FvH4_5g16950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013063
Physical Location & Seq
Reverse (-)
9661382 .. 9664670
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16950.t2

Sequence Viewer

Length: 720 bp
ATGGCTCTGAGTTCTTCTCAAGCCCTACTCAGACCCTCAAACTTCCCTCTCCAAATTCCAACACATGCTAAAGCCATAAACTTTAATCTGCCCAGGTTTCCCAGAGCAAGAACCAGAGCATCCTTTGAAGGAAATGACCAAAGTGCCACAGCCACACCTCTGCATGTTCAGGAGCCACTGCTCAGCAAAGAAGTGGAGGAGAGTGTGAAAGTGCTGAAGAATGCTGCAAAAACAAGAAAGGTTGCAGCAGAGGAGATTCTGTCTGCTCTATCTGTGCTTGAGAATGCAAAGCTGGACCCTTCTGGGTTTCTTGAGACGCTTGGTGGGACAGAATCACCGGGGAGAACTTGGATGCTCATTTTTACTTCTGAGAAGAAACTGAAGGGTGGTAGATACTTCCCTATAACTGCTGTTCAGCGGTTCGATGCTGCTGGAAAGAGAATTGAGAATGGAGTATATTTTGGGCCAATTGGAGCCTTAACATTTGAAGGAAGGCTTTCTTGGAAGAAGAGAATACTGGCCTTTGTCTTTGAGAGCATTCGGATAAAAATTGGAACTCTGAAACCTTTGGAGATCAGTCTAGGCCAAAAGGATGACAGAGAGCCTAGCACCGAGGATCCTTTCTTTATATGGTTTTACATAGATGAAGAATTAGCAGTTGCTCGAGGCAAACAAGGGGGAACTGCTTTCTGGTGCCGCTGTCGCCGTGTAATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.69

Weight (kDa)

