FvH4_5g17130

Protein MOTHER of FT and TF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017153
Physical Location & Seq
Reverse (-)
9779242 .. 9781129
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17130.t1

Sequence Viewer

Length: 714 bp
ATGCATGCACCGGAGGACAGGTCCCATTTCATTTTTACTCTCCTATATAAACCCTACGCTCCTCTCCTCTGCCCTCTGCGCACAAACTCAGAGAGCTTTGCATGCTTGCTCAGCTGCTTCTTGCTCTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTGTTTTCGTTTTTTCCGATTACCATGGCCGTCTCCGTTGATCCTTTGGTCGTCGGCCGCGTGATCGGCGATGTGGTCGACATGTTTGTCCCGACTGTGAACATGTCTGTTTACTTTGGTTCAAAGCATGTCACCAATGGCTGTGACATCAAACCCTCCATCGCCGTCAGCCCTCCCAAGGTGACCTTCTCCGGTCACCCCGGCGAGCTTTACACCCTGGTCATGACTGATCCCGATGCCCCGAGCCCAAGCGAGCCTAGCATGCGAGAATGGGTTCACTGGATCCTGGCTGATATCCCTGGAGGAACAAATCCTATTAGAGGAAAAGAGATACTTCCCTATGTCGGACCAAGGCCGCCGGTGGGGATTCACCGTTACATTTTGGTGTTGTTTCAGCAGAAGGCGCCAATGGGTCTCGTCGAGCAACCGCCGACGAGAGCCCATTTCAACACTCGCTATTTCGCAGCGCAGCTTGACCTAGGCCTGCCCGTGTCCACCGTGTATTTTAATGCACAGAAGGAGCCGGCCAACCGGAGGCGTTGA

Protein Analysis

238

Amino Acids

26.85

Weight (kDa)

