Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Forward (+)

18857706 .. 18860972

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24440.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGGAATTACTATGACATTGATGATATTCTTGCCGAGGACGAGCTTGTATCAGTCATTTTCCAGAAAGGAGCAAATGGGGTTGGAATAGATCCTAGTGCTGAAGCCTATGGTGTTGAACCAGGTTCAAAGGTCAAGCTGCCGTTCTGGCTAGCTTACGAGTTACACGTTAGACAAGTAGTAACGATGAAGCTTCCCGCGTGTTTCAATCAACAAACAAGGCTGGAACTGGGGGCCGACGGAAAAGCTGTGGACTTGAGATCTCGATGTTTATACTTCTATGAATTTGGATGCAAGATAGCACCACTGGTTGGCGACAGAGACATGGGATCATTCCTATTATCTGCATTTAGGAACAGGTATCAGGAAGTCCTGGCCAAGGCGCATTCTGCAGCATATACAGCAGCTTCAAAACTCTTGACGCTCTTAACAAAAGAAGAAATTAACTTATATGAGGCGGCTCAATCCTCCATGGCAGCCTTTAAGAAGTGGCGGATGGGTGGCCCGAGATTACAGAGAGCTTCCGTACTTGGGAGGAAGAGGAAATCGACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

186

Amino Acids

20.63

Weight (kDa)

8.91

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF3_N	PF22466	5 - 56	4.2e-08	PSF3 N-terminal domain
Sld5	PF05916	70 - 165	4.4e-12	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	198, 458, 493
AclWI	GGATC	2 cut(s)	86, 337
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	119, 129, 208, 411
AjnI	CCWGG	2 cut(s)	121, 372
AluBI	AGCT	7 cut(s)	46, 139, 155, 193, 248, 407, 521
AluI	AGCT	7 cut(s)	46, 139, 155, 193, 248, 407, 521
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	86, 337
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	3 cut(s)	234, 375, 502
ApeKI	GCWGC	4 cut(s)	139, 392, 404, 476
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	234, 503
AsuNHI	GCTAGC	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	126, 404, 416, 488
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	123, 374
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	3 cut(s)	96, 152, 556
BfmI	CTRYAG	1 cut(s)	390
BglI	GCCNNNNNGGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
BlsI	GCNGC	5 cut(s)	141, 394, 406, 460, 478
Bme1390I	CCNGG	2 cut(s)	123, 374
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	234, 503
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	123, 374
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	281
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	36, 378, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 379, 531
Bse1I	ACTGG	2 cut(s)	234, 312
BseBI	CCWGG	2 cut(s)	123, 374
BseDI	CCNNGG	3 cut(s)	36, 378, 471
BseGI	GGATG	2 cut(s)	296, 501
BseLI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
BseNI	ACTGG	2 cut(s)	234, 312
BseXI	GCAGC	4 cut(s)	126, 404, 416, 488
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	236, 377, 504
BsiHKCI	CYCGRG	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	311, 379, 531
BsmAI	GTCTC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	236, 377, 504
BsoBI	CYCGRG	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	91, 260, 329
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	3 cut(s)	198, 458, 493
BspANI	GGCC	3 cut(s)	236, 377, 504
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	86, 337
BsrI	ACTGG	2 cut(s)	234, 312
BssECI	CCNNGG	3 cut(s)	36, 378, 471
BssMI	GATC	3 cut(s)	91, 260, 329
BssT1I	CCWWGG	2 cut(s)	378, 471
Bst2UI	CCWGG	2 cut(s)	123, 374
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	471
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	296, 501
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	94, 263, 332
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	3 cut(s)	91, 260, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
BstNI	CCWGG	2 cut(s)	123, 374
BstSCI	CCNGG	2 cut(s)	121, 372
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	4 cut(s)	126, 404, 416, 488
BstX2I	RGATCY	2 cut(s)	91, 260
BstYI	RGATCY	2 cut(s)	91, 260
BsuRI	GGCC	3 cut(s)	236, 377, 504
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	296, 501
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	234, 503
CseI	GACGC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	2 cut(s)	325, 472
CviQI	GTAC	1 cut(s)	527
DpnI	GATC	3 cut(s)	93, 262, 331
DpnII	GATC	3 cut(s)	91, 260, 329
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	378, 471
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	121, 372
EcoT14I	CCWWGG	2 cut(s)	378, 471
ErhI	CCWWGG	2 cut(s)	378, 471
FaeI	CATG	2 cut(s)	328, 475
FatI	CATG	2 cut(s)	324, 471
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
FokI	GGATG	2 cut(s)	303, 508
Fsp4HI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
FspBI	CTAG	3 cut(s)	96, 152, 556
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
HaeIII	GGCC	3 cut(s)	236, 377, 504
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	2 cut(s)	328, 475
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	4 cut(s)	64, 264, 365, 418
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	294, 347, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	328, 475
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	91, 260, 329
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	4 cut(s)	126, 404, 416, 488
LweI	GCATC	1 cut(s)	281
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	3 cut(s)	96, 152, 556
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	162, 181
MalI	GATC	3 cut(s)	93, 262, 331
MboI	GATC	3 cut(s)	91, 260, 329
MboII	GAAGA	2 cut(s)	449, 550
MflI	RGATCY	2 cut(s)	91, 260
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	7, 284, 441
MluNI	TGGCCA	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	31, 448, 478, 528, 534
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	428, 444, 483
Msp20I	TGGCCA	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	123, 374
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	123, 374
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	148, 389, 401
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	91, 260, 329
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	328, 475
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	141, 394, 406, 460, 478
Psp6I	CCWGG	2 cut(s)	121, 372
PspGI	CCWGG	2 cut(s)	121, 372
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	234, 503
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	91, 260
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SaqAI	TTAA	3 cut(s)	428, 444, 483
SatI	GCNGC	5 cut(s)	140, 393, 405, 459, 477
Sau3AI	GATC	3 cut(s)	91, 260, 329
Sau96I	GGNCC	2 cut(s)	234, 503
ScrFI	CCNGG	2 cut(s)	123, 374
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	7, 284, 441
SsiI	CCGC	3 cut(s)	198, 458, 493
SspMI	CTAG	3 cut(s)	96, 152, 556
StyD4I	CCNGG	2 cut(s)	121, 372
StyI	CCWWGG	2 cut(s)	378, 471
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	265, 548
TasI	AATT	3 cut(s)	7, 284, 441
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	428, 444, 483
Tru9I	TTAA	3 cut(s)	428, 444, 483
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	4 cut(s)	139, 392, 404, 476
TspDTI	ATGAA	2 cut(s)	203, 297
TspGWI	ACGGA	2 cut(s)	255, 514
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	3 cut(s)	96, 152, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.