Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Forward (+)

8273144 .. 8279796

Gene Structure 6653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGTGGGACCCCCGAGGCCTCAGTTTGTTCTGTTCGGATCGTCCATAGTCCAGCTCAGCTTCAGCCACGGCGGCTGGGGCTCCGTTCTCTCCGACCTCTACGCTCGCAAAGCAGACATATTGCTGCGTGGTTACTTCGGATGGAATTCACGGCGTGCACTGGAGGTGCTTGATCAAGTTTTTCCCAAGGATGCAGCTGTTCAACCTTCTTTGGTGATAGTCTATTTTGGCGGGAATGATTCTATGGGGCCTCATCCATCTGGGCTAGGACCTCATGTACCACTTCCTGAGTATATTGAGAACATGAGGAAGATTGCAAATCATCTCCAGAGCCTTTCAGATTCAACACGCATCATTTTTCTTAGTTGTCCTCCCGTGAATGAGGCCACAGTTCGTGCAAATAAAAGGTGCTCAGATGGAACTCTTGTACTGTTGTTTTACCTTTTTTGTATGTCTGATATCCTAAAAGATGGGATTCATTTATCAGCTGAAGGGAGCAAAATAGTGGCGGAGGAGATACTGAAAGTACTGAGAGAAGCTGATTGGAAGCCAAGTTTACACTGGAAATCCATGCCAACAGAATTTGCAGAGGATTCACCACATGATCTTGTTGCTGCTGATGGAAAGACGACGAATTTGTCTTGGAGATGCGGGGAAGATTGTAAGGACACCAAGCGGGATATTTTGTTAAAATGGGAAATTACTATGACATTGACGATATTCTTGCCGAGGAAGAGTGTTCTGAATGTGTTTGCTGTTGGCAACCAGCTTGTTTCAGTTGTTTTCCAGAAAGGAGCAAATGGGGTTGGAATTGATCCTAGTGCTGAAGCCTATAGTGTCGAACCAGGTTCAAGGGTCAAGCTGCCGTTCTGGCTTGCTTATGAATTACACGCAAGACAAGTAGTGACAATGAAGCTTCCTGCAACAAGGCTGGAACTGGGGGCTGATGGAAAAGCTGTGGATTTGAGATCTCGATGTCTATACTTCTATGAATTTGGATGCAAGATAGCACCACTGGTTGGTGATAGAGACATGGGATCATTCCTATTATCTGCATTCAGAAACAGGTATCAGGAAGTCCTGGCCAAGGCACATTCTGCAGCATATACAGCAGCTTCAAAACTCTTGACGCTTTTAACAAAAGAAGAAATCAACTTGTATGAGGCAGCTCAATCTTCCATGGCAGCCTTTAAGAAGTGGCGGATGGGTGGCCCGAGATTGCAGAGAGCTTCCGTACTTGGGAGGAAGAGAAAATCAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

421

Amino Acids

46.76

Weight (kDa)

