Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Reverse (-)

7324351 .. 7326553

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCTTGGCCATTGCCTCTTCTGCTCTCTCAAGCTTCCCAACCAGGGAAGTGCCTTGGAAATATTCCCCAGGATTAAGAGTCACAACATGTATGCTAGGGAGAAATAGTACACGTGTTGGAGCAAGCAAAGGGGTGTCAAGTGTTTGTGAACCACTCCCTCCAGATAGACCATTGTGGTTTCCTGGTAGTTCACCTCCTGAGTGGCTTGATGGCAGCCTTCCCGGTGATTTTGGCTTCGACCCCCTTGGATTAGGGTCTGATCCAGAATTACTAAAATGGTTTGCACAAGCTGAACTGATGCATGGCAGATGGGCAATGCTTGCAGTAGCAGGAATTCTGATTCCAGAGTGGCTTGAAAGACTAGGCTTCCTAGAGAACTTCTCATGGTTTGAGGCAGGTGAAAGAGAATACTTTGCAGACCCAACAACCTTGTTTTTGGTGCAATTAGCACTAATGGGTTGGGTTGAAGGTAGAAGATGGGCAGATATGCTTAATCCTGGGAGTGTTTCCATTGAGCCTAAAATGCCTCATAAAAAGATCCCCAAGGCAGATGTCGGGTACCCGGGTGGGCTCTTTTTTGACCCGATCATGTGGGGAAGAGGATCTCCTGAGCCTGTGATGGTGTTGAGAACAAAGGAGATCAAGAATGGGCGTCTTGCAATGTTGGCCTTTGTAGGGTTCTTGTTCCAAGCCATTTACACTGGGAAAGACCCCATTGAGAACTTGATGGATCATCTTGCAGATCCTGGTCACGTTAACGTATTTTCGGCTTTCACTTCACAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

263

Amino Acids

29.15

Weight (kDa)

