Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017153

Physical Location & Seq

Genomic Coordinates Reverse (-)

66366107 .. 66367474

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCGCCTCCGTTGATCCTTTGGTCGTCGGCCGCGTGATCGGTGATGTGGTCGACATGTTTGTCCCGACTGTGAACATGTCTGTTTACTTTGGTTCAAAGCACGTCACCAATGGCTGTGACATCAAACCCTCCATCGCCGTTAGCCCTCCGAAAGTGACCTTCTCCGGAAAAGAGATACTGCCCTACGTCGGACCAAGGCCACCGGTGGGAATTCACCGTTACATTTTGGTGCTGTTTCAGCAGAAGGTGCCTATGGGACTCGTGGATCAACCCCCGACTCGAGCCCATTTCAACACTCGCTATTTCGCAGCGCAGCTTGACCTAGGCCTGCCCGTGTCCACCGTGTATTTTAATTCACAGAAGGAGCCGGCCAACCGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010030 GO:0010033 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

9.77

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	61 - 107	4.9e-06	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18100
fragaria_vesca	FvH4_5g17130
malus_domestica	MD06G1229900.v1.1
prunus_persica	Prupe.5G230900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0178661
rosa_laevigata	RLG00000005425
rosa_roxburghii	Rroxscaffold_3G00274730
rosa_rugosa	Rorug06G0418700
rosa_samantha	Rh7AG017600 Rh7BG017200 Rh7CG017800 Rh7DG017900
rosa_wichuraiana	Rw7G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	2 cut(s)	6, 34
AclWI	GGATC	2 cut(s)	11, 276
AcoI	YGGCCR	3 cut(s)	3, 31, 372
AcsI	RAATTY	1 cut(s)	213
AfiI	CCNNNNNNNGG	3 cut(s)	191, 209, 381
AflIII	ACRYGT	2 cut(s)	57, 78
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	99, 295
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
AlwI	GGATC	2 cut(s)	11, 276
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	5 cut(s)	3, 31, 200, 328, 372
ApeKI	GCWGC	2 cut(s)	311, 316
ApoI	RAATTY	1 cut(s)	213
AsiGI	ACCGGT	1 cut(s)	205
AspA2I	CCTAGG	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	56, 100, 209
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	323, 328
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	4 cut(s)	6, 34, 312, 317
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	4 cut(s)	7, 35, 313, 318
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	252, 369
BsaJI	CCNNGG	2 cut(s)	197, 325
BsaWI	WCCGGW	3 cut(s)	167, 205, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 209, 381
Bse118I	RCCGGY	2 cut(s)	205, 370
BseAI	TCCGGA	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	197, 325
BseLI	CCNNNNNNNGG	3 cut(s)	191, 209, 381
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	323, 328
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	5, 33, 202, 330, 374
BshNI	GGYRCC	1 cut(s)	250
BshTI	ACCGGT	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	4 cut(s)	168, 206, 371, 379
BslFI	GGGAC	2 cut(s)	50, 273
BslI	CCNNNNNNNGG	3 cut(s)	191, 209, 381
BsmFI	GGGAC	2 cut(s)	50, 273
BsnI	GGCC	5 cut(s)	5, 33, 202, 330, 374
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	16, 39, 268
BspACI	CCGC	2 cut(s)	6, 34
BspANI	GGCC	5 cut(s)	5, 33, 202, 330, 374
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	252, 369
BspPI	GGATC	2 cut(s)	11, 276
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	2 cut(s)	205, 370
BssAI	RCCGGY	2 cut(s)	205, 370
BssECI	CCNNGG	2 cut(s)	197, 325
BssMI	GATC	3 cut(s)	16, 39, 268
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	197, 325
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	3 cut(s)	73, 221, 346
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	332, 372
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	3 cut(s)	19, 42, 271
BstMBI	GATC	3 cut(s)	16, 39, 268
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 250
BstNSI	RCATGY	2 cut(s)	61, 82
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	323, 328
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	5 cut(s)	5, 33, 202, 330, 374
BtgZI	GCGATG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	332, 372
