Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Forward (+)

26497987 .. 26500535

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTATGTTTTACTAATTGGGTATTTGTGGGTTTTATCTCTTTTTCTGAGTAGTCTTTACCCTATACTCGGCCAGAGAAAGAAAGAAAATAATTATATATGCTTCTTCTATGAAATCAATAAGGAGTCTGTCCTGGAGAAGGCAGGGAGCATTGTACGGCGAGTGGGATCTTTTCTGAAAATGGCAAGTTACTATGACATTGATGATATTCTTGTGGAGGAACAGCGTGTCCCAGTTGTTTTCCAGCAAGCAGTAAATGGGGTTGATATTGATCCTAGTGCTGAAACCCATTGTGTTGAACCTGGTTCGAAGGTAGAGCTGCCTTACTGGCTTGCTCATGAGTTACACCTCAGAAAAGTAGCAAAGATGAAGGTTCCTGCATGTTTCAATCAAAGAACAAAACTGGAACTTGGGGCTGATGGTGCATCTGTGGATTTAAGATCTCGATGTCTATACTTCTATGAATTTGGATGCAAGATAGCACCGCTGGTTGGTGATAGGGACATGGGATCATTCCTATTATCTGCATTTAGGACCAGGTATCAGAAAATCGTGGCAAAGGCACATAACGCAGCATTTACAGCACATTCAAAATTGCTGTCGTACTTAACAAAAGAAGAAACTAATCTGTATGAGGCAGCTCAGTCGTCAATGGCGGCCTTTAAGAAGTGGCGGATAGGCGGCCCCCGATTCGAGAGAGCTTCTGTACTTGGGAGGAAGAGGAAGGAAGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

