Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Forward (+)

84249305 .. 84251353

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCTTGGCCATTGCCTCTTATGCTCTCTCAAGCTTCCCAACCAGGGAAGTGCCTTGGAAATTTTCCCCAGGATTAAGAGTCACGACATGTATGCTAGGGAGAAATAGTACACGTGTTGGAGCAAGCAAAGGGGTGTCAAGTGTTTGTGAACCACTCCCTCCAGATAGACCATTGTGGTTTCCTGGTAGTTCACCTCCTGAGTGGCTTGATGGCAGCCTTCCCGGTGATTTTGGCTTCGACCCCCTTGGATTAGGGTCTGATCCAGAGTTACTAAAATGGTTTGCACAAGCTGAACTGATGCATGGCAGATGGGCAATGCTTGCAGTAGCAGGAATTCTGATCCCAGAGTGGCTTGAAAGACTAGGCTTCCTAGAGAACTTCTCATGGTTTGAGGCAGGTGAAAGAGAATACTTTGCAGACCCAACAACCTTGTTTTTGGTGCAATTAGCACTAATGGGTTGGGTTGAAGGTAGAAGATGGGCAGATATGCTTAATCCTGGGAGCGTTTCCATTGAGCCTAAAATGCCTCATAAAAAGATCCCCAAGGCAGATGTCGGGTACCCCGGTGGGCTCTTTTTTGACCCGATCATGTGGGGAAGAGGATCTCCTGAGCCTGTGATGGTGTTGAGAACAAAGGAGATCAAGAATGGGCGTCTTGCAATGTTGGCCTTTGTAGGGTTCTTGTTCCAAGCCATTTACACTGGGAAAGACCCCATTGAGAACTTGATGGATCATCTTGCAGATCCTGGTCACGTTAACGCTTTCACTTCACAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

260

Amino Acids

28.88

Weight (kDa)

