Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017153

Physical Location & Seq

Genomic Coordinates Forward (+)

1158911 .. 1160465

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTTGATCAGCTGCTTCTTGCTCTTCATTTTCTTCACTCTGTTTTCGTTTTCTCCGACACCATGGCCGCCTCCGTTGATCCTTTGGTCGTCGGCCGCGTGATCGGCGATGTGGTCGACATGTTTGTCCCGACTGTGAACATGTCTGTTTACTTTGGTTCAAAGCACGTCACCAATGGCTGTGACATCAAACCCTCCATCGCCGTTAGCCCTCCGAAAGTGACCTTCTCTGGTCACCCCGGCGAGCTTTACACCCTGGTCATGACTGATCCCGATGCTCCGAGTCCAAGTGAGCCTAGCATGCGAGAATGGGTTCATTGGATCATGGCTGATATTCCTGGAGGAACAAATCCTATTAGAGGAAAAGAGATACTGCCCTACCTCGGACCAAGGCCACCGGTGGGAATTCACCGTTACATTTTGGTGCTGTTTCAGCAGAAGGTGCCTATGGGACTCGTGGATCAACCCCCGACTCGAGCCCATTTCAACACTCGCTATTTCGCAGCGCAGCTTGACCTAGGCCTGCCCGTGTCCACAGTGTATTTTAATTCACAGAAGGAGCCGGCCAACCGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010030 GO:0010033 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