9.09

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	10 - 136	2.1e-12	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	11 - 130	1.3e-11	GDSL-like Lipase/Acylhydrolase family
Sld5	PF05916	312 - 400	5.2e-11	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	6 cut(s)	72, 231, 509, 651, 676, 1201
AclWI	GGATC	3 cut(s)	46, 809, 1045
AcoI	YGGCCR	1 cut(s)	1083
AcsI	RAATTY	4 cut(s)	145, 581, 634, 992
AcuI	CTGAAG	3 cut(s)	46, 510, 846
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	279, 429, 528, 1236
AfiI	CCNNNNNNNGG	3 cut(s)	1019, 1087, 1239
AgsI	TTSAA	4 cut(s)	203, 345, 852, 1119
AjnI	CCWGG	2 cut(s)	844, 1080
Alw21I	GWGCWC	2 cut(s)	160, 413
Alw26I	GTCTC	1 cut(s)	1023
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	46, 809, 1045
Ama87I	CYCGRG	2 cut(s)	13, 1213
AoxI	GGCC	5 cut(s)	17, 248, 384, 1083, 1210
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	8 cut(s)	124, 194, 614, 862, 1100, 1112, 1166, 1184
ApoI	RAATTY	4 cut(s)	145, 581, 634, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
AspS9I	GGNCC	4 cut(s)	8, 248, 269, 1211
AsuHPI	GGTGA	3 cut(s)	226, 588, 1034
AvaI	CYCGRG	2 cut(s)	13, 1213
AvaII	GGWCC	2 cut(s)	8, 269
BaeGI	GKGCMC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	1085
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	160, 413
BbvI	GCAGC	8 cut(s)	111, 206, 601, 849, 1112, 1124, 1178, 1196
BccI	CCATC	7 cut(s)	135, 265, 410, 464, 614, 941, 1198
BceAI	ACGGC	3 cut(s)	85, 167, 850
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	2 cut(s)	846, 1082
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	1023
BfaI	CTAG	2 cut(s)	266, 819
BfmI	CTRYAG	2 cut(s)	832, 1098
BglI	GCCNNNNNGGC	2 cut(s)	72, 871
BglII	AGATCT	1 cut(s)	968
BisI	GCNGC	9 cut(s)	73, 125, 195, 615, 863, 1101, 1113, 1167, 1185
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	9 cut(s)	74, 126, 196, 616, 864, 1102, 1114, 1168, 1186
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	846, 1082
Bme18I	GGWCC	2 cut(s)	8, 269
BmeT110I	CYCGRG	2 cut(s)	13, 1213
BmgT120I	GGNCC	4 cut(s)	8, 248, 269, 1211
BmiI	GGNNCC	4 cut(s)	9, 10, 82, 249
BmrFI	CCNGG	2 cut(s)	846, 1082
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	4 cut(s)	181, 360, 638, 989
BmuI	ACTGGG	1 cut(s)	947
BpmI	CTGGAG	2 cut(s)	182, 311
Bpu1102I	GCTNAGC	1 cut(s)	56
BsaJI	CCNNGG	6 cut(s)	14, 67, 186, 728, 1086, 1179
Bsc4I	CCNNNNNNNGG	3 cut(s)	1019, 1087, 1239
Bse1I	ACTGG	4 cut(s)	165, 566, 942, 1020
BseBI	CCWGG	2 cut(s)	846, 1082
BseDI	CCNNGG	6 cut(s)	14, 67, 186, 728, 1086, 1179
BseGI	GGATG	5 cut(s)	146, 196, 253, 1004, 1209
BseLI	CCNNNNNNNGG	3 cut(s)	1019, 1087, 1239
BseMII	CTCAG	5 cut(s)	35, 70, 279, 426, 521
BseNI	ACTGG	4 cut(s)	165, 566, 942, 1020
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	8 cut(s)	111, 206, 601, 849, 1112, 1124, 1178, 1196
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	5 cut(s)	19, 250, 386, 1085, 1212
BsiHKAI	GWGCWC	2 cut(s)	160, 413
BsiHKCI	CYCGRG	2 cut(s)	13, 1213
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	1019, 1087, 1239
BsmAI	GTCTC	1 cut(s)	1023
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	5 cut(s)	19, 250, 386, 1085, 1212
BsoBI	CYCGRG	2 cut(s)	13, 1213
Bsp1286I	GDGCHC	3 cut(s)	83, 160, 413
Bsp143I	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
Bsp1720I	GCTNAGC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	1179
BspACI	CCGC	6 cut(s)	72, 231, 509, 651, 676, 1201
BspANI	GGCC	5 cut(s)	19, 250, 386, 1085, 1212
BspCNI	CTCAG	5 cut(s)	34, 69, 280, 425, 522
BspLI	GGNNCC	4 cut(s)	9, 10, 82, 249
