MD06G1229900.v1.1

Protein MOTHER of FT and TF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017153
Physical Location & Seq
Reverse (-)
35964696 .. 35966613
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1229900.v1.1.491

Sequence Viewer

Length: 579 bp
ATGCATTGCTTAGCTTTCCTTTTCTTCCTAGTTTTTGCTCCTAATTTCCTTCCTGATCTCATGGCTGCCTCCGTTGATCCTCTCGTCGTCGGCCGAGTGATCGGCGATGTCGTGGACATGTTCGTCCCCACCCTGAGCATGTCAGTCTACTTTGGTTCCAAGCATGTCACCAATGGCTGTGACATCAAACCTTCCATGGCCATCAACCCCCCAAAAATCACCTTCACTGGTCACCCTGGCGAGCTCTACACCCTGGTGATGACTGACCCTGATGCTCCGAGTCCGAGTGAGCCAAGCATGAGGGAGTGGGTCCATTGGATCGTGTCTGATATCCCTGGAGGAACAAACCCTCTCAGAGGGAAAGAGATACTGCCGTACGTTGGTCCGAGGCCACCAGTGGGGATTCACCGCTACATTCTGGTGCTGTTTCAGCAGAAGGCTCCGGTGGGTTTGGTGGAGCAACCACCCTCTCGTGCCCATTTCAACACCCGCTTCTTTGCGGCGCAGCTCGACCTTGGACTGCCGGTTTCCACCGTCTACTTCAACTGCCAGAAGGAGCCAGCAAACAGGAGGCGCTGA

Protein Analysis

193

Amino Acids

21.3

Weight (kDa)

