Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Forward (+)

6584241 .. 6586517

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGAAGTACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAAACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCTAAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATCTGAGGCAAGCTGTTACCATAAACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATACGTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACTGGTCACAGATAGAACACTGGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGAGGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTTAACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAAGTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGATTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

185

Amino Acids

21.17

Weight (kDa)

8.29

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF3_N	PF22466	5 - 55	2.1e-08	PSF3 N-terminal domain
Sld5	PF05916	70 - 164	9.6e-11	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	265
AclWI	GGATC	2 cut(s)	86, 338
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	3 cut(s)	11, 51, 416
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	137, 227, 484, 525
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	5 cut(s)	179, 395, 407, 461, 521
AluI	AGCT	5 cut(s)	179, 395, 407, 461, 521
AlwI	GGATC	2 cut(s)	86, 338
ApeKI	GCWGC	3 cut(s)	242, 392, 458
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbvI	GCAGC	3 cut(s)	229, 404, 470
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	243, 393, 459
BlsI	GCNGC	3 cut(s)	244, 394, 460
BmcAI	AGTACT	2 cut(s)	11, 416
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	3 cut(s)	175, 229, 281
BmuI	ACTGGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	312, 330
BseGI	GGATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	312, 330
BseXI	GCAGC	3 cut(s)	229, 404, 470
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	91, 253, 260, 330, 354
Bsp68I	TCGCGA	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	157
BspPI	GGATC	2 cut(s)	86, 338
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	312, 330
BssAI	RCCGGY	1 cut(s)	52
BssMI	GATC	5 cut(s)	91, 253, 260, 330, 354
BssNAI	GTATAC	1 cut(s)	385
Bst1107I	GTATAC	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	153, 177
BstDEI	CTNAG	2 cut(s)	170, 257
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	5 cut(s)	94, 256, 263, 333, 357
BstMBI	GATC	5 cut(s)	91, 253, 260, 330, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 242
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	229, 404, 470
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BstZ17I	GTATAC	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	305, 323, 371
BtuMI	TCGCGA	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	153, 177
CciI	TCATGA	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	10, 50, 415
CspAI	ACCGGT	1 cut(s)	52
CviAII	CATG	1 cut(s)	158
CviQI	GTAC	3 cut(s)	10, 50, 415
DdeI	CTNAG	2 cut(s)	170, 257
DpnI	GATC	5 cut(s)	93, 255, 262, 332, 356
DpnII	GATC	5 cut(s)	91, 253, 260, 330, 354
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	503
FaeI	CATG	1 cut(s)	161
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	243, 393, 459
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	243, 393, 459
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	243, 393, 459
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	510, 548
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	171, 359, 533
Hpy188III	TCNNGA	4 cut(s)	158, 264, 484, 514
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	154, 203, 490
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	101, 166, 245, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 242
HpyF3I	CTNAG	2 cut(s)	170, 257
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	91, 253, 260, 330, 354
LpnPI	CCDG	8 cut(s)	66, 133, 214, 218, 293, 311, 483, 527
Lsp1109I	GCAGC	3 cut(s)	229, 404, 470
LweI	GCATC	3 cut(s)	175, 229, 281
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	82, 181, 310
MalI	GATC	5 cut(s)	93, 255, 262, 332, 356
MboI	GATC	5 cut(s)	91, 253, 260, 330, 354
MboII	GAAGA	3 cut(s)	53, 449, 546
MflI	RGATCY	1 cut(s)	330
MluCI	AATT	3 cut(s)	109, 284, 553
MnlI	CCTC	5 cut(s)	31, 165, 207, 213, 361
MseI	TTAA	3 cut(s)	351, 428, 556
MspI	CCGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	172, 242
NdeII	GATC	5 cut(s)	91, 253, 260, 330, 354
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	82, 310
NruI	TCGCGA	1 cut(s)	265
PagI	TCATGA	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	510, 548
PinAI	ACCGGT	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	244, 394, 460
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	330
RruI	TCGCGA	1 cut(s)	265
RsaI	GTAC	3 cut(s)	11, 51, 416
RsaNI	GTAC	3 cut(s)	10, 50, 415
SaqAI	TTAA	3 cut(s)	351, 428, 556
SatI	GCNGC	3 cut(s)	243, 393, 459
Sau3AI	GATC	5 cut(s)	91, 253, 260, 330, 354
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	2 cut(s)	11, 416
SetI	ASST	8 cut(s)	181, 195, 252, 397, 409, 463, 502, 523
SfaNI	GCATC	3 cut(s)	175, 229, 281
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	3 cut(s)	109, 284, 553
SspMI	CTAG	1 cut(s)	507
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	252, 341, 470
TasI	AATT	3 cut(s)	109, 284, 553
TatI	WGTACW	2 cut(s)	9, 414
TfiI	GAWTC	2 cut(s)	510, 548
Tru1I	TTAA	3 cut(s)	351, 428, 556
Tru9I	TTAA	3 cut(s)	351, 428, 556
TscAI	CASTG	3 cut(s)	312, 330, 378
TseFI	GTSAC	2 cut(s)	82, 310
TseI	GCWGC	3 cut(s)	242, 392, 458
Tsp45I	GTSAC	2 cut(s)	82, 310
TspDTI	ATGAA	2 cut(s)	297, 468
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	3 cut(s)	312, 330, 378
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	507
ZrmI	AGTACT	2 cut(s)	11, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.