Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006076.1

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Forward (+)

55211 .. 58174

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006076.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggggtgcccagaattgggtgaggtgttagtgttggtgagcagagtctggtggatttggtttatgaaatgggggagtttgagtgcatttcaagggaaggctgctaagctcagccaagcacgaaatcaaagtctccaactttgggcatttttgatttacctcagtgatgcaagtgactgttcaacaggaggtgtagaaacagtgtcacacagtctggaagttgaagccttttccaaaggctcaaagcgatcaattatggccttggccattgcctcttctgctctctcaagcttcccaaccagggaagtgccttggaaatattccccaggattaagagtcacaacatgtatgctagggagaaatagtacacgtgttggagcaagcaaaggggtgtcaagtgtttgtgaaccactccctccagatagaccattgtggtttcctggtagttcacctcctgagtggcttgatggcagccttcccggtgattttggcttcgacccccttggattagggtctgatccagaattactaaaatggtttgcacaagctgaactgatgcatggcagatgggcaatgcttgcagtagcaggaattctgattccagagtggcttgaaagactaggcttcctagagaacttctcatggtttgaggcaggtgaaagagaatactttgcagacccaacaaccttgtttttggtgcaattagcactaatgggttgggttgaaggtagaagatgggcagatatgcttaatcctgggagtgtttccattgagcctaaaatgcctcataaaaagatccccaaggcagatgtcgggtacccgggtgggctcttttttgacccgatcatgtggggaagaggatctcctgagcctgtgatggtgttgagaacaaaggagatcaagaatgggcgtcttgcaatgttggcctttgtagggttcttgttccaagccatttacactgggaaagaccccattgagaacttgatggatcatcttgcagatcctggtcacgttaacgtattttcggctttcacttcacaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

348

Amino Acids

38.54

Weight (kDa)

