Rorug01G0354300

DNA replication complex GINS protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008442
Physical Location & Seq
Reverse (-)
47098337 .. 47099626
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0354300.1

Sequence Viewer

Length: 1020 bp
ATGAACACCCTCCGATCATACCCAAATCAGACACCACAAAATTGCTATGCTTTGCCTGTCAATAAGCAAACCGTACGCTACCTGATTCGGGTTGGGTTCTACTATGGCAACTATGATGGTCTCTCGAACCCTCCATCGTTCGAAATTCATATCGACGGCCAAAAATGGTCGATGGTCAAAACATCAACCGTGGGAGAAGGGCCAATATACCATGAAGCCTTGTATGAGACTCAAGGGTCAGGTTCTGTTAGTCTTTGCGTTGTGCAAGTTAAGGATGGAGGGGTTCCCTTTATTTCTTCAATAGAAGCTGTTCCGTTATCTGCTTCTTCTAATCCATTGTACCCTAAGATGGAGACAAACAACACTTTCGATTTAGTATCCAGGATAAACTTTGGTGGTGATGAAATAAGGTTCACAGGGTTATTATCAGAAAACTATAACCGAATATGGACACGAGGAACAACTCCGCCAAACTGCAACGAAGTTTCTACCTTACCAGATATACTCTCCCCAGAAAATGACCCTCCTATTTCAGTGTTGCGCACCGCCATAGAATCAATAGACCTTACCCATCCAATAACCTTGTCCGTTGGCCTCTCGCAAATAACCCCCCAGTCAGCTTATTTTGTGCTCTATTTTACCGAAACGACAAGCCTACCTAAACCAGGCGACACCAGAATCATTCAGATCAACATCAATGGTCAAATGAAATCCACAGTGACACTTGAGTTCACCAAATGCAAGGTGATCACATTATACCCTGTGATCGTCGAGGGTACAACAATTAACGTGACATTGGCCTCGGCTAGTAGCTCCACCCTACCTCCGATCATCAGTGCAATGGAAGTGTTCACAAGAGTGGATCATGAAAAGAATTCACCTCCTCCTCCTCCTCCTTCTCCAGCCTCACATGAAAAGAGTTCATCTCCTCCTTATTCTTCATCATCAGTACTAGAGGAAACTTCTTCTGTGCGCATATTTATATCGTTTCTTGTGTTTGTTTGTTTCTTCTATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sld5

Protein Analysis

339

Amino Acids

37.33

Weight (kDa)