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	205, 370
Cfr13I	GGNCC	1 cut(s)	194
CspAI	ACCGGT	1 cut(s)	205
CviAII	CATG	2 cut(s)	58, 79
DpnI	GATC	3 cut(s)	18, 41, 270
DpnII	GATC	3 cut(s)	16, 39, 268
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	3 cut(s)	3, 31, 372
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	197, 325
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	197, 325
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	197, 325
FaeI	CATG	2 cut(s)	61, 82
FaiI	YATR	3 cut(s)	59, 80, 257
FaqI	GGGAC	2 cut(s)	50, 273
FatI	CATG	2 cut(s)	57, 78
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	6, 34, 312, 317
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	6, 34, 312, 317
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	6, 34, 312, 317
HaeIII	GGCC	5 cut(s)	5, 33, 202, 330, 374
HapII	CCGG	4 cut(s)	168, 206, 371, 379
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	61, 82
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	261, 280
HpaII	CCGG	4 cut(s)	168, 206, 371, 379
HphI	GGTGA	3 cut(s)	56, 100, 209
Hpy166II	GTNNAC	4 cut(s)	55, 76, 88, 342
Hpy188I	TCNGA	2 cut(s)	153, 194
Hpy188III	TCNNGA	2 cut(s)	67, 168
Hpy8I	GTNNAC	4 cut(s)	55, 76, 88, 342
Hpy99I	CGWCG	2 cut(s)	32, 194
HpyAV	CCTTC	3 cut(s)	172, 241, 358
HpyCH4III	ACNGT	3 cut(s)	73, 221, 346
HpyCH4IV	ACGT	2 cut(s)	105, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 250
HpySE526I	ACGT	2 cut(s)	105, 189
Hsp92II	CATG	2 cut(s)	61, 82
HspAI	GCGC	1 cut(s)	314
Kpn2I	TCCGGA	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	16, 39, 268
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	4 cut(s)	181, 219, 344, 384
Lsp1109I	GCAGC	2 cut(s)	323, 328
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	105, 189
MaeIII	GTNAC	4 cut(s)	106, 119, 157, 221
MalI	GATC	3 cut(s)	18, 41, 270
MboI	GATC	3 cut(s)	16, 39, 268
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	213, 355
MlyI	GAGTC	2 cut(s)	255, 274
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	19, 142, 159, 375
MroI	TCCGGA	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	4 cut(s)	168, 206, 371, 379
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	241, 250
NaeI	GCCGGC	1 cut(s)	372
NdeII	GATC	3 cut(s)	16, 39, 268
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	61, 82
NlaIV	GGNNCC	2 cut(s)	252, 369
NmuCI	GTSAC	3 cut(s)	106, 119, 157
NspI	RCATGY	2 cut(s)	61, 82
PaeR7I	CTCGAG	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	330
PciI	ACATGT	2 cut(s)	57, 78
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	372
PinAI	ACCGGT	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	7, 35, 313, 318
PleI	GAGTC	2 cut(s)	255, 274
PpsI	GAGTC	2 cut(s)	255, 274
PscI	ACATGT	2 cut(s)	57, 78
PspN4I	GGNNCC	2 cut(s)	252, 369
PspPI	GGNCC	1 cut(s)	194
PspXI	VCTCGAGB	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	6, 34, 312, 317
Sau3AI	GATC	3 cut(s)	16, 39, 268
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	255, 274
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	108, 164, 192, 252, 321, 327
Sfr274I	CTCGAG	1 cut(s)	282
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	213, 355
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	6, 34
SspMI	CTAG	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	197, 325
TaaI	ACNGT	3 cut(s)	73, 221, 346
TaiI	ACGT	2 cut(s)	108, 192
TaqI	TCGA	2 cut(s)	54, 283
TasI	AATT	2 cut(s)	213, 355
TauI	GCSGC	2 cut(s)	8, 36
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	3 cut(s)	106, 119, 157
TseI	GCWGC	2 cut(s)	311, 316
Tsp45I	GTSAC	3 cut(s)	106, 119, 157
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	2 cut(s)	61, 82
XhoI	CTCGAG	1 cut(s)	282
XmaJI	CCTAGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.