Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017128

Physical Location & Seq

Genomic Coordinates Reverse (-)

4778673 .. 4781048

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCTTGGCCATTGCCTCTTCTGCACTCTCGAGCTTCCCAACCAGGGAAGTGCCTTGGAAATTTTCCCCAGGATTAAGAGTCACAACATGTATGCTAGGGAGAGGTAGTACACGTGTTGGAGCAGGCAAAGGGGTGTCAAGTGTTTGTGAACCACTCCCTCCAGATAGACCATTGTGGTTTCCTGGTAGTTCACCTCCCGAGTGGCTTGATGGCAGCCTTCCTGGTGATTTTGGCTTCGACCCCCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAATGGTTTGCACAAGCTGAACTGATGCATGGCAGATGGGCAATGCTTGCAGTAGCAGGGATTCTGATCCCAGAGTGGGCTGAAAGACTAGGATTCTTAGAAAACTTCTCATGGTTTGAGGCAGGTGAAAGAGAATACTTTGCAGACCCAACAACTTTGTTTGTGGTGCAATTAGCACTAATGGGTTGGGTTGAAGGTAGGAGATGGGCAGATATGCTTAATCCTGGGAGTGTTTCCATTGAGCCTAAATTGCCTCATAAGAAAATCCCCAAGGCAGATGTCGGGTATCCGGGCGGGTTATTTTTTGACCCGATAATGTGGGGAAGAGGGTCTCCTGAGCCTGTGATGGTGTTGAGAACAAAGGAGATCAAGAATGGACGTCTTGCAATGTTGGCCTTTGTAGGGTTCTTGTTCCAAGCACTTTACACTGGGAAGGACCCTATTGAGAATTTGATGGATCATATTGCAGATCCTGGTCATGTTAACATATTTTCGGCTTTCACTTCACAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

264

Amino Acids

28.99

Weight (kDa)

