Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Reverse (-)

7545569 .. 7547316

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1095600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCTTGGCCATTGCCTCTTCTGCAATTTCAAGCATTATTCCAACCAGGGAAGTGCCTTGGAAATTTTCCTCTGGAAAAGTAGTCACAACATGCTTGCTGGGAAGAACAACCGCAGCCACCCGTTTACATGCAACAAAAGGAGGAGTCTCAAGTGTATGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGCAGCTCACCTCCTGAATGGCTTGATGGCAGCCTTCCTGGTGATTTTGGCTTTGACCCCCTTGGATTAGGGTCTGATCCAGAATTACTAAAATGGAATGCACAAGCTGAGCTGATGCATGGCAGATGGGCAATGCTGGCAGTGGCTGGAATTCTAATTCCAGAGTGGCTTGAAAGATTAGGCTTCATAGAGAACTTCTCATGGTTTGAGGCTGGTGAGAGAGAGTACTTTGCAGACCCAACAACCTTGTTTGTGGTACAATTAGCATTAATGGGGTGGGTTGAGGGAAGGAGATGGGCTGACATAATTAACCCTGGAAGTGTTGACATTGAGCCTAAGTTTCCCAACAAAAAGAACCCTAAACCAGATGTAGGGTACCCCGGTGGGCTCTGGTTTGATCCCATGATGTGGGGAAGAGGGTCTCCTGAGCCTGTCATGGTTTTGAGAACAAAGGAGATTAAAAACGGGCGTCTTGCGATGCTCGCTTTCGTAGGGTTCTTGTTTCAAGCCCTTTATACAGGGAAAGATCCCATTGACAATTTGATGGCTCATATTGCAGATCCTGGCCACTGCAACGTATTTTCGGCTTTCACTTCTCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

268

Amino Acids

29.44

Weight (kDa)

