AT1G18100

Phosphatidylethanolamine-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017153
Physical Location & Seq
Reverse (-)
6227217 .. 6230194
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18100.1

Sequence Viewer

Length: 522 bp
ATGGCGGCTTCTGTTGATCCTTTGGTGGTCGGAAGAGTGATCGGAGATGTGTTGGACATGTTCATCCCAACCGCCAATATGTCTGTCTACTTTGGCCCCAAACACATCACTAACGGCTGCGAGATCAAACCCTCCACCGCAGTCAATCCTCCAAAAGTCAACATCTCGGGCCATTCCGATGAGCTTTACACTCTCGTGATGACTGACCCGGACGCACCTAGCCCAAGCGAGCCGAACATGAGAGAATGGGTCCACTGGATTGTCGTGGATATTCCCGGAGGCACAAATCCCTCAAGAGGAAAAGAGATACTTCCATACATGGAACCAAGGCCACCAGTGGGGATTCACCGTTACATATTGGTACTTTTCCGGCAAAACTCACCGGTGGGTCTGATGGTGCAGCAGCCTCCATCACGAGCCAATTTCAGCACACGAATGTTCGCTGGACATTTCGATCTTGGTCTACCTGTGGCCACTGTCTATTTCAACGCCCAAAAGGAACCTGCTTCACGCAGACGCTAG

Protein Analysis

173

Amino Acids

19.13

Weight (kDa)

