RLG00000005425

Protein MOTHER of FT and TF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017153
Physical Location & Seq
Reverse (-)
67568107 .. 67570047
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005425

Sequence Viewer

Length: 783 bp
ATGCAGCTGGTTTGTCGCGACTTGTTTTCAAGCTTATCTTGCGGTTGCATGAAGGCCTGGGACTATTTACTGTTGGCTGATACATGTGTAAGGTGCTTGGCTGTAATCGACGGTCCTGATCGCGCCATTTGGATGAAGGAAGCCAAGGGATGGTGGTTTTACCACTTAGATGGAGGTCCACGTAACTTGTTTAAGGTTTGCATGCTTGATCAGCTGCTTCTTGCTCTTCATTTTCTTCACTCTGTTTTCGTTTTCTCCGACACCATGGCCGCCTCCGTTGATCCTTTGGTCGTCGGCCGCGTGATCGGCGATGTGGTCGACATGTTTGTCCCGACTGTGAACATGTCTGTTTACTTTGGTTCAAAGCACGTCACCAATGGCTGTGACATCAAACCCTCCATCGCCGCTAGCCCTCCGAAAGTGACCTTCTCCGGTCACCCTGGCGAGCTTTACACCCTGGTCATGACTGATCCCGATGCTCCGAGTCCAAGTGAGCCTAGCATGCGAGAATGGGTTCATTGGATCATGGCTGATATCCCTGGAGGAACAAATCCTATTAGAGGAAAAGAGATACTGCCCTACGTCGGACCAAGGCCACCGGTGGGAATTCACCGTTACATTTTGGTGCTGTTTCAGCAGAAGGTGCCTATGGGACTCGTGGATCAACCCCCGACTCGAGCCCATTTCAACACTCGCTATTTCGCAGCGCAGCTTGACCTAGGCCTGCCCGTGTCCACCGTGTATTTTAATTCACAGAAGGAGCCGGCCAACCGGAGGCGTTGA

Protein Analysis

261

Amino Acids

29.07

Weight (kDa)