7.06

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	68 - 171	2.6e-18	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18100
fragaria_vesca	FvH4_5g17130
malus_domestica	MD06G1229900.v1.1
prunus_persica	Prupe.5G230900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178661
rosa_laevigata	RLG00000005425
rosa_roxburghii	Rroxscaffold_3G00274730
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana	Rw7G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	69, 97
AclWI	GGATC	4 cut(s)	74, 263, 329, 468
AcoI	YGGCCR	3 cut(s)	66, 94, 564
AcsI	RAATTY	1 cut(s)	405
AfiI	CCNNNNNNNGG	4 cut(s)	359, 383, 401, 573
AflIII	ACRYGT	2 cut(s)	120, 141
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	162, 487
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	255, 337
AluBI	AGCT	3 cut(s)	13, 247, 511
AluI	AGCT	3 cut(s)	13, 247, 511
AlwI	GGATC	4 cut(s)	74, 263, 329, 468
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	5 cut(s)	66, 94, 392, 520, 564
ApeKI	GCWGC	3 cut(s)	13, 503, 508
ApoI	RAATTY	1 cut(s)	405
AsiGI	ACCGGT	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	163, 227, 401
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	386
AvrII	CCTAGG	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	515, 520
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	257, 339
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	2 cut(s)	297, 518
BisI	GCNGC	5 cut(s)	14, 69, 97, 504, 509
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	5 cut(s)	15, 70, 98, 505, 510
Bme1390I	CCNGG	3 cut(s)	240, 257, 339
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	474
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	444, 561
BmrFI	CCNGG	3 cut(s)	240, 257, 339
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	240
BsaJI	CCNNGG	6 cut(s)	63, 238, 255, 382, 389, 517
BsaWI	WCCGGW	2 cut(s)	397, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 383, 401, 573
Bse118I	RCCGGY	2 cut(s)	397, 562
BseBI	CCWGG	2 cut(s)	257, 339
BseDI	CCNNGG	6 cut(s)	63, 238, 255, 382, 389, 517
BseLI	CCNNNNNNNGG	4 cut(s)	359, 383, 401, 573
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	515, 520
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	68, 96, 394, 522, 566
BshNI	GGYRCC	1 cut(s)	442
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	4 cut(s)	240, 398, 563, 571
BslFI	GGGAC	2 cut(s)	113, 465
BslI	CCNNNNNNNGG	4 cut(s)	359, 383, 401, 573
BsmFI	GGGAC	2 cut(s)	113, 465
BsnI	GGCC	5 cut(s)	68, 96, 394, 522, 566
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	69, 97
BspANI	GGCC	5 cut(s)	68, 96, 394, 522, 566
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	444, 561
BspPI	GGATC	4 cut(s)	74, 263, 329, 468
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	442
BsrFI	RCCGGY	2 cut(s)	397, 562
BssAI	RCCGGY	2 cut(s)	397, 562
BssECI	CCNNGG	6 cut(s)	63, 238, 255, 382, 389, 517
BssMI	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	3 cut(s)	63, 389, 517
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	257, 339
Bst4CI	ACNGT	3 cut(s)	136, 413, 538
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstC8I	GCNNGC	4 cut(s)	245, 302, 524, 564
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	6 cut(s)	10, 82, 105, 271, 324, 463
BstMBI	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 105, 301, 433, 442
BstNI	CCWGG	2 cut(s)	257, 339
BstNSI	RCATGY	3 cut(s)	124, 145, 304
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	238, 255, 337
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	515, 520
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	5 cut(s)	68, 96, 394, 522, 566
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	2 cut(s)	123, 184
BtrI	CACGTC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	4 cut(s)	245, 302, 524, 564
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	2 cut(s)	397, 562
Cfr13I	GGNCC	1 cut(s)	386
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	6 cut(s)	64, 121, 142, 262, 301, 325
DpnI	GATC	6 cut(s)	9, 81, 104, 270, 323, 462
DpnII	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	3 cut(s)	66, 94, 564
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	63, 389, 517
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	386
Eco52I	CGGCCG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO65I	GGTNACC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	255, 337
EcoT14I	CCWWGG	3 cut(s)	63, 389, 517
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	3 cut(s)	63, 389, 517
FaeI	CATG	6 cut(s)	67, 124, 145, 265, 304, 328
FaiI	YATR	7 cut(s)	65, 122, 143, 263, 302, 326, 449
FaqI	GGGAC	2 cut(s)	113, 465
FatI	CATG	6 cut(s)	63, 120, 141, 261, 300, 324
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	14, 69, 97, 504, 509
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	5 cut(s)	14, 69, 97, 504, 509
FspBI	CTAG	2 cut(s)	297, 518
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	5 cut(s)	14, 69, 97, 504, 509
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	68, 96, 394, 522, 566
HapII	CCGG	4 cut(s)	240, 398, 563, 571
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	6 cut(s)	67, 124, 145, 265, 304, 328
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	283, 453, 472
HpaII	CCGG	4 cut(s)	240, 398, 563, 571
HphI	GGTGA	3 cut(s)	163, 227, 401
Hpy166II	GTNNAC	4 cut(s)	118, 139, 151, 534
Hpy188I	TCNGA	4 cut(s)	58, 216, 282, 386
Hpy188III	TCNNGA	3 cut(s)	130, 262, 272
Hpy8I	GTNNAC	4 cut(s)	118, 139, 151, 534
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	235, 433, 550
HpyCH4III	ACNGT	3 cut(s)	136, 413, 538
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 105, 301, 433, 442
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	67, 124, 145, 265, 304, 328
HspAI	GCGC	1 cut(s)	506
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	283, 559
LpnPI	CCDG	9 cut(s)	216, 242, 253, 269, 324, 351, 411, 536, 576
Lsp1109I	GCAGC	2 cut(s)	515, 520
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	297, 518
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	5 cut(s)	169, 182, 220, 233, 413
MalI	GATC	6 cut(s)	9, 81, 104, 270, 323, 462
MboI	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
MboII	GAAGA	2 cut(s)	17, 26
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	2 cut(s)	405, 547
MlyI	GAGTC	3 cut(s)	292, 447, 466
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	82, 205, 222, 335, 353, 392, 567
MroNI	GCCGGC	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	4 cut(s)	240, 398, 563, 571
MspR9I	CCNGG	3 cut(s)	240, 257, 339
MvaI	CCWGG	2 cut(s)	257, 339
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	10, 105, 301, 433, 442
NaeI	GCCGGC	1 cut(s)	564
NciI	CCSGG	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
NgoMIV	GCCGGC	1 cut(s)	562
NlaIII	CATG	6 cut(s)	67, 124, 145, 265, 304, 328
NlaIV	GGNNCC	2 cut(s)	444, 561
NmuCI	GTSAC	4 cut(s)	169, 182, 220, 233
NspI	RCATGY	3 cut(s)	124, 145, 304
PaeI	GCATGC	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	2 cut(s)	120, 141
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 96
PdiI	GCCGGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	15, 70, 98, 505, 510
PleI	GAGTC	3 cut(s)	291, 447, 466
PpsI	GAGTC	3 cut(s)	291, 447, 466
PscI	ACATGT	2 cut(s)	120, 141
Psp6I	CCWGG	2 cut(s)	255, 337
PspEI	GGTNACC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	255, 337
PspN4I	GGNNCC	2 cut(s)	444, 561
PspPI	GGNCC	1 cut(s)	386
PspXI	VCTCGAGB	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	5 cut(s)	14, 69, 97, 504, 509
Sau3AI	GATC	6 cut(s)	7, 79, 102, 268, 321, 460
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	3 cut(s)	292, 447, 466
ScrFI	CCNGG	3 cut(s)	240, 257, 339
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	8 cut(s)	15, 171, 227, 249, 384, 444, 513, 519
SfaNI	GCATC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	474
SgrAI	CRCCGGYG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	405, 547
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	2 cut(s)	69, 97
SspMI	CTAG	2 cut(s)	297, 518
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	238, 255, 337
StyI	CCWWGG	3 cut(s)	63, 389, 517
TaaI	ACNGT	3 cut(s)	136, 413, 538
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	117, 475
TasI	AATT	2 cut(s)	405, 547
TauI	GCSGC	2 cut(s)	71, 99
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	4 cut(s)	169, 182, 220, 233
TseI	GCWGC	3 cut(s)	13, 503, 508
Tsp45I	GTSAC	4 cut(s)	169, 182, 220, 233
TspDTI	ATGAA	2 cut(s)	17, 305
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	3 cut(s)	124, 145, 304
XhoI	CTCGAG	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	297, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.