5.45

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 232	5.9e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	561
AclWI	GGATC	6 cut(s)	257, 337, 535, 613, 740, 741
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	62, 336
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	2 cut(s)	112, 563
AfiI	CCNNNNNNNGG	2 cut(s)	46, 678
AflIII	ACRYGT	3 cut(s)	89, 113, 115
AgsI	TTSAA	2 cut(s)	359, 470
AjnI	CCWGG	5 cut(s)	44, 70, 184, 499, 748
AluBI	AGCT	2 cut(s)	36, 293
AluI	AGCT	2 cut(s)	36, 293
AlwI	GGATC	6 cut(s)	257, 337, 535, 613, 740, 741
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	3 cut(s)	3, 9, 669
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	2 cut(s)	62, 336
Asp718I	GGTACC	1 cut(s)	561
AsuC2I	CCSGG	2 cut(s)	225, 567
AsuHPI	GGTGA	3 cut(s)	186, 239, 413
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	576
BbrPI	CACGTG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	5 cut(s)	206, 306, 474, 616, 724
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BcnI	CCSGG	2 cut(s)	225, 567
BfaI	CTAG	4 cut(s)	98, 365, 374, 781
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	2 cut(s)	225, 567
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 678
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	3 cut(s)	12, 324, 669
BseBI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BseDI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BseLI	CCNNNNNNNGG	2 cut(s)	46, 678
BseMI	GCAATG	3 cut(s)	12, 324, 669
BseMII	CTCAG	2 cut(s)	192, 603
BseNI	ACTGG	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	3 cut(s)	5, 11, 671
BshNI	GGYRCC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	225, 567
BslI	CCNNNNNNNGG	2 cut(s)	46, 678
BsnI	GGCC	3 cut(s)	5, 11, 671
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
BspANI	GGCC	3 cut(s)	5, 11, 671
BspCNI	CTCAG	2 cut(s)	193, 604
BspLI	GGNNCC	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	6 cut(s)	257, 337, 535, 613, 740, 741
BspT107I	GGYRCC	1 cut(s)	561
BsrDI	GCAATG	3 cut(s)	12, 324, 669
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	8 cut(s)	6, 45, 56, 70, 247, 500, 546, 565
BssMI	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	4 cut(s)	6, 56, 247, 546
Bst2UI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
Bst6I	CTCTTC	1 cut(s)	595
BstACI	GRCGYC	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	127, 324
BstDEI	CTNAG	2 cut(s)	201, 612
BstKTI	GATC	8 cut(s)	265, 345, 543, 591, 608, 645, 736, 748
BstMBI	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
BstNI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	7 cut(s)	44, 70, 184, 223, 499, 565, 748
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	3 cut(s)	540, 605, 745
BstYI	RGATCY	3 cut(s)	540, 605, 745
BsuRI	GGCC	3 cut(s)	5, 11, 671
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	127, 324
CaiI	CAGNNNCTG	1 cut(s)	749
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	2 cut(s)	111, 562
CviAII	CATG	4 cut(s)	90, 305, 387, 592
CviQI	GTAC	2 cut(s)	111, 562
DdeI	CTNAG	2 cut(s)	201, 612
DpnI	GATC	8 cut(s)	264, 344, 542, 590, 607, 644, 735, 747
DpnII	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	4 cut(s)	6, 56, 247, 546
Eco24I	GRGCYC	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	5 cut(s)	44, 70, 184, 499, 748
EcoT14I	CCWWGG	4 cut(s)	6, 56, 247, 546
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	4 cut(s)	6, 56, 247, 546
FaeI	CATG	4 cut(s)	93, 308, 390, 595
FaiI	YATR	8 cut(s)	24, 91, 95, 306, 388, 491, 534, 593
FatI	CATG	4 cut(s)	89, 304, 386, 591
Fnu4HI	GCNGC	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	4 cut(s)	98, 365, 374, 781
GluI	GCNGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	5, 11, 671
HapII	CCGG	2 cut(s)	225, 567
HgaI	GACGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	93, 308, 390, 595
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	81
HpaI	GTTAAC	1 cut(s)	760
HpaII	CCGG	2 cut(s)	225, 567
HphI	GGTGA	3 cut(s)	186, 239, 413
Hpy166II	GTNNAC	4 cut(s)	113, 152, 194, 760
Hpy188I	TCNGA	2 cut(s)	262, 342
Hpy188III	TCNNGA	6 cut(s)	85, 164, 200, 266, 611, 646
Hpy8I	GTNNAC	4 cut(s)	113, 152, 194, 760
HpyAV	CCTTC	2 cut(s)	230, 464
HpyCH4IV	ACGT	2 cut(s)	115, 756
HpyCH4V	TGCA	7 cut(s)	287, 304, 326, 419, 445, 662, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
HpyF3I	CTNAG	2 cut(s)	201, 612
HpySE526I	ACGT	2 cut(s)	115, 756
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	4 cut(s)	93, 308, 390, 595
KpnI	GGTACC	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	760
Kzo9I	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
LmnI	GCTCC	2 cut(s)	122, 504
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	4 cut(s)	98, 365, 374, 781
MaeII	ACGT	2 cut(s)	115, 756
MaeIII	GTNAC	3 cut(s)	82, 270, 752
MalI	GATC	8 cut(s)	264, 344, 542, 590, 607, 644, 735, 747
MboI	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
MboII	GAAGA	2 cut(s)	489, 612
MflI	RGATCY	3 cut(s)	540, 605, 745
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	62, 336, 446
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	28, 171, 207, 388, 540, 596
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	77, 495, 759
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	225, 567
MspR9I	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
MvaI	CCWGG	5 cut(s)	46, 72, 186, 501, 750
MwoI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
NciI	CCSGG	2 cut(s)	225, 567
NdeII	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
NlaIII	CATG	4 cut(s)	93, 308, 390, 595
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	2 cut(s)	82, 752
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	89
Psp6I	CCWGG	5 cut(s)	44, 70, 184, 499, 748
PspCI	CACGTG	1 cut(s)	116
PspGI	CCWGG	5 cut(s)	44, 70, 184, 499, 748
PspN4I	GGNNCC	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	3 cut(s)	540, 605, 745
RsaI	GTAC	2 cut(s)	112, 563
RsaNI	GTAC	2 cut(s)	111, 562
SaqAI	TTAA	3 cut(s)	77, 495, 759
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	8 cut(s)	262, 342, 540, 588, 605, 642, 733, 745
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	8 cut(s)	38, 118, 199, 295, 403, 434, 475, 759
SfaNI	GCATC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	62, 336, 446
SspMI	CTAG	4 cut(s)	98, 365, 374, 781
StyD4I	CCNGG	7 cut(s)	44, 70, 184, 223, 499, 565, 748
StyI	CCWWGG	4 cut(s)	6, 56, 247, 546
TaiI	ACGT	2 cut(s)	118, 759
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	62, 336, 446
TatI	WGTACW	1 cut(s)	110
Tru1I	TTAA	3 cut(s)	77, 495, 759
Tru9I	TTAA	3 cut(s)	77, 495, 759
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	2 cut(s)	82, 752
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	2 cut(s)	82, 752
TspRI	CASTG	1 cut(s)	709
XapI	RAATTY	2 cut(s)	62, 336
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	4 cut(s)	98, 365, 374, 781
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.