5.82

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	644
Acc65I	GGTACC	1 cut(s)	816
AccB1I	GGYRCC	2 cut(s)	6, 816
AclWI	GGATC	5 cut(s)	512, 790, 868, 995, 996
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	591
AcvI	CACGTG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	910
AfaI	GTAC	2 cut(s)	367, 818
AfiI	CCNNNNNNNGG	5 cut(s)	16, 17, 142, 301, 933
AflIII	ACRYGT	3 cut(s)	344, 368, 370
AgsI	TTSAA	5 cut(s)	92, 183, 224, 614, 725
AjnI	CCWGG	5 cut(s)	299, 325, 439, 754, 1003
AluBI	AGCT	3 cut(s)	109, 291, 548
AluI	AGCT	3 cut(s)	109, 291, 548
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	5 cut(s)	512, 790, 868, 995, 996
AlwNI	CAGNNNCTG	2 cut(s)	48, 1004
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	3 cut(s)	258, 264, 924
ApeKI	GCWGC	2 cut(s)	101, 471
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp718I	GGTACC	1 cut(s)	816
AsuC2I	CCSGG	3 cut(s)	480, 821, 822
AsuHPI	GGTGA	5 cut(s)	32, 49, 441, 494, 668
AvaI	CYCGRG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	808, 841
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	6, 816
BanII	GRGCYC	1 cut(s)	831
BbrPI	CACGTG	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	88, 483
BccI	CCATC	5 cut(s)	461, 561, 729, 871, 979
BciT130I	CCWGG	5 cut(s)	301, 327, 441, 756, 1005
BcnI	CCSGG	3 cut(s)	480, 821, 822
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	4 cut(s)	353, 620, 629, 1045
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	2 cut(s)	102, 472
BlpI	GCTNAGC	2 cut(s)	105, 110
BlsI	GCNGC	2 cut(s)	103, 473
Bme1390I	CCNGG	8 cut(s)	301, 327, 441, 480, 756, 821, 822, 1005
BmeT110I	CYCGRG	1 cut(s)	820
BmiI	GGNNCC	2 cut(s)	8, 818
BmrFI	CCNGG	8 cut(s)	301, 327, 441, 480, 756, 821, 822, 1005
BmrI	ACTGGG	1 cut(s)	969
BmsI	GCATC	2 cut(s)	157, 546
BmuI	ACTGGG	1 cut(s)	969
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu1102I	GCTNAGC	2 cut(s)	105, 110
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	3 cut(s)	480, 821, 822
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	910
BsaJI	CCNNGG	8 cut(s)	261, 300, 311, 325, 502, 755, 801, 820
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 349, 379
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 17, 142, 301, 933
Bse1I	ACTGG	1 cut(s)	964
Bse3DI	GCAATG	3 cut(s)	267, 579, 924
BseBI	CCWGG	5 cut(s)	301, 327, 441, 756, 1005
BseDI	CCNNGG	8 cut(s)	261, 300, 311, 325, 502, 755, 801, 820
BseLI	CCNNNNNNNGG	5 cut(s)	16, 17, 142, 301, 933
BseMI	GCAATG	3 cut(s)	267, 579, 924
BseMII	CTCAG	4 cut(s)	124, 175, 447, 858
BseNI	ACTGG	1 cut(s)	964
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	88, 483
BshFI	GGCC	3 cut(s)	260, 266, 926
BshNI	GGYRCC	2 cut(s)	6, 816
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	480, 821
BslI	CCNNNNNNNGG	5 cut(s)	16, 17, 142, 301, 933
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	260, 266, 926
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	11, 831
Bsp143I	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
Bsp1720I	GCTNAGC	2 cut(s)	105, 110
BspANI	GGCC	3 cut(s)	260, 266, 926
BspCNI	CTCAG	4 cut(s)	123, 174, 448, 859
BspLI	GGNNCC	2 cut(s)	8, 818
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	5 cut(s)	512, 790, 868, 995, 996
BspT107I	GGYRCC	2 cut(s)	6, 816
BsrDI	GCAATG	3 cut(s)	267, 579, 924
BsrI	ACTGG	1 cut(s)	964
BssECI	CCNNGG	8 cut(s)	261, 300, 311, 325, 502, 755, 801, 820
BssMI	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
BssNI	GRCGYC	1 cut(s)	910
BssT1I	CCWWGG	4 cut(s)	261, 311, 502, 801
Bst2UI	CCWGG	5 cut(s)	301, 327, 441, 756, 1005
Bst4CI	ACNGT	3 cut(s)	179, 202, 212
Bst6I	CTCTTC	2 cut(s)	280, 850
BstACI	GRCGYC	1 cut(s)	910
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	382, 579
BstDEI	CTNAG	5 cut(s)	105, 110, 161, 456, 867
BstKTI	GATC	8 cut(s)	251, 520, 798, 846, 863, 900, 991, 1003
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 578, 781, 923
BstNI	CCWGG	5 cut(s)	301, 327, 441, 756, 1005
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	8 cut(s)	299, 325, 439, 478, 754, 819, 820, 1003
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	88, 483
BstX2I	RGATCY	3 cut(s)	795, 860, 1000
BstYI	RGATCY	3 cut(s)	795, 860, 1000
BsuRI	GGCC	3 cut(s)	260, 266, 926
BtsIMutI	CAGTG	3 cut(s)	169, 207, 957
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	382, 579
CaiI	CAGNNNCTG	2 cut(s)	48, 1004
Cfr9I	CCCGGG	1 cut(s)	820
CseI	GACGC	1 cut(s)	899
Csp6I	GTAC	2 cut(s)	366, 817
CviAII	CATG	4 cut(s)	345, 560, 642, 847
CviQI	GTAC	2 cut(s)	366, 817
DdeI	CTNAG	5 cut(s)	105, 110, 161, 456, 867
DpnI	GATC	8 cut(s)	250, 519, 797, 845, 862, 899, 990, 1002
DpnII	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	280, 850
EarI	CTCTTC	2 cut(s)	280, 850
Eco130I	CCWWGG	4 cut(s)	261, 311, 502, 801
