RchiOBHm_Chr7g0179071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013063
Physical Location & Seq
Forward (+)
1495450 .. 1496948
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15959

Sequence Viewer

Length: 720 bp
ATGGCTCTGAGTTCTTCTCAAGCATTTCTCAGACCCTCAAATTTTCCTCTCCAAATTCCAACTCATGCTAAAGCCATAAACTTTAATCTTCCCAGATTTCCAACATCAAGAACCAGAGCAACCCTTGAAGGAAATGACCAAAGTGCCACAGCCACCCCTCTGCTTGCTCAGGAACCACTGCTCAGCAGAGAAGTTGAGGAGAGTGTGAAAGTGCTCAAGAATGCTGCAAAAGCAAGAAAGGTTGCAGCAGAGGAGATTCTGGCAGCTCTATCTGTGCTTGAGAATGCAAAACTGGACCCTGCTGGGTTTCTTGAAACGCTTGGTGGGACAGAATCACCAGGGAGAACTTGGATGCTCATTTTTACTTCTGGGAAGAAATTGAAGGGTGGTAGATACTTCCCTATTACAGCTGTTCAGCGGTTCGATGCTGCTGGAAAGAGAATTGAGAATGGAGTATATCTTGGGCCAATTGGAGCCTTAACATTTGAAGGAAGACTTTCTTGGAACAAGAGAATACTGGCCTTTGTTTTTGAGAGCATTAGGATAAAAATTGGAAGTTTGAAACCTTTGGAGATCAGTCTAGGCCAAAAGGATGACAGAGAGCCTAGCACCAAGGATCCTTTCTTTATATGGTTTTACATTGATGAAGAATTAGCAGTTGCTCGAGGAAAAAGTGGGGGGACTGCTTTCTGGTGCCGCTGTCATCGTGTAATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.39

Weight (kDa)

