Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Forward (+)

8030806 .. 8033602

Gene Structure 2797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGCAGCAATCCAAGGACCCATTCGAAGCGGCCTTCGAGGAGCAAGACGACTCGCCGCCCGATTCTCCCGCCGCCGTCGACGCCATACGCGCCGCCCTCGACGAAGATTACGACGAAGGTCTCCCCCCTGAAGAACCCCCGCCATCCTCATCCACACCATCCACCTCCACCGCCGCCGCCGCCGCACCAACCACCGCAACCGCCGTCGCCACCGTAACTCCCACCACCAAAACCCTAACCAAGAAAAGCTCTGCAAAGCCACCTATTGCTCGGGCCGCCAAGCAGAGCCAGCAGAACAAGGAGGAGGATGATGACGAAGACGAGGACAACGTCGATGTCGAGCTCGGGAAGTATCCGGCGACCGGTGACCCTGTGAAGATGGCGAAGATGCAGGCTATTTTATCGCGATTCTCGGAGGAGCAGATGAGTAGATATGAGTCTTTCCGGAGAGCTGGGTTTCAGAAGTCTAACATGAAAAGGCTGCTAGCAAGCATCAGTGGAACCCCGAAAATATCGGTGCCAATGACGATTGTGGTGTCAGGGATAGCAAAAATATTTGTTGGTGAACTTGTTGAAACAGCCAGAATGGTTATGTCAGAGAGGAGAGAATCTGGGCCAATTCGACCATGCCACATCAGAGAATCATACCGAAGATTAAAGCTGGAAGGCAAAGTCCCCAAGAGATCAGTCTCAAGGCTCTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

237

Amino Acids

25.87

Weight (kDa)

6.06

Isoelectric Point (pI)

