RchiOBHm_Chr7g0179041

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000151
Physical Location & Seq
Forward (+)
1489203 .. 1490250
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15956

Sequence Viewer

Length: 738 bp
ATGACGACCCCTACAATACAGGATGCAATACACAGAGAAACAGAGAGAAACAAAGAGATGGCAGCAGAGAATACCAGTAAAGTCTTTGAAGCACATCCTATGAAAGGTGGAGATGGCCCCAATAGCTATACAAAAAACTCCATTCTGCAGAGAGCTTCTGTCGATGCTGCCAAAGAATTTCTGAACAAGGCAGTTGCAGAAAAGCTGGACATCAAAAGTTTCTTACCTTCCAAGTCTTTTCGCATTGCAGATCTGGGTTGCTCTACTGGACCAAATACTTTTATGGCAGTTGGAAACATACTTGAAGCTGTGGAGTCCAAGTATCGAAGCCAAGGGCTGAATTCTCAGATTCCCGAATTTCAAGTGTTCTTTAATGATCATGCCTCAAATGACTTTAACATGCTCTTCCAGTCCCTCCCTCAGAACAGGCAATACCATGCAGCCGGTGTACCTGGTTCTTTCTACAAACAGGTGTTACCTAATGCTTCCATTAACTTTGTTTACTCTTCTACTGCCATTCAATGGCTCTCTAGAGTACCAACAGCAGTAGCAGATAGTAATAGTCCTGCGTGGAACAAAGGACACATTCATTACTCAAATGCCACAGATGAAGTAATAAGGGCTTATGAAACTCAATATAGTGATGACATGGAGAGCTTCCAGCAAGCCAGGGCACAAGAGATTGTGTACGGAGGATTAATTGTACTTACATTTCCAGGCCGCCACAGTGACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

245

Amino Acids

27.24

Weight (kDa)

