC 1 cut(s) 437
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 164, 490
XapI RAATTY 2 cut(s) 186, 199
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 270, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.