5.44

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	70 - 236	1.1e-52	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AccB7I	CCANNNNNTGG	1 cut(s)	606
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	4 cut(s)	269, 590, 719, 752
AcoI	YGGCCR	2 cut(s)	9, 763
AcsI	RAATTY	2 cut(s)	65, 348
AcyI	GRCGYC	1 cut(s)	667
AfaI	GTAC	3 cut(s)	425, 456, 575
AfiI	CCNNNNNNNGG	2 cut(s)	569, 606
AgsI	TTSAA	3 cut(s)	33, 371, 704
AjnI	CCWGG	5 cut(s)	47, 196, 235, 511, 760
AluBI	AGCT	3 cut(s)	204, 305, 310
AluI	AGCT	3 cut(s)	204, 305, 310
Alw26I	GTCTC	2 cut(s)	154, 624
AlwI	GGATC	4 cut(s)	269, 590, 719, 752
AlwNI	CAGNNNCTG	2 cut(s)	344, 761
AoxI	GGCC	4 cut(s)	3, 9, 182, 763
ApeKI	GCWGC	3 cut(s)	116, 201, 228
ApoI	RAATTY	2 cut(s)	65, 348
AseI	ATTAAT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	168
Asp718I	GGTACC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	3 cut(s)	198, 251, 425
BaeI	ACNNNNGTAYC	2 cut(s)	565, 598
BalI	TGGCCA	2 cut(s)	11, 765
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	128, 213, 240
BccI	CCATC	4 cut(s)	218, 318, 486, 736
BciT130I	CCWGG	5 cut(s)	49, 198, 237, 513, 762
BcnI	CCSGG	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	154, 624
BisI	GCNGC	3 cut(s)	117, 202, 229
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	118, 203, 230
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	6 cut(s)	49, 198, 237, 513, 579, 762
BmiI	GGNNCC	2 cut(s)	194, 575
BmrFI	CCNGG	6 cut(s)	49, 198, 237, 513, 579, 762
BmsI	GCATC	2 cut(s)	303, 666
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	7 cut(s)	6, 48, 59, 196, 259, 511, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 606
Bse3DI	GCAATG	2 cut(s)	12, 336
BseBI	CCWGG	5 cut(s)	49, 198, 237, 513, 762
BseDI	CCNNGG	7 cut(s)	6, 48, 59, 196, 259, 511, 577
BseLI	CCNNNNNNNGG	2 cut(s)	569, 606
BseMI	GCAATG	2 cut(s)	12, 336
BseMII	CTCAG	2 cut(s)	297, 615
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	128, 213, 240
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	4 cut(s)	5, 11, 184, 765
BshNI	GGYRCC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	569, 606
BsmAI	GTCTC	2 cut(s)	154, 624
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	5, 11, 184, 765
Bso31I	GGTCTC	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	274, 595, 724, 757
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	4 cut(s)	5, 11, 184, 765
BspCNI	CTCAG	2 cut(s)	298, 616
BspLI	GGNNCC	2 cut(s)	194, 575
BspPI	GGATC	4 cut(s)	269, 590, 719, 752
BspT107I	GGYRCC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	2 cut(s)	12, 336
BssECI	CCNNGG	7 cut(s)	6, 48, 59, 196, 259, 511, 577
BssMI	GATC	4 cut(s)	274, 595, 724, 757
BssNI	GRCGYC	1 cut(s)	667
BssT1I	CCWWGG	3 cut(s)	6, 59, 259
Bst2UI	CCWGG	5 cut(s)	49, 198, 237, 513, 762
Bst6I	CTCTTC	2 cut(s)	25, 607
BstACI	GRCGYC	1 cut(s)	667
BstC8I	GCNNGC	3 cut(s)	98, 336, 681
BstDEI	CTNAG	4 cut(s)	306, 534, 624, 795
BstKTI	GATC	4 cut(s)	277, 598, 727, 760
BstMAI	GTCTC	2 cut(s)	154, 624
BstMBI	GATC	4 cut(s)	274, 595, 724, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 335, 680, 752
BstNI	CCWGG	5 cut(s)	49, 198, 237, 513, 762
BstNSI	RCATGY	2 cut(s)	96, 134
BstSCI	CCNGG	6 cut(s)	47, 196, 235, 511, 577, 760
BstV1I	GCAGC	3 cut(s)	128, 213, 240
BstX2I	RGATCY	2 cut(s)	724, 757
BstYI	RGATCY	2 cut(s)	724, 757
BsuRI	GGCC	4 cut(s)	5, 11, 184, 765
BtgZI	GCGATG	1 cut(s)	689
BtsI	GCAGTG	2 cut(s)	345, 766
BtsIMutI	CAGTG	2 cut(s)	345, 766
Cac8I	GCNNGC	3 cut(s)	98, 336, 681
CaiI	CAGNNNCTG	2 cut(s)	344, 761
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	424, 455, 574
CviAII	CATG	6 cut(s)	93, 131, 317, 399, 601, 634
CviQI	GTAC	3 cut(s)	424, 455, 574
DdeI	CTNAG	4 cut(s)	306, 534, 624, 795
DpnI	GATC	4 cut(s)	276, 597, 726, 759
DpnII	GATC	4 cut(s)	274, 595, 724, 757
EaeI	YGGCCR	2 cut(s)	9, 763
Eam1104I	CTCTTC	2 cut(s)	25, 607
EarI	CTCTTC	2 cut(s)	25, 607
Eco130I	CCWWGG	3 cut(s)	6, 59, 259
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	5 cut(s)	47, 196, 235, 511, 760