9.69

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18060
fragaria_vesca FvH4_5g16950 FvH4_5g16950 FvH4_5g16950
malus_domestica MD06G1223100.v1.1
prunus_persica Prupe.5G228200_v2.0.a1
pyrus_communis pycom14g19360
rosa_chinensis RchiOBHm_Chr7g0179071
rosa_laevigata RLG00000005388
rosa_multiflora Rmu_sc0000888.1_g000015
rosa_roxburghii Rroxscaffold_3G00274420
rosa_rugosa Rorug06G0420600 Rorug06G0420700.1
rosa_samantha Rh7AG020100 Rh7BG019800 Rh7CG021100 Rh7DG020600
rosa_wichuraiana Rw7G001670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 693
AciI CCGC 2 cut(s) 418, 697
AclWI GGATC 2 cut(s) 611, 624
AcsI RAATTY 2 cut(s) 40, 54
AgsI TTSAA 5 cut(s) 128, 314, 382, 488, 562
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 4 cut(s) 484, 516, 605, 637
AluBI AGCT 2 cut(s) 266, 410
AluI AGCT 2 cut(s) 266, 410
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 2 cut(s) 611, 624
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 3 cut(s) 464, 519, 583
ApeKI GCWGC 4 cut(s) 224, 245, 263, 428
ApoI RAATTY 2 cut(s) 40, 54
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 295, 464
AsuHPI GGTGA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 295
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 211, 257, 275, 415
BciT130I CCWGG 1 cut(s) 339
BfaI CTAG 2 cut(s) 581, 606
BisI GCNGC 5 cut(s) 225, 246, 264, 429, 697
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 5 cut(s) 226, 247, 265, 430, 698
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 295, 464
BmiI GGNNCC 5 cut(s) 174, 297, 475, 618, 695
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 342, 415
BpiI GAAGAC 1 cut(s) 499
BplI GAGNNNNNCTC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 200, 299
BsaJI CCNNGG 2 cut(s) 338, 612
Bse1I ACTGG 2 cut(s) 297, 522
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 338, 612
BseGI GGATG 2 cut(s) 357, 598
BseMII CTCAG 3 cut(s) 43, 182, 196
BseNI ACTGG 2 cut(s) 297, 522
BseRI GAGGAG 2 cut(s) 212, 266
BseXI GCAGC 4 cut(s) 211, 257, 275, 415
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 3 cut(s) 466, 521, 585
BshNI GGYRCC 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 663
BslFI GGGAC 2 cut(s) 340, 694
BsmFI GGGAC 2 cut(s) 340, 694
BsmI GAATGC 2 cut(s) 226, 289
BsnI GGCC 3 cut(s) 466, 521, 585
BsoBI CYCGRG 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 573, 616
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 2 cut(s) 418, 697
BspANI GGCC 3 cut(s) 466, 521, 585
BspCNI CTCAG 3 cut(s) 42, 181, 195
BspLI GGNNCC 5 cut(s) 174, 297, 475, 618, 695
BspPI GGATC 2 cut(s) 611, 624
BspT107I GGYRCC 1 cut(s) 693
BsrI ACTGG 2 cut(s) 297, 522
BssECI CCNNGG 2 cut(s) 338, 612
BssMI GATC 2 cut(s) 573, 616
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 8, 29, 168, 182
BstF5I GGATG 2 cut(s) 357, 598
BstKTI GATC 2 cut(s) 576, 619
BstMBI GATC 2 cut(s) 573, 616
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 211, 257, 275, 415
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 3 cut(s) 466, 521, 585
BtsCI GGATG 2 cut(s) 357, 598
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 295, 464
CviAII CATG 1 cut(s) 65
DdeI CTNAG 4 cut(s) 8, 29, 168, 182
DpnI GATC 2 cut(s) 575, 618
DpnII GATC 2 cut(s) 573, 616
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 1 cut(s) 68
FaiI YATR 5 cut(s) 66, 77, 457, 629, 631
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 484, 516
FaqI GGGAC 2 cut(s) 340, 694
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 5 cut(s) 225, 246, 264, 429, 697
FokI GGATG 2 cut(s) 364, 605
Fsp4HI GCNGC 5 cut(s) 225, 246, 264, 429, 697
FspBI CTAG 2 cut(s) 581, 606
GluI GCNGC 5 cut(s) 225, 246, 264, 429, 697
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 466, 521, 585
Hin1II CATG 1 cut(s) 68
HinfI GANTC 2 cut(s) 256, 332
HphI GGTGA 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 9, 32
Hpy188III TCNNGA 5 cut(s) 108, 170, 217, 311, 717
HpyAV CCTTC 3 cut(s) 122, 376, 482
HpyCH4V TGCA 3 cut(s) 227, 245, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 4 cut(s) 8, 29, 168, 182
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 573, 616
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 4 cut(s) 211, 257, 275, 415
LweI GCATC 2 cut(s) 342, 415
MaeI CTAG 2 cut(s) 581, 606
MalI GATC 2 cut(s) 575, 618
MboI GATC 2 cut(s) 573, 616
MboII GAAGA 5 cut(s) 6, 80, 385, 504, 659
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 7 cut(s) 40, 54, 377, 441, 468, 549, 650
MmeI TCCRAC 2 cut(s) 83, 125
MnlI CCTC 6 cut(s) 46, 57, 168, 190, 244, 659
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 84, 479
MspA1I CMGCKG 3 cut(s) 410, 418, 699
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 2 cut(s) 226, 289
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 2 cut(s) 573, 616
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 5 cut(s) 174, 297, 475, 618, 695
PaeR7I CTCGAG 1 cut(s) 663
PctI GAATGC 2 cut(s) 226, 289
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 256, 332
PkrI GCNGC 5 cut(s) 226, 247, 265, 430, 698
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 5 cut(s) 174, 297, 475, 618, 695
PspPI GGNCC 2 cut(s) 295, 464
PspXI VCTCGAGB 1 cut(s) 663
PsuI RGATCY 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 84, 479
SatI GCNGC 5 cut(s) 225, 246, 264, 429, 697
Sau3AI GATC 2 cut(s) 573, 616
Sau96I GGNCC 2 cut(s) 295, 464
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 243, 268, 412, 568
SfaNI GCATC 2 cut(s) 342, 415
Sfr274I CTCGAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 663
SmlI CTYRAG 4 cut(s) 18, 215, 278, 663
SmoI CTYRAG 4 cut(s) 18, 215, 278, 663
Sse9I AATT 7 cut(s) 40, 54, 377, 441, 468, 549, 650
SsiI CCGC 2 cut(s) 418, 697
SspMI CTAG 2 cut(s) 581, 606
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 612
TaqI TCGA 2 cut(s) 423, 664
TasI AATT 7 cut(s) 40, 54, 377, 441, 468, 549, 650
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 256, 332
Tru1I TTAA 2 cut(s) 84, 479
Tru9I TTAA 2 cut(s) 84, 479
TscAI CASTG 1 cut(s) 183
TseI GCWGC 4 cut(s) 224, 245, 263, 428
TspDTI ATGAA 1 cut(s) 660
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 40, 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 2 cut(s) 581, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.