5.97

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 69 - 243 1.1e-67 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G37970 AT5G37990 AT5G38100 AT5G38100 AT5G38100 AT5G38100 AT5G38780 AT5G38780
fragaria_vesca FvH4_4g07940 FvH4_4g07950 FvH4_5g16970 FvH4_7g18490
malus_domestica MD02G1312100.v1.1 MD02G1312500.v1.1 MD05G1007900.v1.1 MD06G1223300.v1.1 MD06G1223500.v1.1 MD06G1223600.v1.1 MD06G1223700.v1.1 MD06G1223800.v1.1 MD06G1227300.v1.1 MD09G1253900.v1.1 MD09G1254000.v1.1 MD09G1254100.v1.1 MD09G1254200.v1.1 MD09G1254300.v1.1 MD10G1005200.v1.1 MD10G1005900.v1.1 MD14G1232400.v1.1 MD14G1232700.v1.1 MD14G1232800.v1.1 MD14G1232900.v1.1 MD14G1233000.v1.1 MD15G1255300.v1.1
prunus_persica Prupe.5G228400_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228500_v2.0.a1 Prupe.5G228600_v2.0.a1 Prupe.5G228700_v2.0.a1 Prupe.5G228800_v2.0.a1 Prupe.5G228900_v2.0.a1 Prupe.5G229000_v2.0.a1 Prupe.8G008300_v2.0.a1
pyrus_communis pycom02g26200 pycom02g26220 pycom05g00410 pycom06g19910 pycom06g19920 pycom06g19930 pycom06g19940 pycom06g20380 pycom09g16970 pycom09g16990 pycom09g17000 pycom10g00420 pycom14g19370 pycom14g19380 pycom14g19420 pycom14g19430 pycom15g22380 pycom15g22390
rosa_chinensis RchiOBHm_Chr1g0327241 RchiOBHm_Chr1g0327261 RchiOBHm_Chr2g0128631 RchiOBHm_Chr2g0137031 RchiOBHm_Chr3g0486031 RchiOBHm_Chr3g0486051 RchiOBHm_Chr3g0486091 RchiOBHm_Chr4g0400921 RchiOBHm_Chr4g0400971 RchiOBHm_Chr4g0400991 RchiOBHm_Chr7g0178281 RchiOBHm_Chr7g0178301 RchiOBHm_Chr7g0178321 RchiOBHm_Chr7g0178951 RchiOBHm_Chr7g0178961 RchiOBHm_Chr7g0178971 RchiOBHm_Chr7g0178991 RchiOBHm_Chr7g0179001 RchiOBHm_Chr7g0179021 RchiOBHm_Chr7g0179031 RchiOBHm_Chr7g0179041 RchiOBHm_Chr7g0179051 RchiOBHm_Chr7g0187641 RchiOBHm_Chr7g0201881 RchiOBHm_Chr7g0201901
rosa_laevigata RLG00000005390 RLG00000005391 RLG00000005392 RLG00000005394 RLG00000005456 RLG00000009163 RLG00000009164 RLG00000019598 RLG00000023105 RLG00000030028
rosa_multiflora Rmu_co8337425.1_g000001 Rmu_sc0000795.1_g000125 Rmu_sc0000837.1_g000085 Rmu_sc0000888.1_g000008 Rmu_sc0000888.1_g000010 Rmu_sc0000888.1_g000011 Rmu_sc0000888.1_g000013 Rmu_sc0001021.1_g000003 Rmu_sc0001021.1_g000004 Rmu_sc0001021.1_g000006 Rmu_sc0001374.1_g000046 Rmu_sc0002026.1_g000007 Rmu_sc0002026.1_g000019 Rmu_sc0003465.1_g000046 Rmu_sc0004483.1_g000006 Rmu_sc0006229.1_g000002 Rmu_sc0006736.1_g000019 Rmu_sc0006736.1_g000027 Rmu_sc0007073.1_g000003 Rmu_sc0036373.1_g000001 Rmu_ssc0000009.1_g000007
rosa_roxburghii Rroxscaffold_2G00107760 Rroxscaffold_2G00115440 Rroxscaffold_2G00115920 Rroxscaffold_3G00255030 Rroxscaffold_3G00267200 Rroxscaffold_3G00274440 Rroxscaffold_3G00274450 Rroxscaffold_3G00274480 Rroxscaffold_4G00322940 Rroxscaffold_4G00322950 Rroxscaffold_4G00322980 Rroxscaffold_4G00323000 Rroxscaffold_4G00323020 Rroxscaffold_5G00345860 Rroxscaffold_5G00345890 Rroxscaffold_5G00345920 Rroxscaffold_6G00396060 Rroxscaffold_6G00396070
rosa_rugosa Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064700 Rorug01G0064800 Rorug01G0297000 Rorug02G0279500 Rorug02G0337300 Rorug03G0223300 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223400 Rorug03G0223500 Rorug03G0223600 Rorug04G0027400 Rorug04G0027500 Rorug04G0027600 Rorug06G0420600 Rorug06G0420600 Rorug06G0483400 Rorug07G0066400 Rorug07G0066600
rosa_samantha Rh1AG081900 Rh1AG082300 Rh1AG082400 Rh1AG305600 Rh2BG340800 Rh2BG393000 Rh3BG308300 Rh4CG113300 Rh4CG113700 Rh7CG020600 Rh7CG020700 Rh7CG020800 Rh7CG021000 Rh7CG088900 Rh7CG204900
rosa_wichuraiana Rw0G002670 Rw0G014940 Rw0G021450 Rw1G006470 Rw1G006490 Rw2G026880 Rw2G027140 Rw2G031610 Rw3G024210 Rw3G024220 Rw7G001620 Rw7G001630 Rw7G001640 Rw7G001650 Rw7G016930 Rw7G016950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 522
AciI CCGC 1 cut(s) 721
AcsI RAATTY 3 cut(s) 176, 340, 356
AfaI GTAC 4 cut(s) 450, 537, 689, 705
AfiI CCNNNNNNNGG 2 cut(s) 104, 522
AgsI TTSAA 4 cut(s) 89, 305, 362, 521
AjnI CCWGG 3 cut(s) 451, 668, 715
AluBI AGCT 5 cut(s) 126, 155, 205, 308, 657
AluI AGCT 5 cut(s) 126, 155, 205, 308, 657
AoxI GGCC 2 cut(s) 115, 718
ApeKI GCWGC 3 cut(s) 62, 167, 440
ApoI RAATTY 3 cut(s) 176, 340, 356
AseI ATTAAT 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 116, 269
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 676
BbvI GCAGC 3 cut(s) 74, 154, 452
BccI CCATC 2 cut(s) 52, 107
BciT130I CCWGG 3 cut(s) 453, 670, 717
BclI TGATCA 1 cut(s) 376
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 250
BisI GCNGC 4 cut(s) 63, 168, 441, 721
BlsI GCNGC 4 cut(s) 64, 169, 442, 722
Bme1390I CCNGG 3 cut(s) 453, 670, 717
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 116, 269
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 453, 670, 717
BmsI GCATC 2 cut(s) 13, 154
BsaJI CCNNGG 2 cut(s) 331, 669
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 522
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 3 cut(s) 75, 271, 409
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 3 cut(s) 453, 670, 717
BseDI CCNNGG 2 cut(s) 331, 669
BseGI GGATG 2 cut(s) 28, 94