BspMAI	CTGCAG	1 cut(s)	1102
BspPI	GGATC	3 cut(s)	46, 809, 1045
BsrI	ACTGG	4 cut(s)	165, 566, 942, 1020
BssECI	CCNNGG	6 cut(s)	14, 67, 186, 728, 1086, 1179
BssMI	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
BssT1I	CCWWGG	3 cut(s)	186, 1086, 1179
Bst2UI	CCWGG	2 cut(s)	846, 1082
Bst4CI	ACNGT	2 cut(s)	391, 432
Bst6I	CTCTTC	2 cut(s)	728, 1241
BstAPI	GCANNNNNTGC	1 cut(s)	1097
BstC8I	GCNNGC	3 cut(s)	106, 156, 876
BstDEI	CTNAG	6 cut(s)	21, 56, 288, 362, 412, 530
BstDSI	CCRYGG	2 cut(s)	67, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	5 cut(s)	146, 196, 253, 1004, 1209
BstKTI	GATC	6 cut(s)	41, 175, 607, 817, 971, 1040
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 78, 110, 871, 1097, 1109
BstNI	CCWGG	2 cut(s)	846, 1082
BstSCI	CCNGG	2 cut(s)	844, 1080
BstSFI	CTRYAG	2 cut(s)	832, 1098
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	8 cut(s)	111, 206, 601, 849, 1112, 1124, 1178, 1196
BstX2I	RGATCY	1 cut(s)	968
BstYI	RGATCY	1 cut(s)	968
BsuRI	GGCC	5 cut(s)	19, 250, 386, 1085, 1212
BtgI	CCRYGG	2 cut(s)	67, 1179
BtsCI	GGATG	5 cut(s)	146, 196, 253, 1004, 1209
BtsIMutI	CAGTG	3 cut(s)	158, 559, 1013
Cac8I	GCNNGC	3 cut(s)	106, 156, 876
Cfr13I	GGNCC	4 cut(s)	8, 248, 269, 1211
CseI	GACGC	1 cut(s)	1138
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	278, 428, 527, 1235
CviAII	CATG	6 cut(s)	275, 304, 571, 602, 1033, 1180
CviQI	GTAC	4 cut(s)	278, 428, 527, 1235
DdeI	CTNAG	6 cut(s)	21, 56, 288, 362, 412, 530
DpnI	GATC	6 cut(s)	40, 174, 606, 816, 970, 1039
DpnII	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
DraIII	CACNNNGTG	1 cut(s)	155
DrdI	GACNNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	1083
Eam1104I	CTCTTC	2 cut(s)	728, 1241
EarI	CTCTTC	2 cut(s)	728, 1241
EciI	GGCGGA	2 cut(s)	524, 1216
Eco130I	CCWWGG	3 cut(s)	186, 1086, 1179
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	8, 269
Eco57I	CTGAAG	3 cut(s)	46, 510, 846
Eco88I	CYCGRG	2 cut(s)	13, 1213
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoO109I	RGGNCCY	3 cut(s)	8, 248, 269
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	844, 1080
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	3 cut(s)	186, 1086, 1179
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	3 cut(s)	186, 1086, 1179
FaeI	CATG	6 cut(s)	278, 307, 574, 605, 1036, 1183
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	6 cut(s)	274, 303, 570, 601, 1032, 1179
FauI	CCCGC	3 cut(s)	224, 644, 669
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	9 cut(s)	73, 125, 195, 615, 863, 1101, 1113, 1167, 1185
FokI	GGATG	5 cut(s)	153, 203, 240, 1011, 1216
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	9 cut(s)	73, 125, 195, 615, 863, 1101, 1113, 1167, 1185
FspBI	CTAG	2 cut(s)	266, 819
GluI	GCNGC	9 cut(s)	73, 125, 195, 615, 863, 1101, 1113, 1167, 1185
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	2 cut(s)	182, 311
HaeIII	GGCC	5 cut(s)	19, 250, 386, 1085, 1212
HgaI	GACGC	1 cut(s)	1138
Hin1II	CATG	6 cut(s)	278, 307, 574, 605, 1036, 1183
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	4 cut(s)	239, 341, 475, 593
HphI	GGTGA	3 cut(s)	226, 588, 1034
Hpy166II	GTNNAC	2 cut(s)	158, 557
Hpy188I	TCNGA	8 cut(s)	38, 94, 140, 340, 415, 457, 744, 1061
Hpy188III	TCNNGA	6 cut(s)	287, 328, 787, 972, 1073, 1126
Hpy8I	GTNNAC	2 cut(s)	158, 557
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	2 cut(s)	216, 485
HpyCH4III	ACNGT	2 cut(s)	391, 432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 78, 110, 871, 1097, 1109
HpyF3I	CTNAG	6 cut(s)	21, 56, 288, 362, 412, 530
