Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005083.1

Orthogroup ID

OG0008442

Physical Location & Seq

Genomic Coordinates Reverse (-)

67523 .. 70424

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005083.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgggaaattactatgacattgacgatattcttgccgaggaagagcttgtctcagttgttttccagaaaggagcaaatggggttggaattgatcctagtgctgaagcctatagtgtcgaaccaggttcaaaggtcaagctgccgttctggcttgcttatgaattacacgcaagacaagtagtaacgatgaagcttcctgcgtgtttcaatcaacaaacaaggctggaactgggggctgatggaaaagctgtggatttgagatctcgatgtctatacttctatgaatttggatgcaagatagcaccactggttggtgatagagacatgggatcattcctgttatctgcattcaggaacaggtatcaggaagtcctggccaaggcacattctgcagcatatacagcagcttcaaaacttttgacgctcttaacaaaagaagaaatcaacttgtatgaggcagctcaatcctccatggcagcctttaagaagtggcggatgggtggcccgagattgcagagagcttccgacgtcgtcgtcggatgggcagcttggttctatgagtccacggtatcgggacaggttttggggcaggaaccagagttggggaaagcctatggagagaggtcggcaggcggcggtgtgtctccgatctgctcagaggtggaggacgagtgcaagggtggtgcggcggaggggatctggtgtctggtggggacgatctcgggctcacagataggcggtcgttgcttgtttcccggcatcggtgtcgtggaaagcttatggtggcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

263

Amino Acids

28.63

Weight (kDa)