EcoT14I	CCWWGG	3 cut(s)	6, 59, 259
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	3 cut(s)	6, 59, 259
FaeI	CATG	6 cut(s)	96, 134, 320, 402, 604, 637
FatI	CATG	6 cut(s)	92, 130, 316, 398, 600, 633
Fnu4HI	GCNGC	3 cut(s)	117, 202, 229
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	3 cut(s)	117, 202, 229
GluI	GCNGC	3 cut(s)	117, 202, 229
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	5, 11, 184, 765
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	1 cut(s)	656
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	6 cut(s)	96, 134, 320, 402, 604, 637
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	3 cut(s)	198, 251, 425
Hpy166II	GTNNAC	3 cut(s)	128, 164, 523
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	6 cut(s)	75, 176, 212, 278, 359, 623
Hpy8I	GTNNAC	3 cut(s)	128, 164, 523
HpyAV	CCTTC	2 cut(s)	242, 480
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	7 cut(s)	26, 134, 299, 316, 431, 755, 771
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 335, 680, 752
HpyF3I	CTNAG	4 cut(s)	306, 534, 624, 795
HpySE526I	ACGT	1 cut(s)	774
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	6 cut(s)	96, 134, 320, 402, 604, 637
KpnI	GGTACC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	274, 595, 724, 757
Lsp1109I	GCAGC	3 cut(s)	128, 213, 240
LweI	GCATC	2 cut(s)	303, 666
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	276, 597, 726, 759
MboI	GATC	4 cut(s)	274, 595, 724, 757
MboII	GAAGA	3 cut(s)	12, 117, 624
MflI	RGATCY	2 cut(s)	724, 757
MhlI	GDGCHC	1 cut(s)	588
MlsI	TGGCCA	2 cut(s)	11, 765
MluCI	AATT	8 cut(s)	27, 65, 281, 348, 354, 458, 504, 736
MluNI	TGGCCA	2 cut(s)	11, 765
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	8 cut(s)	28, 82, 137, 183, 219, 400, 475, 608
Mox20I	TGGCCA	2 cut(s)	11, 765
Mph1103I	ATGCAT	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	2 cut(s)	11, 765
MseI	TTAA	3 cut(s)	467, 507, 657
Msp20I	TGGCCA	2 cut(s)	11, 765
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	6 cut(s)	49, 198, 237, 513, 579, 762
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	5 cut(s)	49, 198, 237, 513, 762
MwoI	GCNNNNNNNGC	4 cut(s)	23, 335, 680, 752
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	4 cut(s)	274, 595, 724, 757
NlaIII	CATG	6 cut(s)	96, 134, 320, 402, 604, 637
NlaIV	GGNNCC	2 cut(s)	194, 575
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	2 cut(s)	96, 134
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	606
PkrI	GCNGC	3 cut(s)	118, 203, 230
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	467
Psp6I	CCWGG	5 cut(s)	47, 196, 235, 511, 760
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	5 cut(s)	47, 196, 235, 511, 760
PspN4I	GGNNCC	2 cut(s)	194, 575
PstNI	CAGNNNCTG	2 cut(s)	344, 761
PsuI	RGATCY	2 cut(s)	724, 757
RsaI	GTAC	3 cut(s)	425, 456, 575
RsaNI	GTAC	3 cut(s)	424, 455, 574
SaqAI	TTAA	3 cut(s)	467, 507, 657
SatI	GCNGC	3 cut(s)	117, 202, 229
Sau3AI	GATC	4 cut(s)	274, 595, 724, 757
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	6 cut(s)	49, 198, 237, 513, 579, 762
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	6 cut(s)	206, 211, 307, 312, 446, 777
SfaNI	GCATC	2 cut(s)	303, 666
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	8 cut(s)	27, 65, 281, 348, 354, 458, 504, 736
SsiI	CCGC	1 cut(s)	114
StyD4I	CCNGG	6 cut(s)	47, 196, 235, 511, 577, 760
StyI	CCWWGG	3 cut(s)	6, 59, 259
TaiI	ACGT	1 cut(s)	777
TasI	AATT	8 cut(s)	27, 65, 281, 348, 354, 458, 504, 736
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	467, 507, 657
Tru9I	TTAA	3 cut(s)	467, 507, 657
TscAI	CASTG	2 cut(s)	345, 773
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	116, 201, 228
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	345, 773
Van91I	CCANNNNNTGG	1 cut(s)	606
VspI	ATTAAT	1 cut(s)	467
XapI	RAATTY	2 cut(s)	65, 348
XceI	RCATGY	2 cut(s)	96, 134
XmnI	GAANNNNTTC	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.