5.3

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 285 3.7e-53 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc16I TGCGCA 2 cut(s) 542, 974
AciI CCGC 2 cut(s) 467, 546
AclWI GGATC 1 cut(s) 870
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 2 cut(s) 144, 874
AfaI GTAC 4 cut(s) 75, 341, 778, 951
AfiI CCNNNNNNNGG 3 cut(s) 88, 349, 665
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 2 cut(s) 380, 664
AleI CACNNNNGTG 1 cut(s) 857
AluBI AGCT 3 cut(s) 308, 620, 813
AluI AGCT 3 cut(s) 308, 620, 813
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 3 cut(s) 125, 221, 347
AlwI GGATC 1 cut(s) 870
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 4 cut(s) 157, 200, 592, 798
ApoI RAATTY 2 cut(s) 144, 874
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 543, 975
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 4 cut(s) 410, 724, 757, 870
AsuII TTCGAA 1 cut(s) 141
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 633
BccI CCATC 6 cut(s) 110, 142, 166, 269, 343, 579
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 382, 666
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 747
BcoDI GTCTC 3 cut(s) 125, 221, 347
BfaI CTAG 3 cut(s) 807, 953, 1018
BfuI GTATCC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 951
Bme1390I CCNGG 2 cut(s) 382, 666
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 382, 666
BmrI ACTGGG 1 cut(s) 607
BmuI ACTGGG 1 cut(s) 607
BplI GAGNNNNNCTC 2 cut(s) 910, 942
BpmI CTGGAG 1 cut(s) 885
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 216, 746
BsaBI GATNNNNATC 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 189, 801
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 349, 665
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 692
BseBI CCWGG 2 cut(s) 382, 666
BseDI CCNNGG 2 cut(s) 189, 801
BseGI GGATG 2 cut(s) 280, 571
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 3 cut(s) 88, 349, 665
BseMI GCAATG 1 cut(s) 846
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 5 cut(s) 873, 876, 879, 882, 918
BshFI GGCC 4 cut(s) 159, 202, 594, 800
BsiHKAI GWGCWC 1 cut(s) 633
BsiWI CGTACG 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 88, 349, 665
BsmAI GTCTC 3 cut(s) 125, 221, 347
BsnI GGCC 4 cut(s) 159, 202, 594, 800
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 6 cut(s) 14, 687, 747, 765, 828, 862
BspACI CCGC 2 cut(s) 467, 546
BspANI GGCC 4 cut(s) 159, 202, 594, 800
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 870
BspT104I TTCGAA 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 189, 801
BssMI GATC 6 cut(s) 14, 687, 747, 765, 828, 862
BssSI CACGAG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 382, 666
Bst4CI ACNGT 3 cut(s) 73, 190, 718
BstBI TTCGAA 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 280, 571
BstHHI GCGC 2 cut(s) 543, 975
BstKTI GATC 6 cut(s) 17, 690, 750, 768, 831, 865
BstMAI GTCTC 3 cut(s) 125, 221, 347
BstMBI GATC 6 cut(s) 14, 687, 747, 765, 828, 862
BstNI CCWGG 2 cut(s) 382, 666
BstSCI CCNGG 2 cut(s) 380, 664
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 159, 202, 594, 800
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 280, 571
BtsIMutI CAGTG 3 cut(s) 540, 723, 841
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 865
CfoI GCGC 2 cut(s) 543, 975
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 4 cut(s) 74, 340, 777, 950
CviAII CATG 3 cut(s) 212, 866, 911
CviQI GTAC 4 cut(s) 74, 340, 777, 950
DdeI CTNAG 1 cut(s) 345
DpnI GATC 6 cut(s) 16, 689, 749, 767, 830, 864
DpnII GATC 6 cut(s) 14, 687, 747, 765, 828, 862
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 157
EciI GGCGGA 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 2 cut(s) 380, 664
FaeI CATG 3 cut(s) 215, 869, 914
FatI CATG 3 cut(s) 211, 865, 910
FbaI TGATCA 1 cut(s) 747
FokI GGATG 2 cut(s) 287, 558
FspAI RTGCGCAY 1 cut(s) 974
FspBI CTAG 3 cut(s) 807, 953, 1018
FspI TGCGCA 2 cut(s) 542, 974
GlaI GCGC 2 cut(s) 542, 974
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 4 cut(s) 159, 202, 594, 800
HhaI GCGC 2 cut(s) 543, 975
Hin1II CATG 3 cut(s) 215, 869, 914
Hin6I GCGC 2 cut(s) 541, 973
HinP1I GCGC 2 cut(s) 541, 973
HinfI GANTC 4 cut(s) 85, 229, 554, 678
HphI GGTGA 4 cut(s) 410, 724, 757, 870
Hpy166II GTNNAC 3 cut(s) 414, 732, 852
Hpy188I TCNGA 5 cut(s) 14, 30, 430, 687, 828
Hpy188III TCNNGA 2 cut(s) 124, 866
Hpy8I GTNNAC 3 cut(s) 414, 732, 852
Hpy99I CGWCG 2 cut(s) 158, 773
HpyAV CCTTC 2 cut(s) 191, 906
HpyCH4III ACNGT 3 cut(s) 73, 190, 718
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 4 cut(s) 265, 477, 741, 839
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 3 cut(s) 215, 869, 914
HspAI GCGC 2 cut(s) 541, 973
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 6 cut(s) 14, 687, 747, 765, 828, 862
LmnI GCTCC 1 cut(s) 818
MaeI CTAG 3 cut(s) 807, 953, 1018
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 718, 790
MalI GATC 6 cut(s) 16, 689, 749, 767, 830, 864
MboI GATC 6 cut(s) 14, 687, 747, 765, 828, 862
MboII GAAGA 5 cut(s) 288, 318, 930, 957, 1000
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 4 cut(s) 40, 144, 783, 874
MlyI GAGTC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 2 cut(s) 270, 786
MslI CAYNNNNRTG 1 cut(s) 857
MspR9I CCNGG 2 cut(s) 382, 666
MvaI CCWGG 2 cut(s) 382, 666
NdeII GATC 6 cut(s) 14, 687, 747, 765, 828, 862
NlaIII CATG 3 cut(s) 215, 869, 914
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 782
NmuCI GTSAC 2 cut(s) 718, 790
NsbI TGCGCA 2 cut(s) 542, 974
NspV TTCGAA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 857
PagI TCATGA 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 85, 554, 678
Pfl23II CGTACG 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 380
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 380, 664
PspGI CCWGG 2 cut(s) 380, 664
PspLI CGTACG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 4 cut(s) 75, 341, 778, 951
RsaNI GTAC 4 cut(s) 74, 340, 777, 950
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 2 cut(s) 270, 786
Sau3AI GATC 6 cut(s) 14, 687, 747, 765, 828, 862
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 951
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 382, 666
SduI GDGCHC 1 cut(s) 633
SfuI TTCGAA 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 2 cut(s) 231, 725
SmoI CTYRAG 2 cut(s) 231, 725
Sse9I AATT 4 cut(s) 40, 144, 783, 874
SsiI CCGC 2 cut(s) 467, 546
SspMI CTAG 3 cut(s) 807, 953, 1018
StyD4I CCNGG 2 cut(s) 380, 664
TaaI ACNGT 3 cut(s) 73, 190, 718
TaiI ACGT 1 cut(s) 792
TaqI TCGA 6 cut(s) 125, 141, 153, 170, 369, 771
TasI AATT 4 cut(s) 40, 144, 783, 874
TatI WGTACW 1 cut(s) 949
TfiI GAWTC 3 cut(s) 85, 554, 678
Tru1I TTAA 2 cut(s) 270, 786
Tru9I TTAA 2 cut(s) 270, 786
TscAI CASTG 3 cut(s) 540, 723, 841
TseFI GTSAC 2 cut(s) 718, 790
Tsp45I GTSAC 2 cut(s) 718, 790
TspDTI ATGAA 9 cut(s) 17, 137, 228, 417, 722, 882, 912, 927, 930
TspGWI ACGGA 2 cut(s) 303, 577
TspRI CASTG 3 cut(s) 540, 723, 841
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 2 cut(s) 144, 874
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 3 cut(s) 807, 953, 1018
ZrmI AGTACT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.