AT1G19150

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017128
Physical Location & Seq
Forward (+)
6612630 .. 6613972
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19150.1

Sequence Viewer

Length: 813 bp
ATGGCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCCACGAGCAGAGTCCAAAATCCTACCCAGAGAAGACCACATGTAGCGTCCACATCATCCACCGGTGGAAGATTAATGAGAGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCGTCTGTGAACCACTTCCTCCGGACCGTCCTTTATGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAGCTTACCTGGTGATTTCGGTTTCGATCCTCTCGGTTTAGGGTCTGATCCGGACACCCTCAAATGGTTTGCACAAGCTGAGCTTATACATAGCCGGTGGGCAATGCTGGCCGTGACCGGTATCATAATACCAGAATGTCTCGAGCGGTTAGGTTTCATTGAAAATTTCTCATGGTATGACGCAGGGTCTCGTGAGTACTTCGCGGATTCCACTACGCTGTTTGTGGCTCAAATGGTTTTAATGGGCTGGGCAGAAGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTTGACATAGAACCAAAGTACCCGCATAAAGTAAATCCTAAACCGGATGTTGGTTACCCTGGAGGTTTGTGGTTCGATTTTATGATGTGGGGGAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAAAGAGATTAAGAACGGACGGCTCGCGATGCTTGCTTTCCTTGGGTTCTGTTTCCAAGCTACCTACACTAGCCAAGATCCAATTGAGAATCTCATGGCTCATCTGGCTGATCCTGGTCATTGCAACGTCTTTTCGGCATTTACATCACATTAA

Protein Analysis

270

Amino Acids

29.94

Weight (kDa)

