Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017153

Physical Location & Seq

Genomic Coordinates Reverse (-)

17623536 .. 17627346

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGCCTCCGTTGATCCTCTCGTTGTTGGGCGAGTGATCGGAGATGTGGTGGACATGTTTGTCCCAACTGTGAACATGTCCGTCTACTTTGGGTCCAAGCATGTCACCAATGGCTGCGATATCAAACCTTCCATGGCCATCAACCCCCCCAAGATCACAGTCTCTGGTCAGCCCGGCGAGCTCTACACTCTGGTGATGACTGACCCCGATGCTCCGAGCCCGAGTGAGCCGAGCATGAGGGAGTGGGTCCATTGGATCGTGGCTGACATCCCTGGAGGAACAAGCCCTGTTAGAGGGAAAGAGATACTGGCTTACGTGGGTCCGAGGCCACCAGTGGGAATTCACCGCTACATTCTGGTGCTGTTTCAGCAGAAGGGTCCGATGGGGCTGGTGGAGCAGCCATCCTCTCGTGCGCACTTCAACACTCGGTTTTTCGCTGCGCAGCTCGATCTTGGATTGCCTGTTTCCACCGTCTACTTCAACTCCCAGAAGGAACCAGCAAACAGGAGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010030 GO:0010033 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

8.79

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18100
fragaria_vesca	FvH4_5g17130
malus_domestica	MD06G1229900.v1.1
prunus_persica	Prupe.5G230900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178661
rosa_laevigata	RLG00000005425
rosa_roxburghii	Rroxscaffold_3G00274730
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana	Rw7G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc16I	TGCGCA	2 cut(s)	417, 444
AccI	GTMKAC	2 cut(s)	87, 477
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	2 cut(s)	11, 266
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	296, 338
AflIII	ACRYGT	2 cut(s)	57, 78
AgsI	TTSAA	2 cut(s)	424, 484
AjnI	CCWGG	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	184, 448
AluI	AGCT	2 cut(s)	184, 448
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	11, 266
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	2 cut(s)	138, 329
ApeKI	GCWGC	5 cut(s)	5, 117, 400, 440, 445
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	3 cut(s)	418, 445, 516
AspS9I	GGNCC	4 cut(s)	96, 250, 323, 380
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	3 cut(s)	100, 208, 338
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	4 cut(s)	96, 250, 323, 380
BalI	TGGCCA	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	186, 224
BauI	CACGAG	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	104, 412, 427, 457
BccI	CCATC	3 cut(s)	149, 379, 412
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	5 cut(s)	6, 118, 401, 441, 446
BlsI	GCNGC	5 cut(s)	7, 119, 402, 442, 447
Bme1390I	CCNGG	2 cut(s)	177, 276
Bme18I	GGWCC	4 cut(s)	96, 250, 323, 380
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	4 cut(s)	96, 250, 323, 380
BmiI	GGNNCC	5 cut(s)	97, 251, 324, 381, 498
BmrFI	CCNGG	2 cut(s)	177, 276
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	135, 274, 326
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 338
Bse1I	ACTGG	2 cut(s)	315, 335
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	135, 274, 326
BseGI	GGATG	2 cut(s)	270, 404
BseLI	CCNNNNNNNGG	2 cut(s)	296, 338
BseNI	ACTGG	2 cut(s)	315, 335
BseXI	GCAGC	4 cut(s)	104, 412, 427, 457
BshFI	GGCC	2 cut(s)	140, 331
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	296, 338
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	140, 331
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	186, 224
Bsp143I	GATC	5 cut(s)	16, 39, 156, 258, 451
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	140, 331
BspLI	GGNNCC	5 cut(s)	97, 251, 324, 381, 498
BspPI	GGATC	2 cut(s)	11, 266
BsrI	ACTGG	2 cut(s)	315, 335
BssECI	CCNNGG	3 cut(s)	135, 274, 326
BssMI	GATC	5 cut(s)	16, 39, 156, 258, 451
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	73, 163, 475
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	135
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	270, 404
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	3 cut(s)	418, 445, 516
BstKTI	GATC	5 cut(s)	19, 42, 159, 261, 454
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	16, 39, 156, 258, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 370, 397
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	3 cut(s)	61, 82, 107
BstSCI	CCNGG	2 cut(s)	175, 274