7.64

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 137 - 237 9.5e-18 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18100
fragaria_vesca FvH4_5g17130
malus_domestica MD06G1229900.v1.1
prunus_persica Prupe.5G230900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178661
rosa_laevigata RLG00000005425
rosa_roxburghii Rroxscaffold_3G00274730
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana Rw7G001430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 643
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 1 cut(s) 318
AccII CGCG 3 cut(s) 18, 123, 300
AciI CCGC 4 cut(s) 42, 270, 298, 405
AclWI GGATC 4 cut(s) 275, 464, 530, 669
AcoI YGGCCR 3 cut(s) 267, 295, 765
AcsI RAATTY 1 cut(s) 606
AfiI CCNNNNNNNGG 5 cut(s) 150, 560, 584, 602, 774
AflIII ACRYGT 3 cut(s) 83, 321, 342
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 30, 363, 688
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 4 cut(s) 56, 439, 456, 538
AluBI AGCT 5 cut(s) 7, 33, 214, 448, 712
AluI AGCT 5 cut(s) 7, 33, 214, 448, 712
AlwI GGATC 4 cut(s) 275, 464, 530, 669
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 6 cut(s) 54, 267, 295, 593, 721, 765
ApeKI GCWGC 4 cut(s) 4, 214, 704, 709
ApoI RAATTY 1 cut(s) 606
AsiGI ACCGGT 1 cut(s) 598
Asp700I GAANNNNTTC 1 cut(s) 513
AspA2I CCTAGG 1 cut(s) 718
AspLEI GCGC 2 cut(s) 125, 709
AspS9I GGNCC 3 cut(s) 113, 176, 587
AsuHPI GGTGA 3 cut(s) 364, 428, 602
AsuNHI GCTAGC 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 3 cut(s) 113, 176, 587
AvrII CCTAGG 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanI GGYRCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 682
BauI CACGAG 1 cut(s) 656
BbvI GCAGC 4 cut(s) 16, 201, 716, 721
BccI CCATC 3 cut(s) 144, 164, 407
BciT130I CCWGG 4 cut(s) 58, 441, 458, 540
BclI TGATCA 1 cut(s) 208
BfaI CTAG 3 cut(s) 408, 498, 719
BisI GCNGC 7 cut(s) 5, 215, 270, 298, 405, 705, 710
BlnI CCTAGG 1 cut(s) 718
BlsI GCNGC 7 cut(s) 6, 216, 271, 299, 406, 706, 711
Bme1390I CCNGG 4 cut(s) 58, 441, 458, 540
Bme18I GGWCC 3 cut(s) 113, 176, 587
BmeT110I CYCGRG 1 cut(s) 675
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 113, 176, 587
BmiI GGNNCC 2 cut(s) 645, 762
BmrFI CCNGG 4 cut(s) 58, 441, 458, 540
BmsI GCATC 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 182
BsaJI CCNNGG 8 cut(s) 57, 144, 264, 439, 456, 538, 590, 718
BsaWI WCCGGW 3 cut(s) 431, 598, 771
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 560, 584, 602, 774
Bse118I RCCGGY 2 cut(s) 598, 763
BseBI CCWGG 4 cut(s) 58, 441, 458, 540
BseDI CCNNGG 8 cut(s) 57, 144, 264, 439, 456, 538, 590, 718
BseGI GGATG 2 cut(s) 138, 155
BseLI CCNNNNNNNGG 5 cut(s) 150, 560, 584, 602, 774
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 16, 201, 716, 721
Bsh1236I CGCG 3 cut(s) 18, 123, 300
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 6 cut(s) 56, 269, 297, 595, 723, 767
BshNI GGYRCC 1 cut(s) 643
BshTI ACCGGT 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 4 cut(s) 432, 599, 764, 772
BslFI GGGAC 3 cut(s) 74, 314, 666
BslI CCNNNNNNNGG 5 cut(s) 150, 560, 584, 602, 774
BsmFI GGGAC 3 cut(s) 74, 314, 666
BsnI GGCC 6 cut(s) 56, 269, 297, 595, 723, 767
BsoBI CYCGRG 1 cut(s) 675
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
Bsp19I CCATGG 1 cut(s) 264
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 4 cut(s) 42, 270, 298, 405
BspANI GGCC 6 cut(s) 56, 269, 297, 595, 723, 767
BspFNI CGCG 3 cut(s) 18, 123, 300
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 645, 762
BspOI GCTAGC 1 cut(s) 411
BspPI GGATC 4 cut(s) 275, 464, 530, 669
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 598, 763
BssAI RCCGGY 2 cut(s) 598, 763
BssECI CCNNGG 8 cut(s) 57, 144, 264, 439, 456, 538, 590, 718
BssMI GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 4 cut(s) 144, 264, 590, 718