5.45

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 232	6.1e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	561
AclWI	GGATC	5 cut(s)	257, 535, 613, 740, 741
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	2 cut(s)	112, 563
AfiI	CCNNNNNNNGG	2 cut(s)	46, 678
AflIII	ACRYGT	3 cut(s)	89, 113, 115
AgsI	TTSAA	2 cut(s)	359, 470
AjnI	CCWGG	5 cut(s)	44, 70, 184, 499, 748
AluBI	AGCT	2 cut(s)	36, 293
AluI	AGCT	2 cut(s)	36, 293
AlwI	GGATC	5 cut(s)	257, 535, 613, 740, 741
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	3 cut(s)	3, 9, 669
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	561
AsuC2I	CCSGG	3 cut(s)	225, 566, 567
AsuHPI	GGTGA	3 cut(s)	186, 239, 413
AvaI	CYCGRG	1 cut(s)	565
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	576
BbrPI	CACGTG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	5 cut(s)	206, 306, 474, 616, 724
BciT130I	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BcnI	CCSGG	3 cut(s)	225, 566, 567
BfaI	CTAG	4 cut(s)	98, 365, 374, 790
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	8 cut(s)	46, 72, 186, 225, 501, 566, 567, 750
BmeT110I	CYCGRG	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	8 cut(s)	46, 72, 186, 225, 501, 566, 567, 750
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	3 cut(s)	225, 566, 567
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 678
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	3 cut(s)	12, 324, 669
BseBI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BseDI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BseLI	CCNNNNNNNGG	2 cut(s)	46, 678
BseMI	GCAATG	3 cut(s)	12, 324, 669
BseMII	CTCAG	2 cut(s)	192, 603
BseNI	ACTGG	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	3 cut(s)	5, 11, 671
BshNI	GGYRCC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	225, 566
BslI	CCNNNNNNNGG	2 cut(s)	46, 678
BsnI	GGCC	3 cut(s)	5, 11, 671
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
BspANI	GGCC	3 cut(s)	5, 11, 671
BspCNI	CTCAG	2 cut(s)	193, 604
BspLI	GGNNCC	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	5 cut(s)	257, 535, 613, 740, 741
BspT107I	GGYRCC	1 cut(s)	561
BsrDI	GCAATG	3 cut(s)	12, 324, 669
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BssMI	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	4 cut(s)	6, 56, 247, 546
Bst2UI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
Bst6I	CTCTTC	2 cut(s)	25, 595
BstACI	GRCGYC	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	127, 324
BstDEI	CTNAG	2 cut(s)	201, 612
BstKTI	GATC	7 cut(s)	265, 543, 591, 608, 645, 736, 748
BstMBI	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
BstNI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	8 cut(s)	44, 70, 184, 223, 499, 564, 565, 748
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	3 cut(s)	540, 605, 745
BstYI	RGATCY	3 cut(s)	540, 605, 745
BsuRI	GGCC	3 cut(s)	5, 11, 671
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	127, 324
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr9I	CCCGGG	1 cut(s)	565
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	2 cut(s)	111, 562
CviAII	CATG	4 cut(s)	90, 305, 387, 592
CviQI	GTAC	2 cut(s)	111, 562
DdeI	CTNAG	2 cut(s)	201, 612
DpnI	GATC	7 cut(s)	264, 542, 590, 607, 644, 735, 747
DpnII	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	25, 595
EarI	CTCTTC	2 cut(s)	25, 595
Eco130I	CCWWGG	4 cut(s)	6, 56, 247, 546
Eco24I	GRGCYC	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	5 cut(s)	44, 70, 184, 499, 748
EcoT14I	CCWWGG	4 cut(s)	6, 56, 247, 546
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	4 cut(s)	6, 56, 247, 546
FaeI	CATG	4 cut(s)	93, 308, 390, 595
FaiI	YATR	7 cut(s)	91, 95, 306, 388, 491, 534, 593
FatI	CATG	4 cut(s)	89, 304, 386, 591
Fnu4HI	GCNGC	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	4 cut(s)	98, 365, 374, 790
GluI	GCNGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	5, 11, 671
HapII	CCGG	2 cut(s)	225, 566
HgaI	GACGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	93, 308, 390, 595
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	81, 343
HpaI	GTTAAC	1 cut(s)	760
HpaII	CCGG	2 cut(s)	225, 566
HphI	GGTGA	3 cut(s)	186, 239, 413
Hpy166II	GTNNAC	4 cut(s)	113, 152, 194, 760
Hpy188I	TCNGA	2 cut(s)	262, 342
Hpy188III	TCNNGA	6 cut(s)	164, 200, 266, 347, 611, 646
Hpy8I	GTNNAC	4 cut(s)	113, 152, 194, 760
HpyAV	CCTTC	2 cut(s)	230, 464
HpyCH4IV	ACGT	3 cut(s)	115, 756, 762
HpyCH4V	TGCA	7 cut(s)	287, 304, 326, 419, 445, 662, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
HpyF3I	CTNAG	2 cut(s)	201, 612
HpySE526I	ACGT	3 cut(s)	115, 756, 762
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	4 cut(s)	93, 308, 390, 595
KpnI	GGTACC	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	760
Kzo9I	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	4 cut(s)	98, 365, 374, 790
MaeII	ACGT	3 cut(s)	115, 756, 762
MaeIII	GTNAC	2 cut(s)	82, 752
MalI	GATC	7 cut(s)	264, 542, 590, 607, 644, 735, 747
MboI	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
MboII	GAAGA	3 cut(s)	12, 489, 612
MflI	RGATCY	3 cut(s)	540, 605, 745
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	269, 336, 446
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	28, 171, 207, 388, 540, 596
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	77, 495, 759
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	225, 566
MspR9I	CCNGG	8 cut(s)	46, 72, 186, 225, 501, 566, 567, 750
MvaI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
MwoI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
NciI	CCSGG	3 cut(s)	225, 566, 567
NdeII	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
NlaIII	CATG	4 cut(s)	93, 308, 390, 595
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	2 cut(s)	82, 752
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	89
Psp6I	CCWGG	5 cut(s)	44, 70, 184, 499, 748
PspCI	CACGTG	1 cut(s)	116
PspGI	CCWGG	5 cut(s)	44, 70, 184, 499, 748
PspN4I	GGNNCC	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	3 cut(s)	540, 605, 745
RsaI	GTAC	2 cut(s)	112, 563
RsaNI	GTAC	2 cut(s)	111, 562
SaqAI	TTAA	3 cut(s)	77, 495, 759
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	7 cut(s)	262, 540, 588, 605, 642, 733, 745
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	8 cut(s)	46, 72, 186, 225, 501, 566, 567, 750
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	9 cut(s)	38, 118, 199, 295, 403, 434, 475, 759, 765
SfaNI	GCATC	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	269, 336, 446
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	4 cut(s)	98, 365, 374, 790
StyD4I	CCNGG	8 cut(s)	44, 70, 184, 223, 499, 564, 565, 748
StyI	CCWWGG	4 cut(s)	6, 56, 247, 546
TaiI	ACGT	3 cut(s)	118, 759, 765
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	269, 336, 446
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	77, 495, 759
Tru9I	TTAA	3 cut(s)	77, 495, 759
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	2 cut(s)	82, 752
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	2 cut(s)	82, 752
TspMI	CCCGGG	1 cut(s)	565
TspRI	CASTG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	93
XmaI	CCCGGG	1 cut(s)	565
XspI	CTAG	4 cut(s)	98, 365, 374, 790
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.