7.78

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 68 - 170 6.3e-18 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18100
fragaria_vesca FvH4_5g17130
malus_domestica MD06G1229900.v1.1
prunus_persica Prupe.5G230900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178661
rosa_laevigata RLG00000005425
rosa_roxburghii Rroxscaffold_3G00274730
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana Rw7G001430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 147, 537
AciI CCGC 3 cut(s) 409, 490, 500
AclWI GGATC 2 cut(s) 71, 326
AcoI YGGCCR 2 cut(s) 91, 198
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 356, 380, 398
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 484, 544
AjnI CCWGG 3 cut(s) 235, 252, 334
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 3 cut(s) 14, 244, 508
AluI AGCT 3 cut(s) 14, 244, 508
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 2 cut(s) 71, 326
AoxI GGCC 3 cut(s) 91, 198, 389
ApeKI GCWGC 2 cut(s) 65, 505
AspLEI GCGC 2 cut(s) 505, 576
AspS9I GGNCC 2 cut(s) 310, 383
AsuHPI GGTGA 5 cut(s) 160, 211, 224, 268, 398
AvaII GGWCC 2 cut(s) 310, 383
BaeGI GKGCMC 1 cut(s) 478
BaeI ACNNNNGTAYC 2 cut(s) 359, 392
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 1 cut(s) 246
BauI CACGAG 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 52, 517
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 3 cut(s) 237, 254, 336
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 577
BisI GCNGC 3 cut(s) 66, 501, 506
BlpI GCTNAGC 1 cut(s) 10
BlsI GCNGC 3 cut(s) 67, 502, 507
Bme1390I CCNGG 3 cut(s) 237, 254, 336
Bme18I GGWCC 2 cut(s) 310, 383
BmgT120I GGNCC 2 cut(s) 310, 383
BmiI GGNNCC 4 cut(s) 157, 311, 441, 558
BmrFI CCNGG 3 cut(s) 237, 254, 336
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 10
BsaJI CCNNGG 6 cut(s) 195, 235, 252, 334, 386, 514
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 380, 398
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 2 cut(s) 232, 395
Bse3DI GCAATG 1 cut(s) 4
BseBI CCWGG 3 cut(s) 237, 254, 336
BseDI CCNNGG 6 cut(s) 195, 235, 252, 334, 386, 514
BseLI CCNNNNNNNGG 3 cut(s) 356, 380, 398
BseMI GCAATG 1 cut(s) 4
BseMII CTCAG 2 cut(s) 125, 367
BseNI ACTGG 2 cut(s) 232, 395
BseSI GKGCMC 1 cut(s) 478
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 52, 517
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 93, 200, 391
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 443, 524
BsiWI CGTACG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 356, 380, 398
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 3 cut(s) 93, 200, 391
Bsp1286I GDGCHC 2 cut(s) 246, 478
Bsp143I GATC 4 cut(s) 55, 76, 99, 318
Bsp1720I GCTNAGC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 3 cut(s) 409, 490, 500
BspANI GGCC 3 cut(s) 93, 200, 391
BspCNI CTCAG 2 cut(s) 126, 366
BspLI GGNNCC 4 cut(s) 157, 311, 441, 558
BspPI GGATC 2 cut(s) 71, 326
BsrDI GCAATG 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 2 cut(s) 232, 395
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 6 cut(s) 195, 235, 252, 334, 386, 514
BssMI GATC 4 cut(s) 55, 76, 99, 318
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 195, 514
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 237, 254, 336
Bst4CI ACNGT 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 242, 561
BstDEI CTNAG 3 cut(s) 10, 134, 353
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 2 cut(s) 505, 576
BstKTI GATC 4 cut(s) 58, 79, 102, 321
BstMBI GATC 4 cut(s) 55, 76, 99, 318
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 3 cut(s) 237, 254, 336
BstNSI RCATGY 3 cut(s) 121, 142, 167
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 235, 252, 334
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 52, 517
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 3 cut(s) 93, 200, 391
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 225, 402
Cac8I GCNNGC 2 cut(s) 242, 561
CfoI GCGC 2 cut(s) 505, 576
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 310, 383
Csp6I GTAC 1 cut(s) 376
CviAII CATG 6 cut(s) 61, 118, 139, 164, 196, 298
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 10, 134, 353
DpnI GATC 4 cut(s) 57, 78, 101, 320
DpnII GATC 4 cut(s) 55, 76, 99, 318
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 2 cut(s) 91, 198
EagI CGGCCG 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 195, 514
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 310, 383
Eco52I CGGCCG 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 3 cut(s) 235, 252, 334
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 195, 514
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 2 cut(s) 195, 514
FaeI CATG 6 cut(s) 64, 121, 142, 167, 199, 301
FaiI YATR 6 cut(s) 62, 119, 140, 165, 197, 299
FaqI GGGAC 1 cut(s) 110
FatI CATG 6 cut(s) 60, 117, 138, 163, 195, 297
FauI CCCGC 1 cut(s) 497
FblI GTMKAC 2 cut(s) 147, 537
Fnu4HI GCNGC 3 cut(s) 66, 501, 506
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 66, 501, 506
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 504, 575
GluI GCNGC 3 cut(s) 66, 501, 506
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 3 cut(s) 93, 200, 391
HapII CCGG 2 cut(s) 443, 524
HhaI GCGC 2 cut(s) 505, 576
Hin1II CATG 6 cut(s) 64, 121, 142, 167, 199, 301
Hin6I GCGC 2 cut(s) 503, 574
HinP1I GCGC 2 cut(s) 503, 574
HinfI GANTC 2 cut(s) 280, 403
HpaII CCGG 2 cut(s) 443, 524
HphI GGTGA 5 cut(s) 160, 211, 224, 268, 398
Hpy166II GTNNAC 3 cut(s) 115, 148, 538
Hpy188I TCNGA 5 cut(s) 279, 285, 328, 356, 387
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 3 cut(s) 115, 148, 538
Hpy99I CGWCG 2 cut(s) 89, 92
HpyAV CCTTC 5 cut(s) 59, 201, 232, 430, 547
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 3 cut(s) 10, 134, 353
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 6 cut(s) 64, 121, 142, 167, 199, 301
HspAI GCGC 2 cut(s) 503, 574
Kzo9I GATC 4 cut(s) 55, 76, 99, 318
LmnI GCTCC 5 cut(s) 43, 280, 445, 457, 556
Lsp1109I GCAGC 2 cut(s) 52, 517
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 166, 179, 230
MalI GATC 4 cut(s) 57, 78, 101, 320
MboI GATC 4 cut(s) 55, 76, 99, 318
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 246, 478
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 43
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 9 cut(s) 79, 90, 294, 332, 350, 360, 381, 478, 564
Mox20I TGGCCA 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 254, 419
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 2 cut(s) 443, 524
MspR9I CCNGG 3 cut(s) 237, 254, 336
MvaI CCWGG 3 cut(s) 237, 254, 336
MwoI GCNNNNNNNGC 1 cut(s) 430
NcoI CCATGG 1 cut(s) 195
NdeII GATC 4 cut(s) 55, 76, 99, 318
NlaIII CATG 6 cut(s) 64, 121, 142, 167, 199, 301
NlaIV GGNNCC 4 cut(s) 157, 311, 441, 558
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 3 cut(s) 166, 179, 230
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 121, 142, 167
OliI CACNNNNGTG 1 cut(s) 254
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 1 cut(s) 403
Pfl23II CGTACG 1 cut(s) 375
PkrI GCNGC 3 cut(s) 67, 502, 507
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PscI ACATGT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 235, 252, 334
PspEI GGTNACC 1 cut(s) 230
PspGI CCWGG 3 cut(s) 235, 252, 334
PspLI CGTACG 1 cut(s) 375
PspN4I GGNNCC 4 cut(s) 157, 311, 441, 558
PspPI GGNCC 2 cut(s) 310, 383
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 2 cut(s) 254, 419
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 3 cut(s) 66, 501, 506
Sau3AI GATC 4 cut(s) 55, 76, 99, 318
Sau96I GGNCC 2 cut(s) 310, 383
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 3 cut(s) 237, 254, 336
SduI GDGCHC 2 cut(s) 246, 478
SetI ASST 7 cut(s) 16, 193, 224, 246, 381, 510, 516
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 2 cut(s) 310, 383
SmiMI CAYNNNNRTG 2 cut(s) 254, 419
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 409, 490, 500
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 235, 252, 334
StyI CCWWGG 2 cut(s) 195, 514
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 510
TasI AATT 1 cut(s) 43
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 403
TscAI CASTG 2 cut(s) 232, 402
TseFI GTSAC 3 cut(s) 166, 179, 230
TseI GCWGC 2 cut(s) 65, 505
Tsp45I GTSAC 3 cut(s) 166, 179, 230
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 2 cut(s) 232, 402
VpaK11BI GGWCC 2 cut(s) 310, 383
XagI CCTNNNNNAGG 1 cut(s) 354
XceI RCATGY 3 cut(s) 121, 142, 167
XmiI GTMKAC 2 cut(s) 147, 537
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.