8.35

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 112 - 214 5e-18 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18100
fragaria_vesca FvH4_5g17130
malus_domestica MD06G1229900.v1.1
prunus_persica Prupe.5G230900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178661
rosa_laevigata RLG00000005425
rosa_roxburghii Rroxscaffold_3G00274730
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana Rw7G001430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 231
AciI CCGC 3 cut(s) 229, 527, 599
AclWI GGATC 4 cut(s) 206, 395, 448, 461
AcoI YGGCCR 3 cut(s) 198, 226, 696
AcyI GRCGYC 1 cut(s) 575
AfiI CCNNNNNNNGG 5 cut(s) 349, 491, 515, 533, 705
AflIII ACRYGT 2 cut(s) 252, 273
AgsI TTSAA 2 cut(s) 294, 619
AjnI CCWGG 3 cut(s) 387, 456, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 96, 114, 379, 643
AluI AGCT 4 cut(s) 96, 114, 379, 643
Alw26I GTCTC 2 cut(s) 208, 590
AlwI GGATC 4 cut(s) 206, 395, 448, 461
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 5 cut(s) 198, 226, 524, 652, 696
ApeKI GCWGC 3 cut(s) 114, 635, 640
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 649
AspLEI GCGC 3 cut(s) 81, 577, 640
AspS9I GGNCC 2 cut(s) 21, 518
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 4 cut(s) 295, 359, 364, 533
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 2 cut(s) 21, 518
AvrII CCTAGG 1 cut(s) 649
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 419, 613
BbvI GCAGC 3 cut(s) 101, 647, 652
BccI CCATC 1 cut(s) 338
BceAI ACGGC 2 cut(s) 185, 320
BciT130I CCWGG 3 cut(s) 389, 458, 471
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 208, 590
BfaI CTAG 2 cut(s) 429, 650
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 5 cut(s) 115, 229, 527, 636, 641
BlnI CCTAGG 1 cut(s) 649
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 5 cut(s) 116, 230, 528, 637, 642
Bme1390I CCNGG 4 cut(s) 372, 389, 458, 471
Bme18I GGWCC 2 cut(s) 21, 518
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 21, 518
BmiI GGNNCC 4 cut(s) 23, 455, 576, 693
BmrFI CCNGG 4 cut(s) 372, 389, 458, 471
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 7 cut(s) 195, 348, 370, 387, 469, 521, 649
BsaWI WCCGGW 3 cut(s) 10, 362, 702
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 491, 515, 533, 705
Bse118I RCCGGY 2 cut(s) 529, 694
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 3 cut(s) 389, 458, 471
BseDI CCNNGG 7 cut(s) 195, 348, 370, 387, 469, 521, 649
BseLI CCNNNNNNNGG 5 cut(s) 349, 491, 515, 533, 705
BseMII CTCAG 2 cut(s) 102, 124
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 51, 56
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 101, 647, 652
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 5 cut(s) 200, 228, 526, 654, 698
BshNI GGYRCC 1 cut(s) 574
BsiEI CGRYCG 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 6 cut(s) 11, 363, 372, 530, 695, 703
BslFI GGGAC 2 cut(s) 7, 245
BslI CCNNNNNNNGG 5 cut(s) 349, 491, 515, 533, 705
BsmAI GTCTC 2 cut(s) 208, 590
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 7, 245
BsnI GGCC 5 cut(s) 200, 228, 526, 654, 698
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 419, 613
Bsp143I GATC 4 cut(s) 211, 234, 400, 453
Bsp1720I GCTNAGC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 3 cut(s) 229, 527, 599
BspANI GGCC 5 cut(s) 200, 228, 526, 654, 698
BspCNI CTCAG 2 cut(s) 101, 123
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 4 cut(s) 23, 455, 576, 693
BspPI GGATC 4 cut(s) 206, 395, 448, 461
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 590
BsrFI RCCGGY 2 cut(s) 529, 694
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 2 cut(s) 529, 694
BssECI CCNNGG 7 cut(s) 195, 348, 370, 387, 469, 521, 649
BssMI GATC 4 cut(s) 211, 234, 400, 453
BssNI GRCGYC 1 cut(s) 575
BssT1I CCWWGG 4 cut(s) 195, 348, 521, 649
Bst2UI CCWGG 3 cut(s) 389, 458, 471
Bst4CI ACNGT 3 cut(s) 268, 545, 670
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 575
BstC8I GCNNGC 8 cut(s) 6, 103, 107, 377, 425, 434, 656, 696
BstDEI CTNAG 2 cut(s) 88, 110
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 2 cut(s) 352, 365
BstENI CCTNNNNNAGG 1 cut(s) 489
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 3 cut(s) 81, 577, 640
BstKTI GATC 4 cut(s) 214, 237, 403, 456
BstMAI GTCTC 2 cut(s) 208, 590
BstMBI GATC 4 cut(s) 211, 234, 400, 453
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 7 cut(s) 78, 102, 111, 237, 429, 433, 574
BstNI CCWGG 3 cut(s) 389, 458, 471
BstNSI RCATGY 6 cut(s) 8, 105, 256, 277, 302, 436
BstPI GGTNACC 2 cut(s) 352, 365
BstSCI CCNGG 4 cut(s) 370, 387, 456, 469
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 101, 647, 652
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 5 cut(s) 200, 228, 526, 654, 698
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 2 cut(s) 255, 316
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 8 cut(s) 6, 103, 107, 377, 425, 434, 656, 696
CciI TCATGA 1 cut(s) 393
CfoI GCGC 3 cut(s) 81, 577, 640
Cfr10I RCCGGY 2 cut(s) 529, 694
Cfr13I GGNCC 2 cut(s) 21, 518
CviAII CATG 8 cut(s) 5, 102, 196, 253, 274, 299, 394, 433
DdeI CTNAG 2 cut(s) 88, 110
DinI GGCGCC 1 cut(s) 576
DpnI GATC 4 cut(s) 213, 236, 402, 455
DpnII GATC 4 cut(s) 211, 234, 400, 453
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 3 cut(s) 198, 226, 696
EagI CGGCCG 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 4 cut(s) 195, 348, 521, 649