Hsp92II	CATG	6 cut(s)	278, 307, 574, 605, 1036, 1183
KflI	GGGWCCC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
LmnI	GCTCC	3 cut(s)	86, 495, 794
Lsp1109I	GCAGC	8 cut(s)	111, 206, 601, 849, 1112, 1124, 1178, 1196
LweI	GCATC	4 cut(s)	181, 360, 638, 989
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	2 cut(s)	266, 819
MaeIII	GTNAC	2 cut(s)	131, 904
MalI	GATC	6 cut(s)	40, 174, 606, 816, 970, 1039
MboI	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
MboII	GAAGA	6 cut(s)	322, 668, 745, 1157, 1167, 1258
MflI	RGATCY	1 cut(s)	968
MhlI	GDGCHC	3 cut(s)	83, 160, 413
MlsI	TGGCCA	1 cut(s)	1085
MluCI	AATT	7 cut(s)	145, 581, 634, 699, 810, 884, 992
MluNI	TGGCCA	1 cut(s)	1085
MmeI	TCCRAC	2 cut(s)	117, 787
Mox20I	TGGCCA	1 cut(s)	1085
MscI	TGGCCA	1 cut(s)	1085
MseI	TTAA	3 cut(s)	689, 1136, 1191
Msp20I	TGGCCA	1 cut(s)	1085
MspA1I	CMGCKG	2 cut(s)	197, 488
MspR9I	CCNGG	2 cut(s)	846, 1082
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	2 cut(s)	846, 1082
MwoI	GCNNNNNNNGC	6 cut(s)	72, 78, 110, 871, 1097, 1109
NcoI	CCATGG	1 cut(s)	1179
NdeII	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
NlaIII	CATG	6 cut(s)	278, 307, 574, 605, 1036, 1183
NlaIV	GGNNCC	4 cut(s)	9, 10, 82, 249
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	19
PctI	GAATGC	1 cut(s)	1055
PfeI	GAWTC	4 cut(s)	239, 341, 475, 593
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	9 cut(s)	74, 126, 196, 616, 864, 1102, 1114, 1168, 1186
PpuMI	RGGWCCY	2 cut(s)	8, 269
Psp5II	RGGWCCY	2 cut(s)	8, 269
Psp6I	CCWGG	2 cut(s)	844, 1080
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	2 cut(s)	844, 1080
PspN4I	GGNNCC	4 cut(s)	9, 10, 82, 249
PspPI	GGNCC	4 cut(s)	8, 248, 269, 1211
PspPPI	RGGWCCY	2 cut(s)	8, 269
PstI	CTGCAG	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	968
PvuII	CAGCTG	2 cut(s)	197, 488
RsaI	GTAC	4 cut(s)	279, 429, 528, 1236
RsaNI	GTAC	4 cut(s)	278, 428, 527, 1235
SaqAI	TTAA	3 cut(s)	689, 1136, 1191
SatI	GCNGC	9 cut(s)	73, 125, 195, 615, 863, 1101, 1113, 1167, 1185
Sau3AI	GATC	6 cut(s)	38, 172, 604, 814, 968, 1037
Sau96I	GGNCC	4 cut(s)	8, 248, 269, 1211
ScaI	AGTACT	1 cut(s)	528
ScrFI	CCNGG	2 cut(s)	846, 1082
SduI	GDGCHC	3 cut(s)	83, 160, 413
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	4 cut(s)	181, 360, 638, 989
SfcI	CTRYAG	2 cut(s)	832, 1098
SinI	GGWCC	2 cut(s)	8, 269
Sse9I	AATT	7 cut(s)	145, 581, 634, 699, 810, 884, 992
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	6 cut(s)	72, 231, 509, 651, 676, 1201
SspMI	CTAG	2 cut(s)	266, 819
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	844, 1080
StyI	CCWWGG	3 cut(s)	186, 1086, 1179
TaaI	ACNGT	2 cut(s)	391, 432
TaqI	TCGA	2 cut(s)	840, 973
TasI	AATT	7 cut(s)	145, 581, 634, 699, 810, 884, 992
TatI	WGTACW	2 cut(s)	427, 526
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	4 cut(s)	239, 341, 475, 593
Tru1I	TTAA	3 cut(s)	689, 1136, 1191
Tru9I	TTAA	3 cut(s)	689, 1136, 1191
TscAI	CASTG	3 cut(s)	165, 566, 1020
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	8 cut(s)	124, 194, 614, 862, 1100, 1112, 1166, 1184
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	4 cut(s)	467, 897, 926, 1005
TspGWI	ACGGA	2 cut(s)	73, 1222
TspRI	CASTG	3 cut(s)	165, 566, 1020
Van91I	CCANNNNNTGG	1 cut(s)	1019
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	8, 269
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	4 cut(s)	145, 581, 634, 992
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	2 cut(s)	266, 819
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.