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 4 cut(s) 58, 441, 458, 540
Bst4CI ACNGT 5 cut(s) 72, 113, 337, 614, 739
Bst6I CTCTTC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 6 cut(s) 203, 409, 446, 503, 725, 765
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 264
BstEII GGTNACC 1 cut(s) 434
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 138, 155
BstFNI CGCG 3 cut(s) 18, 123, 300
BstHHI GCGC 2 cut(s) 125, 709
BstKTI GATC 7 cut(s) 121, 211, 283, 306, 472, 525, 664
BstMBI GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 6 cut(s) 39, 211, 306, 502, 634, 643
BstNI CCWGG 4 cut(s) 58, 441, 458, 540
BstNSI RCATGY 5 cut(s) 87, 205, 325, 346, 505
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 4 cut(s) 56, 439, 456, 538
BstUI CGCG 3 cut(s) 18, 123, 300
BstV1I GCAGC 4 cut(s) 16, 201, 716, 721
BstXI CCANNNNNNTGG 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 6 cut(s) 56, 269, 297, 595, 723, 767
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 2 cut(s) 324, 385
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 138, 155
BtuMI TCGCGA 1 cut(s) 18
Cac8I GCNNGC 6 cut(s) 203, 409, 446, 503, 725, 765
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 125, 709
Cfr10I RCCGGY 2 cut(s) 598, 763
Cfr13I GGNCC 3 cut(s) 113, 176, 587
CspAI ACCGGT 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 9 cut(s) 49, 84, 202, 265, 322, 343, 463, 502, 526
DdeI CTNAG 1 cut(s) 166
DpnI GATC 7 cut(s) 120, 210, 282, 305, 471, 524, 663
DpnII GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 3 cut(s) 267, 295, 765
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 4 cut(s) 144, 264, 590, 718
Eco147I AGGCCT 2 cut(s) 56, 723
Eco24I GRGCYC 1 cut(s) 682
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 113, 176, 587
Eco52I CGGCCG 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 675
Eco91I GGTNACC 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoO65I GGTNACC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 4 cut(s) 56, 439, 456, 538
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 4 cut(s) 144, 264, 590, 718
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 4 cut(s) 144, 264, 590, 718
FaeI CATG 9 cut(s) 52, 87, 205, 268, 325, 346, 466, 505, 529
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 3 cut(s) 74, 314, 666
FatI CATG 9 cut(s) 48, 83, 201, 264, 321, 342, 462, 501, 525
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 5, 215, 270, 298, 405, 705, 710
FokI GGATG 2 cut(s) 145, 162
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 7 cut(s) 5, 215, 270, 298, 405, 705, 710
FspBI CTAG 3 cut(s) 408, 498, 719
GlaI GCGC 2 cut(s) 124, 708
GluI GCNGC 7 cut(s) 5, 215, 270, 298, 405, 705, 710
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 6 cut(s) 56, 269, 297, 595, 723, 767
HapII CCGG 4 cut(s) 432, 599, 764, 772
HhaI GCGC 2 cut(s) 125, 709
Hin1II CATG 9 cut(s) 52, 87, 205, 268, 325, 346, 466, 505, 529
Hin6I GCGC 2 cut(s) 123, 707
HinP1I GCGC 2 cut(s) 123, 707
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 3 cut(s) 484, 654, 673
HpaII CCGG 4 cut(s) 432, 599, 764, 772
HphI GGTGA 3 cut(s) 364, 428, 602
Hpy166II GTNNAC 5 cut(s) 179, 319, 340, 352, 735
Hpy188I TCNGA 4 cut(s) 259, 417, 483, 587
Hpy188III TCNNGA 5 cut(s) 17, 116, 331, 463, 473
Hpy8I GTNNAC 5 cut(s) 179, 319, 340, 352, 735
Hpy99I CGWCG 3 cut(s) 113, 296, 587
HpyAV CCTTC 5 cut(s) 46, 130, 436, 634, 751
HpyCH4III ACNGT 5 cut(s) 72, 113, 337, 614, 739
HpyCH4IV ACGT 3 cut(s) 181, 369, 582
HpyCH4V TGCA 3 cut(s) 4, 48, 201
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 211, 306, 502, 634, 643
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 3 cut(s) 181, 369, 582
Hsp92II CATG 9 cut(s) 52, 87, 205, 268, 325, 346, 466, 505, 529