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 2 cut(s) 419, 613
Eco31I GGTCTC 1 cut(s) 590
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 21, 518
Eco52I CGGCCG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 412
Eco91I GGTNACC 2 cut(s) 352, 365
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 21
EcoO65I GGTNACC 2 cut(s) 352, 365
EcoRII CCWGG 3 cut(s) 387, 456, 469
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 4 cut(s) 195, 348, 521, 649
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 419, 613
EgeI GGCGCC 1 cut(s) 576
EheI GGCGCC 1 cut(s) 576
ErhI CCWWGG 4 cut(s) 195, 348, 521, 649
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 8 cut(s) 8, 105, 199, 256, 277, 302, 397, 436
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 489, 521
FaqI GGGAC 2 cut(s) 7, 245
FatI CATG 8 cut(s) 4, 101, 195, 252, 273, 298, 393, 432
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 115, 229, 527, 636, 641
FriOI GRGCYC 2 cut(s) 419, 613
Fsp4HI GCNGC 5 cut(s) 115, 229, 527, 636, 641
FspBI CTAG 2 cut(s) 429, 650
FspI TGCGCA 1 cut(s) 80
GlaI GCGC 3 cut(s) 80, 576, 639
GluI GCNGC 5 cut(s) 115, 229, 527, 636, 641
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 5 cut(s) 200, 228, 526, 654, 698
HapII CCGG 6 cut(s) 11, 363, 372, 530, 695, 703
HhaI GCGC 3 cut(s) 81, 577, 640
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 8 cut(s) 8, 105, 199, 256, 277, 302, 397, 436
Hin6I GCGC 3 cut(s) 79, 575, 638
HinP1I GCGC 3 cut(s) 79, 575, 638
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 538
HpaII CCGG 6 cut(s) 11, 363, 372, 530, 695, 703
HphI GGTGA 4 cut(s) 295, 359, 364, 533
Hpy166II GTNNAC 5 cut(s) 250, 271, 283, 448, 666
Hpy188I TCNGA 3 cut(s) 91, 189, 518
Hpy188III TCNNGA 3 cut(s) 262, 394, 404
Hpy8I GTNNAC 5 cut(s) 250, 271, 283, 448, 666
Hpy99I CGWCG 3 cut(s) 227, 593, 607
HpyAV CCTTC 3 cut(s) 367, 565, 682
HpyCH4III ACNGT 3 cut(s) 268, 545, 670
HpyCH4V TGCA 4 cut(s) 4, 8, 101, 683
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 102, 111, 237, 429, 433, 574
HpyF3I CTNAG 2 cut(s) 88, 110
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 8 cut(s) 8, 105, 199, 256, 277, 302, 397, 436
HspAI GCGC 3 cut(s) 79, 575, 638
KasI GGCGCC 1 cut(s) 574
KroI GCCGGC 1 cut(s) 694
KroNI GCCGGC 1 cut(s) 696
Kzo9I GATC 4 cut(s) 211, 234, 400, 453
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 64, 691
Lsp1109I GCAGC 3 cut(s) 101, 647, 652
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 429, 650
MaeIII GTNAC 5 cut(s) 301, 314, 352, 365, 545
MalI GATC 4 cut(s) 213, 236, 402, 455
MboI GATC 4 cut(s) 211, 234, 400, 453
MflI RGATCY 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 419, 613
Mly113I GGCGCC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 9 cut(s) 7, 72, 77, 84, 337, 354, 467, 485, 699
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 6 cut(s) 11, 363, 372, 530, 695, 703
MspR9I CCNGG 4 cut(s) 372, 389, 458, 471
MvaI CCWGG 3 cut(s) 389, 458, 471
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 7 cut(s) 78, 102, 111, 237, 429, 433, 574
NaeI GCCGGC 1 cut(s) 696
NarI GGCGCC 1 cut(s) 575
NciI CCSGG 1 cut(s) 372
NcoI CCATGG 1 cut(s) 195
NdeII GATC 4 cut(s) 211, 234, 400, 453
NgoMIV GCCGGC 1 cut(s) 694
NlaIII CATG 8 cut(s) 8, 105, 199, 256, 277, 302, 397, 436
NlaIV GGNNCC 4 cut(s) 23, 455, 576, 693
NmuCI GTSAC 4 cut(s) 301, 314, 352, 365
NsbI TGCGCA 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 6 cut(s) 8, 105, 256, 277, 302, 436
PaeI GCATGC 3 cut(s) 8, 105, 436
PagI TCATGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 654
PciI ACATGT 2 cut(s) 252, 273
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 185, 228
PdiI GCCGGC 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 5 cut(s) 116, 230, 528, 637, 642
PluTI GGCGCC 1 cut(s) 578
PpuMI RGGWCCY 1 cut(s) 21
PscI ACATGT 2 cut(s) 252, 273
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 3 cut(s) 387, 456, 469
PspEI GGTNACC 2 cut(s) 352, 365
PspGI CCWGG 3 cut(s) 387, 456, 469
PspN4I GGNNCC 4 cut(s) 23, 455, 576, 693
PspPI GGNCC 2 cut(s) 21, 518
PspPPI RGGWCCY 1 cut(s) 21
PsuI RGATCY 1 cut(s) 453
PvuII CAGCTG 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 554
SalI GTCGAC 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 5 cut(s) 115, 229, 527, 636, 641
Sau3AI GATC 4 cut(s) 211, 234, 400, 453
Sau96I GGNCC 2 cut(s) 21, 518
ScrFI CCNGG 4 cut(s) 372, 389, 458, 471
SduI GDGCHC 2 cut(s) 419, 613
SetI ASST 8 cut(s) 23, 98, 116, 354, 359, 381, 645, 651
SfaNI GCATC 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 576
SgrAI CRCCGGYG 1 cut(s) 529
SinI GGWCC 2 cut(s) 21, 518
SmiMI CAYNNNNRTG 1 cut(s) 554
SphI GCATGC 3 cut(s) 8, 105, 436
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 3 cut(s) 229, 527, 599
SspDI GGCGCC 1 cut(s) 574
SspMI CTAG 2 cut(s) 429, 650
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 370, 387, 456, 469
StyI CCWWGG 4 cut(s) 195, 348, 521, 649
TaaI ACNGT 3 cut(s) 268, 545, 670
TaqI TCGA 2 cut(s) 249, 591
TauI GCSGC 2 cut(s) 231, 529
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 4 cut(s) 301, 314, 352, 365
TseI GCWGC 3 cut(s) 114, 635, 640
Tsp45I GTSAC 4 cut(s) 301, 314, 352, 365
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 21, 518
XagI CCTNNNNNAGG 1 cut(s) 489
XceI RCATGY 6 cut(s) 8, 105, 256, 277, 302, 436
XmaJI CCTAGG 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 429, 650
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.