Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Reverse (-)

6936898 .. 6937666

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCTTTAACGCAAGGTCTTGTTGTTTTGCTAGTAGCAACGAGCGGGTTACTTGTAACTGCAATTGTCTGAAAGATCAGCCAGTGCCAAGAATGAAGCATTCGAAGGATCCGTTTGAAGCAGCAATGGAGGAGCAAGAGGAATCACCTGTTGAAACCGAGCAGACTCTTGAAGGAGATGAGAGAGCTGTGAAGAAATGTAAAACGTCCGTTGTTGCTGAAGCGAAGAACAAAGATGAAGTTGAGTTCACCAAAAACATAACTGGTGCTGATCCTGTGACTAGAGCCAACAAGATGCAGAAGATTTTATCACAATTTACAGAGGAACAAATGAGCAGATATGAATCTTTCAGAAGATCTGGTTTTAAGAAATCAGACATGGAGAAGTTGGTACAGAGAATCACAGGGGGTCCGAAGATGGACGACACTATGAACATCGTTGTGCGTGGTATCGCAAAGATGTTTGTTGGCGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAGGAATCAGGACCTATTAGACCTTGCCATATCAGAGAGTCATATCGAAGACTAAAGCTCCAAGGAAAAGTGCCTCAAAGATCAGTTCAACGGCTTTTTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

204

Amino Acids

23.43

Weight (kDa)

9.28

Isoelectric Point (pI)

60.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	102 - 187	9.6e-33	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	3 cut(s)	104, 117, 266
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	119, 155, 173, 599
AluBI	AGCT	3 cut(s)	188, 488, 568
AluI	AGCT	3 cut(s)	188, 488, 568
AlwI	GGATC	3 cut(s)	104, 117, 266
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	410, 521
AsuHPI	GGTGA	2 cut(s)	138, 241
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	410, 521
BamHI	GGATCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	412
BfaI	CTAG	3 cut(s)	33, 282, 613
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	410, 521
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	410, 521
BmiI	GGNNCC	2 cut(s)	111, 411
BmsI	GCATC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bse1I	ACTGG	2 cut(s)	83, 268
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	83, 268
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	489
Bsp119I	TTCGAA	1 cut(s)	104
Bsp143I	GATC	5 cut(s)	76, 109, 271, 356, 590
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	111, 411
BspPI	GGATC	3 cut(s)	104, 117, 266
BspT104I	TTCGAA	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	83, 268
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	5 cut(s)	76, 109, 271, 356, 590
BssT1I	CCWWGG	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	104
BstKTI	GATC	5 cut(s)	79, 112, 274, 359, 593
BstMBI	GATC	5 cut(s)	76, 109, 271, 356, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	109, 356
BstYI	RGATCY	2 cut(s)	109, 356
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	410, 521
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	7 cut(s)	5, 82, 188, 287, 488, 568, 604
CviKI_1	RGCY	7 cut(s)	5, 82, 188, 287, 488, 568, 604
CviQI	GTAC	1 cut(s)	392
DpnI	GATC	5 cut(s)	78, 111, 273, 358, 592
DpnII	GATC	5 cut(s)	76, 109, 271, 356, 590
Eco130I	CCWWGG	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	410, 521
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	1 cut(s)	382
FaiI	YATR	7 cut(s)	260, 342, 380, 431, 500, 540, 553
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	33, 282, 613
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	382
HinfI	GANTC	6 cut(s)	143, 166, 344, 399, 515, 548
HphI	GGTGA	2 cut(s)	138, 241
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	5 cut(s)	72, 353, 376, 414, 545
Hpy188III	TCNNGA	2 cut(s)	170, 519
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	100, 167, 505
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	63, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	76, 109, 271, 356, 590
LmnI	GCTCC	2 cut(s)	133, 573
LpnPI	CCDG	7 cut(s)	96, 162, 249, 288, 345, 390, 504
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	3 cut(s)	33, 282, 613
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	49, 56, 277
MalI	GATC	5 cut(s)	78, 111, 273, 358, 592
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	5 cut(s)	76, 109, 271, 356, 590
MboII	GAAGA	6 cut(s)	205, 238, 313, 366, 427, 570
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	2 cut(s)	109, 356
MluCI	AATT	2 cut(s)	64, 314
MlyI	GAGTC	2 cut(s)	160, 557
MnlI	CCTC	5 cut(s)	124, 133, 316, 495, 594
MseI	TTAA	2 cut(s)	9, 366
MslI	CAYNNNNRTG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	76, 109, 271, 356, 590
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	111, 411
NmuCI	GTSAC	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	143, 344, 399, 515
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	160, 556
PpsI	GAGTC	2 cut(s)	160, 556
PpuMI	RGGWCCY	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	111, 411
PspPI	GGNCC	2 cut(s)	410, 521
PspPPI	RGGWCCY	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	109, 356
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	9, 366
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	76, 109, 271, 356, 590
Sau96I	GGNCC	2 cut(s)	410, 521
SchI	GAGTC	2 cut(s)	160, 557
SetI	ASST	9 cut(s)	20, 151, 190, 209, 477, 490, 526, 535, 570
SfaNI	GCATC	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	2 cut(s)	410, 521
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	64, 314
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	3 cut(s)	33, 282, 613
StyI	CCWWGG	1 cut(s)	571
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	104, 490, 556
TasI	AATT	2 cut(s)	64, 314
TfiI	GAWTC	4 cut(s)	143, 344, 399, 515
Tru1I	TTAA	2 cut(s)	9, 366
Tru9I	TTAA	2 cut(s)	9, 366
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	110, 252, 357, 446
TspGWI	ACGGA	2 cut(s)	102, 199
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	410, 521
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	3 cut(s)	33, 282, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.