HspAI GCGC 2 cut(s) 123, 707
KroI GCCGGC 1 cut(s) 763
KroNI GCCGGC 1 cut(s) 765
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 484, 760
Lsp1109I GCAGC 4 cut(s) 16, 201, 716, 721
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 408, 498, 719
MaeII ACGT 3 cut(s) 181, 369, 582
MaeIII GTNAC 6 cut(s) 182, 370, 383, 421, 434, 614
MalI GATC 7 cut(s) 120, 210, 282, 305, 471, 524, 663
MboI GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
MboII GAAGA 2 cut(s) 218, 227
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 2 cut(s) 606, 748
MlyI GAGTC 3 cut(s) 493, 648, 667
MmeI TCCRAC 2 cut(s) 282, 565
MnlI CCTC 7 cut(s) 167, 283, 406, 423, 536, 554, 768
MroNI GCCGGC 1 cut(s) 763
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 192, 747
MslI CAYNNNNRTG 3 cut(s) 131, 168, 623
MspA1I CMGCKG 2 cut(s) 7, 214
MspI CCGG 4 cut(s) 432, 599, 764, 772
MspR9I CCNGG 4 cut(s) 58, 441, 458, 540
MvaI CCWGG 4 cut(s) 58, 441, 458, 540
MvnI CGCG 3 cut(s) 18, 123, 300
MwoI GCNNNNNNNGC 6 cut(s) 39, 211, 306, 502, 634, 643
NaeI GCCGGC 1 cut(s) 765
NcoI CCATGG 1 cut(s) 264
NdeII GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
NgoMIV GCCGGC 1 cut(s) 763
NheI GCTAGC 1 cut(s) 407
NlaIII CATG 9 cut(s) 52, 87, 205, 268, 325, 346, 466, 505, 529
NlaIV GGNNCC 2 cut(s) 645, 762
NmuCI GTSAC 4 cut(s) 370, 383, 421, 434
NruI TCGCGA 1 cut(s) 18
NspI RCATGY 5 cut(s) 87, 205, 325, 346, 505
PaeI GCATGC 2 cut(s) 205, 505
PaeR7I CTCGAG 1 cut(s) 675
PagI TCATGA 1 cut(s) 462
PceI AGGCCT 2 cut(s) 56, 723
PciI ACATGT 3 cut(s) 83, 321, 342
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 297
PdiI GCCGGC 1 cut(s) 765
PdmI GAANNNNTTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 150
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 7 cut(s) 6, 216, 271, 299, 406, 706, 711
PleI GAGTC 3 cut(s) 492, 648, 667
PpsI GAGTC 3 cut(s) 492, 648, 667
Ppu21I YACGTR 1 cut(s) 182
PscI ACATGT 3 cut(s) 83, 321, 342
Psp6I CCWGG 4 cut(s) 56, 439, 456, 538
PspEI GGTNACC 1 cut(s) 434
PspGI CCWGG 4 cut(s) 56, 439, 456, 538
PspN4I GGNNCC 2 cut(s) 645, 762
PspPI GGNCC 3 cut(s) 113, 176, 587
PspXI VCTCGAGB 1 cut(s) 675
PvuII CAGCTG 2 cut(s) 7, 214
RruI TCGCGA 1 cut(s) 18
RseI CAYNNNNRTG 3 cut(s) 131, 168, 623
SalI GTCGAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 192, 747
SatI GCNGC 7 cut(s) 5, 215, 270, 298, 405, 705, 710
Sau3AI GATC 7 cut(s) 118, 208, 280, 303, 469, 522, 661
Sau96I GGNCC 3 cut(s) 113, 176, 587
SchI GAGTC 3 cut(s) 493, 648, 667
ScrFI CCNGG 4 cut(s) 58, 441, 458, 540
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 675
SgrAI CRCCGGYG 1 cut(s) 598
SinI GGWCC 3 cut(s) 113, 176, 587
SlaI CTCGAG 1 cut(s) 675
SmiMI CAYNNNNRTG 3 cut(s) 131, 168, 623
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
SphI GCATGC 2 cut(s) 205, 505
Sse9I AATT 2 cut(s) 606, 748
SseBI AGGCCT 2 cut(s) 56, 723
SsiI CCGC 4 cut(s) 42, 270, 298, 405
SspMI CTAG 3 cut(s) 408, 498, 719
StuI AGGCCT 2 cut(s) 56, 723
StyD4I CCNGG 4 cut(s) 56, 439, 456, 538
StyI CCWWGG 4 cut(s) 144, 264, 590, 718
TaaI ACNGT 5 cut(s) 72, 113, 337, 614, 739
TaiI ACGT 3 cut(s) 184, 372, 585
TaqI TCGA 3 cut(s) 108, 318, 676
TasI AATT 2 cut(s) 606, 748
TauI GCSGC 3 cut(s) 272, 300, 407
Tru1I TTAA 2 cut(s) 192, 747
Tru9I TTAA 2 cut(s) 192, 747
TseFI GTSAC 4 cut(s) 370, 383, 421, 434
TseI GCWGC 4 cut(s) 4, 214, 704, 709
Tsp45I GTSAC 4 cut(s) 370, 383, 421, 434
TspDTI ATGAA 4 cut(s) 65, 149, 218, 506
TspGWI ACGGA 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 3 cut(s) 113, 176, 587
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 1 cut(s) 606
XceI RCATGY 5 cut(s) 87, 205, 325, 346, 505
XhoI CTCGAG 1 cut(s) 675
XmaJI CCTAGG 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 3 cut(s) 408, 498, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.