73.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	134 - 219	5.4e-32	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	93, 409
AccIII	TCCGGA	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	252, 346, 455, 664
AluI	AGCT	4 cut(s)	252, 346, 455, 664
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	128, 697
Ama87I	CYCGRG	2 cut(s)	273, 347
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	3 cut(s)	33, 276, 617
ApeKI	GCWGC	2 cut(s)	7, 484
AsiGI	ACCGGT	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	19, 276, 617
AsuHPI	GGTGA	2 cut(s)	380, 578
AsuII	TTCGAA	1 cut(s)	27
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	2 cut(s)	273, 347
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	19, 471
BccI	CCATC	3 cut(s)	154, 169, 376
BceAI	ACGGC	2 cut(s)	62, 191
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	128, 697
BfaI	CTAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	273, 347
BmgT120I	GGNCC	3 cut(s)	19, 276, 617
BmiI	GGNNCC	3 cut(s)	21, 505, 522
BmsI	GCATC	2 cut(s)	381, 504
BmtI	GCTAGC	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	3 cut(s)	365, 447, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	4 cut(s)	146, 152, 161, 316
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseRI	GAGGAG	4 cut(s)	56, 320, 434, 619
BseXI	GCAGC	2 cut(s)	19, 471
BseYI	CCCAGC	1 cut(s)	455
Bsh1236I	CGCG	2 cut(s)	93, 409
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	35, 278, 619
BshNI	GGYRCC	1 cut(s)	520
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	2 cut(s)	273, 347
BsiSI	CCGG	4 cut(s)	359, 366, 448, 706
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	128, 697
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	3 cut(s)	35, 278, 619
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	273, 347
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	686
Bsp68I	TCGCGA	1 cut(s)	409
BspANI	GGCC	3 cut(s)	35, 278, 619
BspEI	TCCGGA	1 cut(s)	447
BspFNI	CGCG	2 cut(s)	93, 409
BspLI	GGNNCC	3 cut(s)	21, 505, 522
BspOI	GCTAGC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	686
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	293, 396, 489, 493
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	146, 152, 161, 316
BstFNI	CGCG	2 cut(s)	93, 409
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	689
BstMAI	GTCTC	2 cut(s)	128, 697
BstMBI	GATC	1 cut(s)	686
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 182, 185, 278, 292
BstPAI	GACNNNNGTC	1 cut(s)	120
BstPI	GGTNACC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	93, 409
BstV1I	GCAGC	2 cut(s)	19, 471
BstV2I	GAAGAC	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	35, 278, 619
BtsCI	GGATG	4 cut(s)	146, 152, 161, 316
BtsIMutI	CAGTG	1 cut(s)	505
BtuMI	TCGCGA	1 cut(s)	409
Cac8I	GCNNGC	4 cut(s)	293, 396, 489, 493
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	19, 276, 617
CseI	GACGC	1 cut(s)	92
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	2 cut(s)	475, 630
DpnI	GATC	1 cut(s)	688
DpnII	GATC	1 cut(s)	686
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	273, 347
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	478, 633
FaiI	YATR	6 cut(s)	89, 438, 476, 596, 631, 649
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	2 cut(s)	474, 629
FauI	CCCGC	2 cut(s)	79, 150
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	4 cut(s)	133, 139, 148, 323
FriOI	GRGCYC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	94
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	35, 278, 619
HapII	CCGG	4 cut(s)	359, 366, 448, 706
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	478, 633
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	6 cut(s)	53, 65, 411, 440, 611, 644
HpaII	CCGG	4 cut(s)	359, 366, 448, 706
HphI	GGTGA	2 cut(s)	380, 578
Hpy166II	GTNNAC	2 cut(s)	82, 569
Hpy188I	TCNGA	4 cut(s)	418, 465, 601, 641
Hpy188III	TCNNGA	3 cut(s)	349, 408, 448
Hpy8I	GTNNAC	2 cut(s)	82, 569
Hpy99I	CGWCG	6 cut(s)	83, 86, 107, 119, 212, 338
HpyAV	CCTTC	3 cut(s)	46, 113, 662
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	257, 394
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 182, 185, 278, 292
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	478, 633
HspAI	GCGC	1 cut(s)	93
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	686
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	2 cut(s)	43, 421
Lsp1109I	GCAGC	2 cut(s)	19, 471
LweI	GCATC	2 cut(s)	381, 504
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	217, 368
MalI	GATC	1 cut(s)	688
MboI	GATC	1 cut(s)	686
MboII	GAAGA	7 cut(s)	119, 146, 332, 391, 400, 666, 694
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	47, 449
MnlI	CCTC	9 cut(s)	34, 110, 160, 178, 298, 301, 319, 412, 597
MroI	TCCGGA	1 cut(s)	447
MseI	TTAA	1 cut(s)	659
MspI	CCGG	4 cut(s)	359, 366, 448, 706
MvnI	CGCG	2 cut(s)	93, 409
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 182, 185, 278, 292
NdeII	GATC	1 cut(s)	686
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	478, 633
NlaIV	GGNNCC	3 cut(s)	21, 505, 522
NmuCI	GTSAC	1 cut(s)	368
NruI	TCGCGA	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 330, 339
PfeI	GAWTC	4 cut(s)	65, 411, 611, 644
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	365
PleI	GAGTC	2 cut(s)	47, 448
PpsI	GAGTC	2 cut(s)	47, 448
PpuMI	RGGWCCY	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	21, 505, 522
PspPI	GGNCC	3 cut(s)	19, 276, 617
PspPPI	RGGWCCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	332
RruI	TCGCGA	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	1 cut(s)	659
Sau3AI	GATC	1 cut(s)	686
Sau96I	GGNCC	3 cut(s)	19, 276, 617
SchI	GAGTC	2 cut(s)	47, 449
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	124, 170, 254, 268, 336, 348, 457, 666
SfaNI	GCATC	2 cut(s)	381, 504
SfuI	TTCGAA	1 cut(s)	27
SgrDI	CGTCGACG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	1 cut(s)	621
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	488
SstI	GAGCTC	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	7 cut(s)	27, 39, 81, 102, 336, 342, 625
TasI	AATT	1 cut(s)	621
TauI	GCSGC	9 cut(s)	35, 61, 77, 98, 179, 182, 185, 188, 281
TfiI	GAWTC	4 cut(s)	65, 411, 611, 644
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	7, 484
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.