BstV1I	GCAGC	4 cut(s)	104, 412, 427, 457
BsuRI	GGCC	2 cut(s)	140, 331
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	270, 404
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	3 cut(s)	418, 445, 516
Cfr13I	GGNCC	4 cut(s)	96, 250, 323, 380
CviAII	CATG	5 cut(s)	58, 79, 104, 136, 238
DpnI	GATC	5 cut(s)	18, 41, 158, 260, 453
DpnII	GATC	5 cut(s)	16, 39, 156, 258, 451
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	186, 224
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	4 cut(s)	96, 250, 323, 380
Eco53kI	GAGCTC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	186, 224
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	5 cut(s)	61, 82, 107, 139, 241
FaiI	YATR	5 cut(s)	59, 80, 105, 137, 239
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	57, 78, 103, 135, 237
FblI	GTMKAC	2 cut(s)	87, 477
Fnu4HI	GCNGC	5 cut(s)	6, 118, 401, 441, 446
FokI	GGATG	2 cut(s)	257, 391
FriOI	GRGCYC	2 cut(s)	186, 224
Fsp4HI	GCNGC	5 cut(s)	6, 118, 401, 441, 446
FspAI	RTGCGCAY	1 cut(s)	417
FspI	TGCGCA	2 cut(s)	417, 444
GlaI	GCGC	3 cut(s)	417, 444, 515
GluI	GCNGC	5 cut(s)	6, 118, 401, 441, 446
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	140, 331
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	3 cut(s)	418, 445, 516
Hin1II	CATG	5 cut(s)	61, 82, 107, 139, 241
Hin6I	GCGC	3 cut(s)	416, 443, 514
HinP1I	GCGC	3 cut(s)	416, 443, 514
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	3 cut(s)	100, 208, 338
Hpy166II	GTNNAC	4 cut(s)	55, 76, 88, 478
Hpy188I	TCNGA	4 cut(s)	44, 219, 327, 384
Hpy8I	GTNNAC	4 cut(s)	55, 76, 88, 478
HpyAV	CCTTC	3 cut(s)	141, 370, 487
HpyCH4III	ACNGT	3 cut(s)	73, 163, 475
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 370, 397
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	5 cut(s)	61, 82, 107, 139, 241
HspAI	GCGC	3 cut(s)	416, 443, 514
Kzo9I	GATC	5 cut(s)	16, 39, 156, 258, 451
LmnI	GCTCC	2 cut(s)	220, 397
Lsp1109I	GCAGC	4 cut(s)	104, 412, 427, 457
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	18, 41, 158, 260, 453
MboI	GATC	5 cut(s)	16, 39, 156, 258, 451
MhlI	GDGCHC	2 cut(s)	186, 224
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	8 cut(s)	19, 30, 234, 272, 290, 321, 418, 504
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MslI	CAYNNNNRTG	2 cut(s)	194, 359
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	177, 276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	181, 370, 397
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	16, 39, 156, 258, 451
NlaIII	CATG	5 cut(s)	61, 82, 107, 139, 241
NlaIV	GGNNCC	5 cut(s)	97, 251, 324, 381, 498
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	106
NsbI	TGCGCA	2 cut(s)	417, 444
NspI	RCATGY	3 cut(s)	61, 82, 107
OliI	CACNNNNGTG	1 cut(s)	194
PciI	ACATGT	2 cut(s)	57, 78
PkrI	GCNGC	5 cut(s)	7, 119, 402, 442, 447
Ppu21I	YACGTR	1 cut(s)	319
PscI	ACATGT	2 cut(s)	57, 78
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	97, 251, 324, 381, 498
PspPI	GGNCC	4 cut(s)	96, 250, 323, 380
PstNI	CAGNNNCTG	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	194, 359
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	5 cut(s)	6, 118, 401, 441, 446
Sau3AI	GATC	5 cut(s)	16, 39, 156, 258, 451
Sau96I	GGNCC	4 cut(s)	96, 250, 323, 380
ScrFI	CCNGG	2 cut(s)	177, 276
SduI	GDGCHC	2 cut(s)	186, 224
SetI	ASST	4 cut(s)	133, 186, 321, 450
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	4 cut(s)	96, 250, 323, 380
SmiMI	CAYNNNNRTG	2 cut(s)	194, 359
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	349
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	175, 274
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	73, 163, 475
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	450
TasI	AATT	1 cut(s)	342
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	5, 117, 400, 440, 445
Tsp45I	GTSAC	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	4 cut(s)	96, 250, 323, 380
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	3 cut(s)	61, 82, 107
XmiI	GTMKAC	2 cut(s)	87, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.