Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Forward (+)

26113560 .. 26116211

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTAACTACTATGACATTGATGATATTATTATGGAGCAACAGCTCGTCCCGGTTGTTTTCCATAAAGCAGTAAATGGTGTGGAGATTGATCCTAGTGCTGAAACTGATTATGTTGAAGCCGGTTCAAAGGTAGAGCTGCCTTTATGGCTTGCTTATGAGTTACACCTCAAACAAGTAGTAAAGATGAAGGTTCCTGCCTGTTTCAATCACAGAACAAAGCTGGAACTTGGGGCTGATGGTGCAGCAGTAGATTTGAGATCTCGATGTCTATACTTCTATGAATTTGGATGCAAGATAGCACCATTGATTGGTGACAGAGACATGGGATCTTTCCTATTATCTGCATTCAGAACCAGGTACCAGCAAATACTGGCAAAGGCACATAATGCAGCATTTACGGCACCTTCGAAATTGTTGAGTTTCTTAACAAAAGAAGAAACCAACTTGTATGAGGCGGCTCAATCCTCAATGGCAGCCTTCAAGAAGTGGCGGATCGGCGGCCCCCGATTCGAAAGAGCTTCTGTTCTTGGGAGGAAGAGGAAATCAACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

8.69

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF3_N	PF22466	5 - 55	1.1e-10	PSF3 N-terminal domain
Sld5	PF05916	72 - 164	7.3e-12	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	2 cut(s)	360, 403
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	3 cut(s)	458, 493, 501
AclWI	GGATC	3 cut(s)	86, 337, 503
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	119, 129, 208, 484
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	4 cut(s)	46, 139, 223, 521
AluI	AGCT	4 cut(s)	46, 139, 223, 521
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	86, 337, 503
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	4 cut(s)	139, 245, 392, 476
ApoI	RAATTY	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	2 cut(s)	410, 513
BanI	GGYRCC	2 cut(s)	360, 403
BbvI	GCAGC	4 cut(s)	126, 257, 404, 488
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	96, 556
BglI	GCCNNNNNGGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	6 cut(s)	140, 246, 393, 459, 477, 502
BlsI	GCNGC	6 cut(s)	141, 247, 394, 460, 478, 503
Bme1390I	CCNGG	2 cut(s)	53, 358
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	4 cut(s)	195, 362, 405, 505
BmrFI	CCNGG	2 cut(s)	53, 358
BmsI	GCATC	1 cut(s)	281
Bpu14I	TTCGAA	2 cut(s)	410, 513
BpuMI	CCSGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	4 cut(s)	126, 257, 404, 488
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	504
BshNI	GGYRCC	2 cut(s)	360, 403
BsiSI	CCGG	2 cut(s)	53, 123
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	504
Bsp119I	TTCGAA	2 cut(s)	410, 513
Bsp143I	GATC	4 cut(s)	91, 260, 329, 495
BspACI	CCGC	3 cut(s)	458, 493, 501
BspANI	GGCC	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	195, 362, 405, 505
BspPI	GGATC	3 cut(s)	86, 337, 503
BspT104I	TTCGAA	2 cut(s)	410, 513
BspT107I	GGYRCC	2 cut(s)	360, 403
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	4 cut(s)	91, 260, 329, 495
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBI	TTCGAA	2 cut(s)	410, 513
BstC8I	GCNNGC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	4 cut(s)	94, 263, 332, 498
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	91, 260, 329, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 242, 389, 401
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	51, 356
BstV1I	GCAGC	4 cut(s)	126, 257, 404, 488
BstX2I	RGATCY	2 cut(s)	260, 329
BstYI	RGATCY	2 cut(s)	260, 329
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	4 cut(s)	93, 262, 331, 497
DpnII	GATC	4 cut(s)	91, 260, 329, 495
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	328
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	140, 246, 393, 459, 477, 502
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	140, 246, 393, 459, 477, 502
FspBI	CTAG	2 cut(s)	96, 556
GluI	GCNGC	6 cut(s)	140, 246, 393, 459, 477, 502
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	2 cut(s)	53, 123
Hin1II	CATG	1 cut(s)	328
HinfI	GANTC	1 cut(s)	510
HpaII	CCGG	2 cut(s)	53, 123
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	2 cut(s)	264, 484
HpyAV	CCTTC	3 cut(s)	184, 417, 490
HpyCH4V	TGCA	4 cut(s)	245, 294, 347, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 242, 389, 401
Hsp92II	CATG	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	91, 260, 329, 495
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	66, 136, 209, 210, 214, 343, 359, 370, 377
Lsp1109I	GCAGC	4 cut(s)	126, 257, 404, 488
LweI	GCATC	1 cut(s)	281
MabI	ACCWGGT	1 cut(s)	356
MaeI	CTAG	2 cut(s)	96, 556
MaeIII	GTNAC	2 cut(s)	162, 314
MalI	GATC	4 cut(s)	93, 262, 331, 497
MboI	GATC	4 cut(s)	91, 260, 329, 495
MboII	GAAGA	2 cut(s)	449, 550
MflI	RGATCY	2 cut(s)	260, 329
MluCI	AATT	2 cut(s)	284, 413
MnlI	CCTC	5 cut(s)	179, 448, 478, 528, 534
MseI	TTAA	1 cut(s)	428
MspI	CCGG	2 cut(s)	53, 123
MspR9I	CCNGG	2 cut(s)	53, 358
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	4 cut(s)	148, 242, 389, 401
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	91, 260, 329, 495
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	4 cut(s)	195, 362, 405, 505
NmuCI	GTSAC	1 cut(s)	314
NspV	TTCGAA	2 cut(s)	410, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	510
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	6 cut(s)	141, 247, 394, 460, 478, 503
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	195, 362, 405, 505
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	260, 329
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	6 cut(s)	140, 246, 393, 459, 477, 502
Sau3AI	GATC	4 cut(s)	91, 260, 329, 495
Sau96I	GGNCC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	53, 358
SetI	ASST	9 cut(s)	48, 135, 141, 171, 195, 225, 362, 409, 523
SexAI	ACCWGGT	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	281
SfuI	TTCGAA	2 cut(s)	410, 513
Sse9I	AATT	2 cut(s)	284, 413
SsiI	CCGC	3 cut(s)	458, 493, 501
SspMI	CTAG	2 cut(s)	96, 556
StyD4I	CCNGG	2 cut(s)	51, 356
TaqI	TCGA	3 cut(s)	265, 410, 513
TasI	AATT	2 cut(s)	284, 413
TauI	GCSGC	2 cut(s)	461, 504
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	4 cut(s)	139, 245, 392, 476
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	203, 297
Van91I	CCANNNNNTGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	2 cut(s)	96, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.