5.45

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	35 - 201	8.5e-53	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19150
fragaria_vesca	FvH4_1g09040 FvH4_1g09040
malus_domestica	MD02G1095600.v1.1
prunus_persica	Prupe.7G195500_v2.0.a1
pyrus_communis	pycom02g07570
rosa_chinensis	RchiOBHm_Chr2g0095461
rosa_laevigata	RLG00000016569
rosa_multiflora	Rmu_sc0006076.1_g000012
rosa_roxburghii	Rroxscaffold_2G00146320
rosa_rugosa	Rorug02G0051300
rosa_samantha	Rh2DG100200
rosa_wichuraiana	Rw2G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
AatII	GACGTC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	389
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	4 cut(s)	257, 337, 740, 741
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	62, 724
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	3 cut(s)	46, 352, 678
AflIII	ACRYGT	3 cut(s)	89, 113, 115
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	6 cut(s)	44, 70, 184, 223, 499, 748
AluBI	AGCT	2 cut(s)	36, 293
AluI	AGCT	2 cut(s)	36, 293
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	4 cut(s)	257, 337, 740, 741
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	2 cut(s)	31, 200
AoxI	GGCC	3 cut(s)	3, 9, 669
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	2 cut(s)	62, 724
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	3 cut(s)	186, 239, 413
AvaI	CYCGRG	2 cut(s)	31, 200
AvaII	GGWCC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	11
BbrPI	CACGTG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	5 cut(s)	206, 306, 474, 616, 724
BciT130I	CCWGG	6 cut(s)	46, 72, 186, 225, 501, 750
BciVI	GTATCC	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	3 cut(s)	98, 365, 790
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
Bme18I	GGWCC	1 cut(s)	712
BmeT110I	CYCGRG	2 cut(s)	31, 200
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	655
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	7 cut(s)	6, 45, 56, 70, 247, 500, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 352, 678
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	3 cut(s)	12, 324, 669
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	6 cut(s)	46, 72, 186, 225, 501, 750
BseDI	CCNNGG	7 cut(s)	6, 45, 56, 70, 247, 500, 546
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	46, 352, 678
BseMI	GCAATG	3 cut(s)	12, 324, 669
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	5, 11, 671
BsiHKCI	CYCGRG	2 cut(s)	31, 200
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	46, 352, 678
BsmAI	GTCTC	1 cut(s)	612
BsnI	GGCC	3 cut(s)	5, 11, 671
Bso31I	GGTCTC	1 cut(s)	612
BsoBI	CYCGRG	2 cut(s)	31, 200
Bsp143I	GATC	5 cut(s)	262, 342, 642, 733, 745
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	3 cut(s)	5, 11, 671
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	714
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	4 cut(s)	257, 337, 740, 741
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	3 cut(s)	12, 324, 669
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	7 cut(s)	6, 45, 56, 70, 247, 500, 546
BssMI	GATC	5 cut(s)	262, 342, 642, 733, 745
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	4 cut(s)	6, 56, 247, 546
Bst2UI	CCWGG	6 cut(s)	46, 72, 186, 225, 501, 750
Bst6I	CTCTTC	2 cut(s)	25, 595
BstACI	GRCGYC	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	127, 324
BstDEI	CTNAG	2 cut(s)	373, 612
BstKTI	GATC	5 cut(s)	265, 345, 645, 736, 748
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	5 cut(s)	262, 342, 642, 733, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
BstNI	CCWGG	6 cut(s)	46, 72, 186, 225, 501, 750
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	7 cut(s)	44, 70, 184, 223, 499, 565, 748
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	5, 11, 671
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	127, 324
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr13I	GGNCC	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	4 cut(s)	90, 305, 387, 755
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	373, 612
DpnI	GATC	5 cut(s)	264, 344, 644, 735, 747
DpnII	GATC	5 cut(s)	262, 342, 642, 733, 745
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	25, 595
EarI	CTCTTC	2 cut(s)	25, 595
Eco130I	CCWWGG	4 cut(s)	6, 56, 247, 546
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	712
Eco72I	CACGTG	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	31, 200
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	6 cut(s)	44, 70, 184, 223, 499, 748
EcoT14I	CCWWGG	4 cut(s)	6, 56, 247, 546
EcoT22I	ATGCAT	1 cut(s)	306
ErhI	CCWWGG	4 cut(s)	6, 56, 247, 546
FaeI	CATG	4 cut(s)	93, 308, 390, 758
FaiI	YATR	9 cut(s)	91, 95, 306, 388, 491, 534, 738, 756, 764
FatI	CATG	4 cut(s)	89, 304, 386, 754
FauI	CCCGC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	3 cut(s)	98, 365, 790
GluI	GCNGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	5, 11, 671
HapII	CCGG	1 cut(s)	566
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	93, 308, 390, 758
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	3 cut(s)	81, 337, 369
HpaI	GTTAAC	1 cut(s)	760
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	3 cut(s)	186, 239, 413
Hpy166II	GTNNAC	4 cut(s)	113, 152, 194, 760
Hpy188I	TCNGA	2 cut(s)	262, 342
Hpy188III	TCNNGA	6 cut(s)	31, 164, 200, 266, 611, 646
Hpy8I	GTNNAC	4 cut(s)	113, 152, 194, 760
HpyAV	CCTTC	3 cut(s)	230, 464, 703
HpyCH4IV	ACGT	2 cut(s)	115, 655
HpyCH4V	TGCA	8 cut(s)	26, 287, 304, 326, 419, 445, 662, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
HpyF3I	CTNAG	2 cut(s)	373, 612
HpySE526I	ACGT	2 cut(s)	115, 655
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	4 cut(s)	93, 308, 390, 758
KspAI	GTTAAC	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	262, 342, 642, 733, 745
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	3 cut(s)	98, 365, 790
MaeII	ACGT	2 cut(s)	115, 655
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	264, 344, 644, 735, 747
MboI	GATC	5 cut(s)	262, 342, 642, 733, 745
MboII	GAAGA	2 cut(s)	12, 612
MflI	RGATCY	1 cut(s)	745
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	4 cut(s)	62, 446, 524, 724
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	7 cut(s)	28, 98, 171, 207, 388, 540, 596
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	77, 495, 759
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
MvaI	CCWGG	6 cut(s)	46, 72, 186, 225, 501, 750
MwoI	GCNNNNNNNGC	4 cut(s)	23, 323, 526, 668
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	5 cut(s)	262, 342, 642, 733, 745
NlaIII	CATG	4 cut(s)	93, 308, 390, 758
NlaIV	GGNNCC	1 cut(s)	714
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	337, 369
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	712
PscI	ACATGT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	6 cut(s)	44, 70, 184, 223, 499, 748
PspCI	CACGTG	1 cut(s)	116
PspGI	CCWGG	6 cut(s)	44, 70, 184, 223, 499, 748
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	712
PspPPI	RGGWCCY	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	77, 495, 759
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	5 cut(s)	262, 342, 642, 733, 745
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	7 cut(s)	46, 72, 186, 225, 501, 567, 750
SetI	ASST	8 cut(s)	38, 109, 118, 199, 295, 403, 475, 658
SfaNI	GCATC	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	712
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	4 cut(s)	62, 446, 524, 724
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	3 cut(s)	98, 365, 790
StyD4I	CCNGG	7 cut(s)	44, 70, 184, 223, 499, 565, 748
StyI	CCWWGG	4 cut(s)	6, 56, 247, 546
TaiI	ACGT	2 cut(s)	118, 658
TaqI	TCGA	2 cut(s)	32, 240
TasI	AATT	4 cut(s)	62, 446, 524, 724
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	337, 369
Tru1I	TTAA	3 cut(s)	77, 495, 759
Tru9I	TTAA	3 cut(s)	77, 495, 759
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	82
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	2 cut(s)	62, 724
XceI	RCATGY	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	3 cut(s)	98, 365, 790
ZraI	GACGTC	1 cut(s)	656
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.