5.15

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19080 AT1G19080 AT3G55490
fragaria_vesca	FvH4_7g24440 FvH4_7g24440 FvH4_7g24440
malus_domestica	MD01G1152600.v1.1
prunus_persica	Prupe.2G202300_v2.0.a1 Prupe.2G249700_v2.0.a1
pyrus_communis	pycom01g17030
rosa_chinensis	RchiOBHm_Chr1g0370121
rosa_laevigata	RLG00000027072
rosa_multiflora	Rmu_sc0005056.1_g000002 Rmu_sc0005083.1_g000015 Rmu_sc0011509.1_g000003
rosa_roxburghii	Rroxscaffold_4G00286800 Rroxscaffold_4G00287220
rosa_rugosa	Rorug01G0354300
rosa_samantha	Rh1AG362800 Rh1BG326000 Rh1CG339300 Rh1DG356500
rosa_wichuraiana	Rw1G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AatII	GACGTC	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	6 cut(s)	493, 633, 636, 686, 689, 738
AclWI	GGATC	3 cut(s)	86, 337, 704
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	528
AfiI	CCNNNNNNNGG	4 cut(s)	311, 379, 602, 761
AgsI	TTSAA	3 cut(s)	129, 208, 411
AjnI	CCWGG	2 cut(s)	121, 372
AluBI	AGCT	9 cut(s)	46, 139, 193, 248, 407, 461, 521, 548, 777
AluI	AGCT	9 cut(s)	46, 139, 193, 248, 407, 461, 521, 548, 777
Alw26I	GTCTC	3 cut(s)	55, 315, 648
AlwI	GGATC	3 cut(s)	86, 337, 704
Ama87I	CYCGRG	2 cut(s)	505, 721
AoxI	GGCC	2 cut(s)	375, 502
ApeKI	GCWGC	6 cut(s)	139, 392, 404, 458, 476, 545
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	756
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	2 cut(s)	505, 721
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	728
BbvI	GCAGC	6 cut(s)	126, 404, 416, 470, 488, 557
BccI	CCATC	3 cut(s)	233, 490, 534
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	4 cut(s)	14, 48, 748, 782
BciT130I	CCWGG	2 cut(s)	123, 374
BcnI	CCSGG	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	55, 315, 648
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	2 cut(s)	109, 390
BglI	GCCNNNNNGGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	8 cut(s)	140, 393, 405, 459, 477, 546, 634, 687
BlsI	GCNGC	8 cut(s)	141, 394, 406, 460, 478, 547, 635, 688
Bme1390I	CCNGG	3 cut(s)	123, 374, 756
BmeT110I	CYCGRG	2 cut(s)	505, 721
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	3 cut(s)	123, 374, 756
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	281, 768
BmuI	ACTGGG	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpuMI	CCSGG	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	4 cut(s)	36, 378, 471, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 379, 602, 761
Bse1I	ACTGG	2 cut(s)	234, 312
BseBI	CCWGG	2 cut(s)	123, 374
BseDI	CCNNGG	4 cut(s)	36, 378, 471, 564
BseGI	GGATG	3 cut(s)	296, 501, 545
BseLI	CCNNNNNNNGG	4 cut(s)	311, 379, 602, 761
BseMII	CTCAG	2 cut(s)	66, 669
BseNI	ACTGG	2 cut(s)	234, 312
BseXI	GCAGC	6 cut(s)	126, 404, 416, 470, 488, 557
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	2 cut(s)	377, 504
BsiEI	CGRYCG	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	505, 721
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	2 cut(s)	588, 727
BslI	CCNNNNNNNGG	4 cut(s)	311, 379, 602, 761
BsmAI	GTCTC	3 cut(s)	55, 315, 648
BsmFI	GGGAC	2 cut(s)	588, 727
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	377, 504
BsoBI	CYCGRG	2 cut(s)	505, 721
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	6 cut(s)	493, 633, 636, 686, 689, 738
BspANI	GGCC	2 cut(s)	377, 504
BspCNI	CTCAG	2 cut(s)	65, 668
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	3 cut(s)	86, 337, 704
BspQI	GCTCTTC	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	234, 312
BssECI	CCNNGG	4 cut(s)	36, 378, 471, 564
BssMI	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	378, 471
Bst2UI	CCWGG	2 cut(s)	123, 374
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	153, 631
BstDEI	CTNAG	2 cut(s)	52, 655
BstDSI	CCRYGG	2 cut(s)	471, 564
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	296, 501, 545
BstKTI	GATC	6 cut(s)	94, 263, 332, 651, 699, 720
BstMAI	GTCTC	3 cut(s)	55, 315, 648
BstMBI	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 389, 401, 744
BstNI	CCWGG	2 cut(s)	123, 374
BstSCI	CCNGG	3 cut(s)	121, 372, 754
BstSFI	CTRYAG	2 cut(s)	109, 390
BstV1I	GCAGC	6 cut(s)	126, 404, 416, 470, 488, 557
BstX2I	RGATCY	2 cut(s)	260, 696
BstYI	RGATCY	2 cut(s)	260, 696
BsuRI	GGCC	2 cut(s)	377, 504
BtgI	CCRYGG	2 cut(s)	471, 564
BtsCI	GGATG	3 cut(s)	296, 501, 545
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	153, 631
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	121
CviAII	CATG	2 cut(s)	325, 472
DdeI	CTNAG	2 cut(s)	52, 655
DpnI	GATC	6 cut(s)	93, 262, 331, 650, 698, 719
DpnII	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	508, 704
Eco130I	CCWWGG	2 cut(s)	378, 471
Eco24I	GRGCYC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	505, 721
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	121, 372
EcoT14I	CCWWGG	2 cut(s)	378, 471
EcoT38I	GRGCYC	1 cut(s)	728
ErhI	CCWWGG	2 cut(s)	378, 471
FaeI	CATG	2 cut(s)	328, 475
FaqI	GGGAC	2 cut(s)	588, 727
FatI	CATG	2 cut(s)	324, 471
Fnu4HI	GCNGC	8 cut(s)	140, 393, 405, 459, 477, 546, 634, 687
FokI	GGATG	3 cut(s)	303, 508, 552
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	8 cut(s)	140, 393, 405, 459, 477, 546, 634, 687
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	8 cut(s)	140, 393, 405, 459, 477, 546, 634, 687
HaeIII	GGCC	2 cut(s)	377, 504
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	328, 475
HindIII	AAGCTT	2 cut(s)	191, 775
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	4 cut(s)	526, 539, 648, 658
Hpy188III	TCNNGA	5 cut(s)	64, 264, 352, 365, 573
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	4 cut(s)	530, 533, 536, 539
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	294, 347, 392, 514, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 389, 401, 744
HpyF3I	CTNAG	2 cut(s)	52, 655
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	2 cut(s)	328, 475
Kzo9I	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	6 cut(s)	126, 404, 416, 470, 488, 557
LweI	GCATC	2 cut(s)	281, 768
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	6 cut(s)	93, 262, 331, 650, 698, 719
MboI	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
MboII	GAAGA	2 cut(s)	53, 449
MflI	RGATCY	2 cut(s)	260, 696
MhlI	GDGCHC	1 cut(s)	728
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	7, 87, 161, 284
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	3 cut(s)	64, 517, 549
MnlI	CCTC	7 cut(s)	31, 448, 478, 615, 652, 658, 685
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	428, 483
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	3 cut(s)	123, 374, 756
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	123, 374
MwoI	GCNNNNNNNGC	4 cut(s)	148, 389, 401, 744
NciI	CCSGG	1 cut(s)	756
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
NlaIII	CATG	2 cut(s)	328, 475
NlaIV	GGNNCC	1 cut(s)	594
NmeAIII	GCCGAG	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	347
PflFI	GACNNNGTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	8 cut(s)	141, 394, 406, 460, 478, 547, 635, 688
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	121, 372
PspGI	CCWGG	2 cut(s)	121, 372
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	260, 696
PsyI	GACNNNGTC	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	428, 483
SatI	GCNGC	8 cut(s)	140, 393, 405, 459, 477, 546, 634, 687
Sau3AI	GATC	6 cut(s)	91, 260, 329, 648, 696, 717
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	123, 374, 756
SduI	GDGCHC	1 cut(s)	728
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	281, 768
SfcI	CTRYAG	2 cut(s)	109, 390
Sse9I	AATT	4 cut(s)	7, 87, 161, 284
SsiI	CCGC	6 cut(s)	493, 633, 636, 686, 689, 738
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	121, 372, 754
StyI	CCWWGG	2 cut(s)	378, 471
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	117, 265
TasI	AATT	4 cut(s)	7, 87, 161, 284
TauI	GCSGC	2 cut(s)	636, 689
Tru1I	TTAA	2 cut(s)	428, 483
Tru9I	TTAA	2 cut(s)	428, 483
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	6 cut(s)	139, 392, 404, 458, 476, 545
TspDTI	ATGAA	3 cut(s)	174, 203, 297
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.