BseLI CCNNNNNNNGG 2 cut(s) 104, 522
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 359, 434
BseNI ACTGG 3 cut(s) 75, 271, 409
BseSI GKGCMC 1 cut(s) 676
BseXI GCAGC 3 cut(s) 74, 154, 452
BshFI GGCC 2 cut(s) 117, 720
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 2 cut(s) 104, 522
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 2 cut(s) 117, 720
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 2 cut(s) 250, 376
BspACI CCGC 1 cut(s) 721
BspANI GGCC 2 cut(s) 117, 720
BspCNI CTCAG 2 cut(s) 358, 433
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 3 cut(s) 75, 271, 409
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 331, 669
BssMI GATC 2 cut(s) 250, 376
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 453, 670, 717
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 2 cut(s) 410, 511
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 345, 420
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 28, 94
BstKTI GATC 2 cut(s) 253, 379
BstMBI GATC 2 cut(s) 250, 376
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 3 cut(s) 453, 670, 717
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 451, 668, 715
BstSFI CTRYAG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 74, 154, 452
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 2 cut(s) 117, 720
BtsCI GGATG 2 cut(s) 28, 94
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 116, 269
CsiI ACCWGGT 1 cut(s) 451
Csp6I GTAC 4 cut(s) 449, 536, 688, 704
CviAII CATG 4 cut(s) 380, 400, 437, 649
CviQI GTAC 4 cut(s) 449, 536, 688, 704
DdeI CTNAG 2 cut(s) 345, 420
DpnI GATC 2 cut(s) 252, 378
DpnII GATC 2 cut(s) 250, 376
Eam1104I CTCTTC 2 cut(s) 410, 511
EarI CTCTTC 2 cut(s) 410, 511
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 3 cut(s) 451, 668, 715
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 4 cut(s) 383, 403, 440, 652
FaqI GGGAC 1 cut(s) 397
FatI CATG 4 cut(s) 379, 399, 436, 648
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 63, 168, 441, 721
FokI GGATG 2 cut(s) 35, 81
Fsp4HI GCNGC 4 cut(s) 63, 168, 441, 721
FspBI CTAG 1 cut(s) 531
GluI GCNGC 4 cut(s) 63, 168, 441, 721
HaeIII GGCC 2 cut(s) 117, 720
HapII CCGG 1 cut(s) 444
Hin1II CATG 4 cut(s) 383, 403, 440, 652
HinfI GANTC 2 cut(s) 314, 349
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 3 cut(s) 449, 502, 688
Hpy188I TCNGA 3 cut(s) 183, 348, 423
Hpy188III TCNNGA 2 cut(s) 353, 531
Hpy8I GTNNAC 3 cut(s) 449, 502, 688
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4V TGCA 5 cut(s) 26, 148, 197, 248, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 345, 420
Hsp92II CATG 4 cut(s) 383, 403, 440, 652
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 2 cut(s) 250, 376
LguI GCTCTTC 1 cut(s) 410
Lsp1109I GCAGC 3 cut(s) 74, 154, 452
LweI GCATC 2 cut(s) 13, 154
MabI ACCWGGT 1 cut(s) 451
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 474, 728
MalI GATC 2 cut(s) 252, 378
MboI GATC 2 cut(s) 250, 376
MboII GAAGA 2 cut(s) 397, 498
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 4 cut(s) 176, 340, 356, 699
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 4 cut(s) 394, 425, 429, 686
MseI TTAA 4 cut(s) 372, 396, 492, 698
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 3 cut(s) 453, 670, 717
MvaI CCWGG 3 cut(s) 453, 670, 717
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 2 cut(s) 250, 376
NlaIII CATG 4 cut(s) 383, 403, 440, 652
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 522
PkrI GCNGC 4 cut(s) 64, 169, 442, 722
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 698
Psp6I CCWGG 3 cut(s) 451, 668, 715
PspGI CCWGG 3 cut(s) 451, 668, 715
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 116, 269
PsrI GAACNNNNNNTAC 2 cut(s) 416, 448
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 4 cut(s) 450, 537, 689, 705
RsaNI GTAC 4 cut(s) 449, 536, 688, 704
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 372, 396, 492, 698
SatI GCNGC 4 cut(s) 63, 168, 441, 721
Sau3AI GATC 2 cut(s) 250, 376
Sau96I GGNCC 2 cut(s) 116, 269
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 453, 670, 717
SduI GDGCHC 1 cut(s) 676
SexAI ACCWGGT 1 cut(s) 451
SfaNI GCATC 2 cut(s) 13, 154
SfcI CTRYAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 269
Sse9I AATT 4 cut(s) 176, 340, 356, 699
SsiI CCGC 1 cut(s) 721
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 3 cut(s) 451, 668, 715
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 728
TaqI TCGA 2 cut(s) 162, 325
TasI AATT 4 cut(s) 176, 340, 356, 699
TatI WGTACW 1 cut(s) 703
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 4 cut(s) 372, 396, 492, 698
Tru9I TTAA 4 cut(s) 372, 396, 492, 698
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 3 cut(s) 62, 167, 440
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 4 cut(s) 116, 578, 624, 642
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 3 cut(s) 176, 340, 356
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 403
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.