9.25

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	485, 656, 673, 681
AclWI	GGATC	3 cut(s)	175, 266, 517
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	3 cut(s)	156, 605, 708
AfiI	CCNNNNNNNGG	3 cut(s)	68, 139, 491
AgsI	TTSAA	3 cut(s)	299, 388, 591
AjnI	CCWGG	3 cut(s)	132, 301, 536
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	3 cut(s)	319, 641, 701
AluI	AGCT	3 cut(s)	319, 641, 701
AlwI	GGATC	3 cut(s)	175, 266, 517
AoxI	GGCC	3 cut(s)	70, 657, 682
ApeKI	GCWGC	3 cut(s)	319, 572, 638
ApoI	RAATTY	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AspS9I	GGNCC	2 cut(s)	534, 683
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	306, 584, 650
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	3 cut(s)	134, 303, 538
BfaI	CTAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	328
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	5 cut(s)	320, 573, 639, 657, 682
BlsI	GCNGC	5 cut(s)	321, 574, 640, 658, 683
Bme1390I	CCNGG	3 cut(s)	134, 303, 538
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	534, 683
BmiI	GGNNCC	2 cut(s)	375, 685
BmrFI	CCNGG	3 cut(s)	134, 303, 538
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	434, 461
BmuI	ACTGGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 139, 491
Bse1I	ACTGG	3 cut(s)	233, 332, 408
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	3 cut(s)	134, 303, 538
BseGI	GGATG	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	68, 139, 491
BseMII	CTCAG	3 cut(s)	38, 364, 656
BseNI	ACTGG	3 cut(s)	233, 332, 408
BseXI	GCAGC	3 cut(s)	306, 584, 650
BshFI	GGCC	3 cut(s)	72, 659, 684
BslFI	GGGAC	2 cut(s)	215, 515
BslI	CCNNNNNNNGG	3 cut(s)	68, 139, 491
BsmFI	GGGAC	2 cut(s)	215, 515
BsnI	GGCC	3 cut(s)	72, 659, 684
Bsp119I	TTCGAA	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	167, 271, 440, 509
BspACI	CCGC	4 cut(s)	485, 656, 673, 681
BspANI	GGCC	3 cut(s)	72, 659, 684
BspCNI	CTCAG	3 cut(s)	39, 363, 655
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	375, 685
BspPI	GGATC	3 cut(s)	175, 266, 517
BspT104I	TTCGAA	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	233, 332, 408
BssMI	GATC	4 cut(s)	167, 271, 440, 509
Bst2UI	CCWGG	3 cut(s)	134, 303, 538
Bst6I	CTCTTC	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	249, 333
BstDEI	CTNAG	3 cut(s)	47, 350, 642
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	4 cut(s)	170, 274, 443, 512
BstMBI	GATC	4 cut(s)	167, 271, 440, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 422, 569, 581
BstNI	CCWGG	3 cut(s)	134, 303, 538
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	132, 301, 536
BstV1I	GCAGC	3 cut(s)	306, 584, 650
BstX2I	RGATCY	2 cut(s)	167, 440
BstYI	RGATCY	2 cut(s)	167, 440
BsuRI	GGCC	3 cut(s)	72, 659, 684
BtsCI	GGATG	1 cut(s)	476
Cac8I	GCNNGC	2 cut(s)	249, 333
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	534, 683
CsiI	ACCWGGT	2 cut(s)	301, 536
Csp6I	GTAC	3 cut(s)	155, 604, 707
CviAII	CATG	3 cut(s)	338, 381, 505
CviJI	RGCY	9 cut(s)	72, 319, 331, 416, 641, 659, 684, 701, 731
CviKI_1	RGCY	9 cut(s)	72, 319, 331, 416, 641, 659, 684, 701, 731
CviQI	GTAC	3 cut(s)	155, 604, 707
DdeI	CTNAG	3 cut(s)	47, 350, 642
DpnI	GATC	4 cut(s)	169, 273, 442, 511
DpnII	GATC	4 cut(s)	167, 271, 440, 509
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
EciI	GGCGGA	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	534
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	132, 301, 536
FaeI	CATG	3 cut(s)	341, 384, 508
FaqI	GGGAC	2 cut(s)	215, 515
FatI	CATG	3 cut(s)	337, 380, 504
Fnu4HI	GCNGC	5 cut(s)	320, 573, 639, 657, 682
FokI	GGATG	1 cut(s)	483
Fsp4HI	GCNGC	5 cut(s)	320, 573, 639, 657, 682
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	5 cut(s)	320, 573, 639, 657, 682
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	72, 659, 684
Hin1II	CATG	3 cut(s)	341, 384, 508
HinfI	GANTC	2 cut(s)	125, 690
HphI	GGTGA	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	48, 177, 353, 546
Hpy188III	TCNNGA	3 cut(s)	338, 444, 694
HpyAV	CCTTC	4 cut(s)	133, 304, 364, 718
HpyCH4V	TGCA	4 cut(s)	380, 425, 474, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 422, 569, 581
HpyF3I	CTNAG	3 cut(s)	47, 350, 642
Hsp92II	CATG	3 cut(s)	341, 384, 508
Kzo9I	GATC	4 cut(s)	167, 271, 440, 509
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	3 cut(s)	306, 584, 650
LweI	GCATC	2 cut(s)	434, 461
MabI	ACCWGGT	2 cut(s)	301, 536
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	188, 342
MalI	GATC	4 cut(s)	169, 273, 442, 511
MboI	GATC	4 cut(s)	167, 271, 440, 509
MboII	GAAGA	3 cut(s)	97, 629, 730
MflI	RGATCY	2 cut(s)	167, 440
MluCI	AATT	4 cut(s)	15, 91, 464, 593
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	211, 359, 628, 708, 714
MseI	TTAA	3 cut(s)	437, 608, 663
MspA1I	CMGCKG	1 cut(s)	487
MspR9I	CCNGG	3 cut(s)	134, 303, 538
MvaI	CCWGG	3 cut(s)	134, 303, 538
MwoI	GCNNNNNNNGC	4 cut(s)	328, 422, 569, 581
NdeII	GATC	4 cut(s)	167, 271, 440, 509
NlaIII	CATG	3 cut(s)	341, 384, 508
NlaIV	GGNNCC	2 cut(s)	375, 685
NmeAIII	GCCGAG	1 cut(s)	48
NspI	RCATGY	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	308
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	690
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	321, 574, 640, 658, 683
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	132, 301, 536
PspGI	CCWGG	3 cut(s)	132, 301, 536
PspN4I	GGNNCC	2 cut(s)	375, 685
PspPI	GGNCC	2 cut(s)	534, 683
PsuI	RGATCY	2 cut(s)	167, 440
RsaI	GTAC	3 cut(s)	156, 605, 708
RsaNI	GTAC	3 cut(s)	155, 604, 707
SaqAI	TTAA	3 cut(s)	437, 608, 663
SatI	GCNGC	5 cut(s)	320, 573, 639, 657, 682
Sau3AI	GATC	4 cut(s)	167, 271, 440, 509
Sau96I	GGNCC	2 cut(s)	534, 683
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	134, 303, 538
SetI	ASST	8 cut(s)	304, 315, 321, 351, 375, 542, 643, 703
SexAI	ACCWGGT	2 cut(s)	301, 536
SfaNI	GCATC	2 cut(s)	434, 461
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	1 cut(s)	534
Sse9I	AATT	4 cut(s)	15, 91, 464, 593
SsiI	CCGC	4 cut(s)	485, 656, 673, 681
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	132, 301, 536
TaqI	TCGA	3 cut(s)	308, 445, 693
TasI	AATT	4 cut(s)	15, 91, 464, 593
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	2 cut(s)	659, 684
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	3 cut(s)	437, 608, 663
Tru9I	TTAA	3 cut(s)	437, 608, 663
TseI	GCWGC	3 cut(s)	319, 572, 638
TspDTI	ATGAA	3 cut(s)	126, 383, 477
VpaK11BI	GGWCC	1 cut(s)	534
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	384
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.