5.88

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 74 - 240 2.4e-51 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19150
fragaria_vesca FvH4_1g09040 FvH4_1g09040
malus_domestica MD02G1095600.v1.1
prunus_persica Prupe.7G195500_v2.0.a1
pyrus_communis pycom02g07570
rosa_chinensis RchiOBHm_Chr2g0095461
rosa_laevigata RLG00000016569
rosa_multiflora Rmu_sc0006076.1_g000012
rosa_roxburghii Rroxscaffold_2G00146320
rosa_rugosa Rorug02G0051300
rosa_samantha Rh2DG100200
rosa_wichuraiana Rw2G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 385
AccII CGCG 2 cut(s) 443, 686
AccIII TCCGGA 2 cut(s) 187, 289
AciI CCGC 3 cut(s) 385, 443, 554
AclWI GGATC 4 cut(s) 260, 281, 731, 764
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 2 cut(s) 437, 551
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 303, 581
AflIII ACRYGT 1 cut(s) 85
AgeI ACCGGT 3 cut(s) 107, 356, 640
AgsI TTSAA 1 cut(s) 401
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 4 cut(s) 208, 247, 589, 772
AluBI AGCT 5 cut(s) 216, 243, 317, 322, 719
AluI AGCT 5 cut(s) 216, 243, 317, 322, 719
Alw26I GTCTC 2 cut(s) 383, 432
AlwI GGATC 4 cut(s) 260, 281, 731, 764
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 2 cut(s) 187, 289
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 403
AseI ATTAAT 1 cut(s) 119
AsiGI ACCGGT 3 cut(s) 107, 356, 640
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 190
BaeI ACNNNNGTAYC 2 cut(s) 533, 566
BauI CACGAG 2 cut(s) 49, 429
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 252
BccI CCATC 2 cut(s) 230, 498
BceAI ACGGC 2 cut(s) 335, 695
BciT130I CCWGG 4 cut(s) 210, 249, 591, 774
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 383, 432
BfaI CTAG 2 cut(s) 165, 729
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 242
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 5 cut(s) 210, 249, 525, 591, 774
Bme18I GGWCC 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 5 cut(s) 210, 249, 525, 591, 774
BmsI GCATC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 208, 524, 589, 700
BsaWI WCCGGW 6 cut(s) 107, 187, 289, 356, 574, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 581
Bse118I RCCGGY 5 cut(s) 107, 149, 333, 356, 640
Bse3DI GCAATG 3 cut(s) 12, 348, 778
BseAI TCCGGA 2 cut(s) 187, 289
BseBI CCWGG 4 cut(s) 210, 249, 591, 774
BseDI CCNNGG 4 cut(s) 208, 524, 589, 700
BseGI GGATG 2 cut(s) 101, 583
BseLI CCNNNNNNNGG 2 cut(s) 303, 581
BseMI GCAATG 3 cut(s) 12, 348, 778
BseMII CTCAG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 486
Bsh1236I CGCG 2 cut(s) 443, 686
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 3 cut(s) 107, 356, 640
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 9 cut(s) 108, 150, 188, 290, 334, 357, 524, 575, 641
BslI CCNNNNNNNGG 2 cut(s) 303, 581
BsmAI GTCTC 2 cut(s) 383, 432
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 432
BsoBI CYCGRG 1 cut(s) 380
Bsp13I TCCGGA 2 cut(s) 187, 289
Bsp143I GATC 4 cut(s) 265, 286, 736, 769
Bsp1720I GCTNAGC 1 cut(s) 318
Bsp68I TCGCGA 1 cut(s) 686
BspACI CCGC 3 cut(s) 385, 443, 554
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 2 cut(s) 187, 289
BspFNI CGCG 2 cut(s) 443, 686
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 4 cut(s) 260, 281, 731, 764
BspTNI GGTCTC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 385
BsrDI GCAATG 3 cut(s) 12, 348, 778
BsrFI RCCGGY 5 cut(s) 107, 149, 333, 356, 640
BssAI RCCGGY 5 cut(s) 107, 149, 333, 356, 640
BssECI CCNNGG 4 cut(s) 208, 524, 589, 700
BssMI GATC 4 cut(s) 265, 286, 736, 769
BssSI CACGAG 2 cut(s) 49, 429
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 2 cut(s) 49, 429
Bst2UI CCWGG 4 cut(s) 210, 249, 591, 774
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 4 cut(s) 151, 348, 684, 693
BstDEI CTNAG 1 cut(s) 318
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 2 cut(s) 101, 583
BstFNI CGCG 2 cut(s) 443, 686
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 4 cut(s) 268, 289, 739, 772
BstMAI GTCTC 2 cut(s) 383, 432
BstMBI GATC 4 cut(s) 265, 286, 736, 769
BstMWI GCNNNNNNNGC 4 cut(s) 347, 688, 692, 764
BstNI CCWGG 4 cut(s) 210, 249, 591, 774
BstNSI RCATGY 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 584
BstSCI CCNGG 5 cut(s) 208, 247, 523, 589, 772
BstUI CGCG 2 cut(s) 443, 686
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 736
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 2 cut(s) 101, 583
BtuMI TCGCGA 1 cut(s) 686
Cac8I GCNNGC 4 cut(s) 151, 348, 684, 693
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 5 cut(s) 107, 149, 333, 356, 640
Cfr13I GGNCC 1 cut(s) 190
CpoI CGGWCCG 1 cut(s) 190
CseI GACGC 3 cut(s) 81, 157, 428
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 2 cut(s) 436, 550
CspAI ACCGGT 3 cut(s) 107, 356, 640
CspI CGGWCCG 1 cut(s) 190
CviAII CATG 3 cut(s) 86, 411, 754
CviQI GTAC 2 cut(s) 436, 550
DdeI CTNAG 1 cut(s) 318
DpnI GATC 4 cut(s) 267, 288, 738, 771
DpnII GATC 4 cut(s) 265, 286, 736, 769
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 700
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
EcoRII CCWGG 4 cut(s) 208, 247, 589, 772
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 3 cut(s) 89, 414, 757
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 3 cut(s) 85, 410, 753
FauI CCCGC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 2 cut(s) 88, 590
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 2 cut(s) 165, 729
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 350
HapII CCGG 9 cut(s) 108, 150, 188, 290, 334, 357, 524, 575, 641
HgaI GACGC 3 cut(s) 81, 157, 428
HhaI GCGC 1 cut(s) 132
Hin1II CATG 3 cut(s) 89, 414, 757
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 3 cut(s) 57, 446, 748
HpaII CCGG 9 cut(s) 108, 150, 188, 290, 334, 357, 524, 575, 641
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 96, 176, 535
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 6 cut(s) 188, 290, 380, 431, 635, 685
Hpy8I GTNNAC 3 cut(s) 96, 176, 535
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 2 cut(s) 311, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 688, 692, 764
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 786
Hsp92II CATG 3 cut(s) 89, 414, 757
HspAI GCGC 1 cut(s) 130
Kpn2I TCCGGA 2 cut(s) 187, 289
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 265, 286, 736, 769
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 678
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 2 cut(s) 165, 729
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 352, 584
MalI GATC 4 cut(s) 267, 288, 738, 771
MbiI CCGCTC 1 cut(s) 385
MboI GATC 4 cut(s) 265, 286, 736, 769
MboII GAAGA 3 cut(s) 90, 126, 513
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 736
MluCI AATT 2 cut(s) 403, 741
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 6 cut(s) 195, 279, 308, 587, 620, 648
MroI TCCGGA 2 cut(s) 187, 289
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 5 cut(s) 119, 479, 519, 669, 811
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 9 cut(s) 108, 150, 188, 290, 334, 357, 524, 575, 641
MspR9I CCNGG 5 cut(s) 210, 249, 525, 591, 774
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 4 cut(s) 210, 249, 591, 774
MvnI CGCG 2 cut(s) 443, 686
MwoI GCNNNNNNNGC 4 cut(s) 347, 688, 692, 764
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 525
NdeII GATC 4 cut(s) 265, 286, 736, 769
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 3 cut(s) 89, 414, 757
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 686
NspI RCATGY 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 380
PciI ACATGT 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 446, 748
PinAI ACCGGT 3 cut(s) 107, 356, 640
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PscI ACATGT 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 119
Psp6I CCWGG 4 cut(s) 208, 247, 589, 772
PspEI GGTNACC 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 4 cut(s) 208, 247, 589, 772
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 736
RruI TCGCGA 1 cut(s) 686
RsaI GTAC 2 cut(s) 437, 551
RsaNI GTAC 2 cut(s) 436, 550
RseI CAYNNNNRTG 1 cut(s) 226
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SaqAI TTAA 5 cut(s) 119, 479, 519, 669, 811
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 4 cut(s) 265, 286, 736, 769
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 5 cut(s) 210, 249, 525, 591, 774
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 1 cut(s) 678
Sfr274I CTCGAG 1 cut(s) 380
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 2 cut(s) 403, 741
SsiI CCGC 3 cut(s) 385, 443, 554
SspMI CTAG 2 cut(s) 165, 729
StyD4I CCNGG 5 cut(s) 208, 247, 523, 589, 772
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 789
TaqI TCGA 4 cut(s) 234, 264, 381, 606
TasI AATT 2 cut(s) 403, 741
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 2 cut(s) 446, 748
Tru1I TTAA 5 cut(s) 119, 479, 519, 669, 811
Tru9I TTAA 5 cut(s) 119, 479, 519, 669, 811
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 385
TspGWI ACGGA 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 190
VspI ATTAAT 1 cut(s) 119
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 165, 729
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.