Eco24I	GRGCYC	1 cut(s)	831
Eco72I	CACGTG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	820
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	5 cut(s)	299, 325, 439, 754, 1003
EcoT14I	CCWWGG	4 cut(s)	261, 311, 502, 801
EcoT22I	ATGCAT	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	4 cut(s)	261, 311, 502, 801
FaeI	CATG	4 cut(s)	348, 563, 645, 850
FaiI	YATR	9 cut(s)	65, 257, 346, 350, 561, 643, 746, 789, 848
FatI	CATG	4 cut(s)	344, 559, 641, 846
Fnu4HI	GCNGC	2 cut(s)	102, 472
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	2 cut(s)	102, 472
FspBI	CTAG	4 cut(s)	353, 620, 629, 1045
GluI	GCNGC	2 cut(s)	102, 472
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	260, 266, 926
HapII	CCGG	2 cut(s)	480, 821
HgaI	GACGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	910
Hin1II	CATG	4 cut(s)	348, 563, 645, 850
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	3 cut(s)	45, 336, 598
HpaI	GTTAAC	1 cut(s)	1015
HpaII	CCGG	2 cut(s)	480, 821
HphI	GGTGA	5 cut(s)	32, 49, 441, 494, 668
Hpy166II	GTNNAC	4 cut(s)	368, 407, 449, 1015
Hpy188I	TCNGA	2 cut(s)	517, 597
Hpy188III	TCNNGA	7 cut(s)	215, 419, 455, 521, 602, 866, 901
Hpy8I	GTNNAC	4 cut(s)	368, 407, 449, 1015
HpyAV	CCTTC	3 cut(s)	91, 485, 719
HpyCH4III	ACNGT	3 cut(s)	179, 202, 212
HpyCH4IV	ACGT	3 cut(s)	370, 1011, 1017
HpyCH4V	TGCA	9 cut(s)	86, 170, 542, 559, 581, 674, 700, 917, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 578, 781, 923
HpyF3I	CTNAG	5 cut(s)	105, 110, 161, 456, 867
HpySE526I	ACGT	3 cut(s)	370, 1011, 1017
Hsp92I	GRCGYC	1 cut(s)	910
Hsp92II	CATG	4 cut(s)	348, 563, 645, 850
KpnI	GGTACC	1 cut(s)	820
KspAI	GTTAAC	1 cut(s)	1015
Kzo9I	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
LmnI	GCTCC	1 cut(s)	377
Lsp1109I	GCAGC	2 cut(s)	88, 483
LweI	GCATC	2 cut(s)	157, 546
MaeI	CTAG	4 cut(s)	353, 620, 629, 1045
MaeII	ACGT	3 cut(s)	370, 1011, 1017
MaeIII	GTNAC	4 cut(s)	173, 204, 337, 1007
MalI	GATC	8 cut(s)	250, 519, 797, 845, 862, 899, 990, 1002
MboI	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
MboII	GAAGA	3 cut(s)	267, 744, 867
MflI	RGATCY	3 cut(s)	795, 860, 1000
MhlI	GDGCHC	2 cut(s)	11, 831
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	14, 252, 524, 591, 701
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	54, 345
MmeI	TCCRAC	2 cut(s)	160, 355
MnlI	CCTC	9 cut(s)	16, 170, 182, 283, 426, 462, 643, 795, 851
Mox20I	TGGCCA	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	3 cut(s)	332, 750, 1014
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	480, 821
MspR9I	CCNGG	8 cut(s)	301, 327, 441, 480, 756, 821, 822, 1005
MvaI	CCWGG	5 cut(s)	301, 327, 441, 756, 1005
MwoI	GCNNNNNNNGC	4 cut(s)	278, 578, 781, 923
NciI	CCSGG	3 cut(s)	480, 821, 822
NdeII	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
NlaIII	CATG	4 cut(s)	348, 563, 645, 850
NlaIV	GGNNCC	2 cut(s)	8, 818
NmuCI	GTSAC	4 cut(s)	173, 204, 337, 1007
NsiI	ATGCAT	1 cut(s)	561
NspI	RCATGY	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	644
PciI	ACATGT	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	103, 473
PleI	GAGTC	2 cut(s)	53, 344
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	2 cut(s)	53, 344
Ppu21I	YACGTR	1 cut(s)	371
PscI	ACATGT	1 cut(s)	344
Psp6I	CCWGG	5 cut(s)	299, 325, 439, 754, 1003
PspCI	CACGTG	1 cut(s)	371
PspGI	CCWGG	5 cut(s)	299, 325, 439, 754, 1003
PspN4I	GGNNCC	2 cut(s)	8, 818
PstNI	CAGNNNCTG	2 cut(s)	48, 1004
PsuI	RGATCY	3 cut(s)	795, 860, 1000
RsaI	GTAC	2 cut(s)	367, 818
RsaNI	GTAC	2 cut(s)	366, 817
SaqAI	TTAA	3 cut(s)	332, 750, 1014
SatI	GCNGC	2 cut(s)	102, 472
Sau3AI	GATC	8 cut(s)	248, 517, 795, 843, 860, 897, 988, 1000
SchI	GAGTC	2 cut(s)	54, 345
ScrFI	CCNGG	8 cut(s)	301, 327, 441, 480, 756, 821, 822, 1005
SduI	GDGCHC	2 cut(s)	11, 831
SfaNI	GCATC	2 cut(s)	157, 546
SmaI	CCCGGG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	5 cut(s)	14, 252, 524, 591, 701
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	4 cut(s)	353, 620, 629, 1045
StyD4I	CCNGG	8 cut(s)	299, 325, 439, 478, 754, 819, 820, 1003
StyI	CCWWGG	4 cut(s)	261, 311, 502, 801
TaaI	ACNGT	3 cut(s)	179, 202, 212
TaiI	ACGT	3 cut(s)	373, 1014, 1020
TaqI	TCGA	1 cut(s)	495
TasI	AATT	5 cut(s)	14, 252, 524, 591, 701
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	3 cut(s)	332, 750, 1014
Tru9I	TTAA	3 cut(s)	332, 750, 1014
TscAI	CASTG	3 cut(s)	169, 207, 964
TseFI	GTSAC	4 cut(s)	173, 204, 337, 1007
TseI	GCWGC	2 cut(s)	101, 471
Tsp45I	GTSAC	4 cut(s)	173, 204, 337, 1007
TspDTI	ATGAA	1 cut(s)	80
TspMI	CCCGGG	1 cut(s)	820
TspRI	CASTG	3 cut(s)	169, 207, 964
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	348
XmaI	CCCGGG	1 cut(s)	820
XspI	CTAG	4 cut(s)	353, 620, 629, 1045
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.