7.93

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 47 - 150 2.9e-17 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18100
fragaria_vesca FvH4_5g17130
malus_domestica MD06G1229900.v1.1
prunus_persica Prupe.5G230900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178661
rosa_laevigata RLG00000005425
rosa_roxburghii Rroxscaffold_3G00274730
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana Rw7G001430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 2 cut(s) 87, 463
AciI CCGC 3 cut(s) 5, 72, 138
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 471
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 296, 338
AflIII ACRYGT 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 487
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 4 cut(s) 94, 169, 329, 471
ApeKI GCWGC 3 cut(s) 117, 400, 403
AsiGI ACCGGT 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 95, 169, 250
AsuC2I CCSGG 2 cut(s) 209, 276
AsuHPI GGTGA 2 cut(s) 338, 372
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 473
BauI CACGAG 2 cut(s) 194, 414
BbvI GCAGC 3 cut(s) 104, 412, 415
BccI CCATC 2 cut(s) 388, 418
BceAI ACGGC 1 cut(s) 130
BcnI CCSGG 2 cut(s) 209, 276
BfaI CTAG 2 cut(s) 219, 520
BfuAI ACCTGC 1 cut(s) 511
BisI GCNGC 4 cut(s) 6, 118, 401, 404
BlsI GCNGC 4 cut(s) 7, 119, 402, 405
Bme1390I CCNGG 2 cut(s) 209, 276
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 95, 169, 250
BmiI GGNNCC 4 cut(s) 97, 251, 324, 501
BmrFI CCNGG 2 cut(s) 209, 276
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 209, 276
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 338
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 260, 335
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 296, 338
BseNI ACTGG 2 cut(s) 260, 335
BseXI GCAGC 3 cut(s) 104, 412, 415
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 4 cut(s) 96, 171, 331, 473
BshTI ACCGGT 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 4 cut(s) 209, 276, 370, 383
BslI CCNNNNNNNGG 2 cut(s) 296, 338
BsnI GGCC 4 cut(s) 96, 171, 331, 473
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 4 cut(s) 16, 39, 123, 454
BspACI CCGC 3 cut(s) 5, 72, 138
BspANI GGCC 4 cut(s) 96, 171, 331, 473
BspLI GGNNCC 4 cut(s) 97, 251, 324, 501
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 2 cut(s) 260, 335
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 4 cut(s) 16, 39, 123, 454
BssSI CACGAG 2 cut(s) 194, 414
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 2 cut(s) 194, 414
Bst4CI ACNGT 2 cut(s) 350, 478
Bst6I CTCTTC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 4 cut(s) 19, 42, 126, 457
BstMBI GATC 4 cut(s) 16, 39, 123, 454
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 207, 274
BstV1I GCAGC 3 cut(s) 104, 412, 415
BsuRI GGCC 4 cut(s) 96, 171, 331, 473
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 253, 342, 474
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 95, 169, 250
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 362
CspAI ACCGGT 1 cut(s) 382
CviAII CATG 3 cut(s) 58, 238, 319
CviQI GTAC 1 cut(s) 362
DpnI GATC 4 cut(s) 18, 41, 125, 456
DpnII GATC 4 cut(s) 16, 39, 123, 454
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 3 cut(s) 61, 241, 322
FaiI YATR 6 cut(s) 59, 80, 239, 316, 320, 356
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 3 cut(s) 57, 237, 318
FblI GTMKAC 2 cut(s) 87, 463
Fnu4HI GCNGC 4 cut(s) 6, 118, 401, 404
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 6, 118, 401, 404
FspBI CTAG 2 cut(s) 219, 520
GluI GCNGC 4 cut(s) 6, 118, 401, 404
HaeIII GGCC 4 cut(s) 96, 171, 331, 473
HapII CCGG 4 cut(s) 209, 276, 370, 383
HgaI GACGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 61, 241, 322
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 343
HpaII CCGG 4 cut(s) 209, 276, 370, 383
HphI GGTGA 2 cut(s) 338, 372
Hpy166II GTNNAC 4 cut(s) 88, 160, 253, 464
Hpy188I TCNGA 4 cut(s) 32, 44, 178, 393
Hpy188III TCNNGA 3 cut(s) 196, 294, 414
Hpy8I GTNNAC 4 cut(s) 88, 160, 253, 464
HpyCH4III ACNGT 2 cut(s) 350, 478
HpyCH4V TGCA 1 cut(s) 400
Hsp92II CATG 3 cut(s) 61, 241, 322
Kzo9I GATC 4 cut(s) 16, 39, 123, 454
LpnPI CCDG 9 cut(s) 222, 241, 289, 348, 383, 396, 429, 480, 516
Lsp1109I GCAGC 3 cut(s) 104, 412, 415
MaeI CTAG 2 cut(s) 219, 520
MaeIII GTNAC 1 cut(s) 350
MalI GATC 4 cut(s) 18, 41, 125, 456
MboI GATC 4 cut(s) 16, 39, 123, 454
MboII GAAGA 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 10, 33
MnlI CCTC 6 cut(s) 142, 159, 272, 290, 301, 417
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MslI CAYNNNNRTG 3 cut(s) 177, 194, 434
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 4 cut(s) 209, 276, 370, 383
MspR9I CCNGG 2 cut(s) 209, 276
NciI CCSGG 2 cut(s) 209, 276
NdeII GATC 4 cut(s) 16, 39, 123, 454
NlaIII CATG 3 cut(s) 61, 241, 322
NlaIV GGNNCC 4 cut(s) 97, 251, 324, 501
NspI RCATGY 1 cut(s) 61
OliI CACNNNNGTG 1 cut(s) 194
PciI ACATGT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 343
PfoI TCCNGGA 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 382
PkrI GCNGC 4 cut(s) 7, 119, 402, 405
PscI ACATGT 1 cut(s) 57
PspN4I GGNNCC 4 cut(s) 97, 251, 324, 501
PspPI GGNCC 3 cut(s) 95, 169, 250
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 3 cut(s) 177, 194, 434
SatI GCNGC 4 cut(s) 6, 118, 401, 404
Sau3AI GATC 4 cut(s) 16, 39, 123, 454
Sau96I GGNCC 3 cut(s) 95, 169, 250
ScrFI CCNGG 2 cut(s) 209, 276
SetI ASST 4 cut(s) 186, 220, 469, 505
SgrAI CRCCGGYG 1 cut(s) 382
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 3 cut(s) 177, 194, 434
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 421
SsiI CCGC 3 cut(s) 5, 72, 138
SspMI CTAG 2 cut(s) 219, 520
StyD4I CCNGG 2 cut(s) 207, 274
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 350, 478
TaqI TCGA 1 cut(s) 453
TasI AATT 1 cut(s) 421
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 3 cut(s) 260, 342, 481
TseI GCWGC 3 cut(s) 117, 400, 403
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 3 cut(s) 260, 342, 481
VpaK11BI GGWCC 1 cut(s) 250
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 87, 463
XspI CTAG 2 cut(s) 219, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.