9.66

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18060
fragaria_vesca FvH4_5g16950 FvH4_5g16950 FvH4_5g16950
malus_domestica MD06G1223100.v1.1
prunus_persica Prupe.5G228200_v2.0.a1
pyrus_communis pycom14g19360
rosa_chinensis RchiOBHm_Chr7g0179071
rosa_laevigata RLG00000005388
rosa_multiflora Rmu_sc0000888.1_g000015
rosa_roxburghii Rroxscaffold_3G00274420
rosa_rugosa Rorug06G0420600 Rorug06G0420700.1
rosa_samantha Rh7AG020100 Rh7BG019800 Rh7CG021100 Rh7DG020600
rosa_wichuraiana Rw7G001670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 693
AciI CCGC 2 cut(s) 418, 697
AclWI GGATC 2 cut(s) 611, 624
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 236, 401
AgsI TTSAA 2 cut(s) 128, 488
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 611, 624
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 3 cut(s) 464, 519, 583
ApeKI GCWGC 3 cut(s) 224, 245, 428
ApoI RAATTY 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 295, 464
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 295
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 211, 257, 415
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 581, 606
BisI GCNGC 4 cut(s) 225, 246, 429, 697
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 4 cut(s) 226, 247, 430, 698
Bme1390I CCNGG 2 cut(s) 94, 339
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 295, 464
BmiI GGNNCC 5 cut(s) 174, 297, 475, 618, 695
BmrFI CCNGG 2 cut(s) 94, 339
BmsI GCATC 3 cut(s) 128, 342, 415
BplI GAGNNNNNCTC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 299, 332
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 92, 338, 612
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse1I ACTGG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 92, 338, 612
BseGI GGATG 3 cut(s) 119, 357, 598
BseMII CTCAG 3 cut(s) 43, 196, 360
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 212, 266
BseXI GCAGC 3 cut(s) 211, 257, 415
BshFI GGCC 3 cut(s) 466, 521, 585
BshNI GGYRCC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 3 cut(s) 226, 289, 537
BsnI GGCC 3 cut(s) 466, 521, 585
BsoBI CYCGRG 1 cut(s) 663
Bsp143I GATC 2 cut(s) 573, 616
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 2 cut(s) 418, 697
BspANI GGCC 3 cut(s) 466, 521, 585
BspCNI CTCAG 3 cut(s) 42, 195, 361
BspLI GGNNCC 5 cut(s) 174, 297, 475, 618, 695
BspPI GGATC 2 cut(s) 611, 624
BspT107I GGYRCC 1 cut(s) 693
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 92, 338, 612
BssMI GATC 2 cut(s) 573, 616
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 503
BstDEI CTNAG 4 cut(s) 8, 29, 182, 369
BstF5I GGATG 3 cut(s) 119, 357, 598
BstKTI GATC 2 cut(s) 576, 619
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 573, 616
BstMWI GCNNNNNNNGC 1 cut(s) 702
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 2 cut(s) 68, 167
BstSCI CCNGG 2 cut(s) 92, 337
BstV1I GCAGC 3 cut(s) 211, 257, 415
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 3 cut(s) 466, 521, 585
BtsCI GGATG 3 cut(s) 119, 357, 598
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 295, 464
CseI GACGC 1 cut(s) 325
CviAII CATG 2 cut(s) 65, 164
DdeI CTNAG 4 cut(s) 8, 29, 182, 369
DpnI GATC 2 cut(s) 575, 618
DpnII GATC 2 cut(s) 573, 616
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 236, 401
Eco88I CYCGRG 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 2 cut(s) 68, 167
FaiI YATR 8 cut(s) 66, 77, 165, 404, 457, 629, 631, 641
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 484, 516
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 64, 163
Fnu4HI GCNGC 4 cut(s) 225, 246, 429, 697
FokI GGATG 3 cut(s) 106, 364, 605
Fsp4HI GCNGC 4 cut(s) 225, 246, 429, 697
FspBI CTAG 2 cut(s) 581, 606
GluI GCNGC 4 cut(s) 225, 246, 429, 697
HaeIII GGCC 3 cut(s) 466, 521, 585
HapII CCGG 1 cut(s) 338
HgaI GACGC 1 cut(s) 325
Hin1II CATG 2 cut(s) 68, 167
HinfI GANTC 2 cut(s) 256, 332
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 327
Hpy188I TCNGA 5 cut(s) 9, 32, 370, 543, 561
Hpy188III TCNNGA 3 cut(s) 170, 311, 717
HpyAV CCTTC 5 cut(s) 122, 309, 376, 482, 486
HpyCH4V TGCA 4 cut(s) 163, 227, 245, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 702
HpyF3I CTNAG 4 cut(s) 8, 29, 182, 369
Hsp92II CATG 2 cut(s) 68, 167
Kzo9I GATC 2 cut(s) 573, 616
LmnI GCTCC 2 cut(s) 172, 473
Lsp1109I GCAGC 3 cut(s) 211, 257, 415
LweI GCATC 3 cut(s) 128, 342, 415
MaeI CTAG 2 cut(s) 581, 606
MalI GATC 2 cut(s) 575, 618
MboI GATC 2 cut(s) 573, 616
MboII GAAGA 6 cut(s) 6, 229, 385, 517, 520, 659
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 616
MluCI AATT 5 cut(s) 54, 441, 468, 549, 650
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 7 cut(s) 46, 57, 168, 190, 244, 607, 659
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 84, 479
MspA1I CMGCKG 2 cut(s) 418, 699
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 94, 339
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 3 cut(s) 226, 289, 537
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 702
NciI CCSGG 1 cut(s) 339
NdeII GATC 2 cut(s) 573, 616
NlaIII CATG 2 cut(s) 68, 167
NlaIV GGNNCC 5 cut(s) 174, 297, 475, 618, 695
NspI RCATGY 2 cut(s) 68, 167
PaeR7I CTCGAG 1 cut(s) 663
PctI GAATGC 3 cut(s) 226, 289, 537
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 256, 332
PkrI GCNGC 4 cut(s) 226, 247, 430, 698
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 5 cut(s) 174, 297, 475, 618, 695
PspPI GGNCC 2 cut(s) 295, 464
PspXI VCTCGAGB 1 cut(s) 663
PsuI RGATCY 1 cut(s) 616
SaqAI TTAA 2 cut(s) 84, 479
SatI GCNGC 4 cut(s) 225, 246, 429, 697
Sau3AI GATC 2 cut(s) 573, 616
Sau96I GGNCC 2 cut(s) 295, 464
ScrFI CCNGG 2 cut(s) 94, 339
SetI ASST 5 cut(s) 98, 160, 243, 294, 568
SfaNI GCATC 3 cut(s) 128, 342, 415
Sfr274I CTCGAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 663
SmlI CTYRAG 4 cut(s) 18, 278, 311, 663
SmoI CTYRAG 4 cut(s) 18, 278, 311, 663
Sse9I AATT 5 cut(s) 54, 441, 468, 549, 650
SsiI CCGC 2 cut(s) 418, 697
SspMI CTAG 2 cut(s) 581, 606
StyD4I CCNGG 2 cut(s) 92, 337
TaqI TCGA 2 cut(s) 423, 664
TasI AATT 5 cut(s) 54, 441, 468, 549, 650
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 256, 332
Tru1I TTAA 2 cut(s) 84, 479
Tru9I TTAA 2 cut(s) 84, 479
TscAI CASTG 1 cut(s) 183
TseI GCWGC 3 cut(s) 224, 245, 428
TspDTI ATGAA 1 cut(s) 660
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 54
XceI RCATGY 2 cut(s) 68, 167
XhoI CTCGAG 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 2 cut(s) 581, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.