Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20000 AT4G20280 |
| fragaria_vesca | FvH4_3g13420 FvH4_3g13420 FvH4_3g13420 |
| malus_domestica | MD10G1223700.v1.1 |
| prunus_persica | Prupe.4G121600_v2.0.a1 |
| pyrus_communis | pycom10g18760 |
| rosa_chinensis | RchiOBHm_Chr5g0022151 |
| rosa_laevigata | RLG00000032648 |
| rosa_multiflora | Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00056780 |
| rosa_rugosa | Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900 |
| rosa_samantha | Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200 |
| rosa_wichuraiana | Rw5G014260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 743 |
| AccB1I | GGYRCC | 1 cut(s) | 1241 |
| AccI | GTMKAC | 2 cut(s) | 573, 890 |
| AciI | CCGC | 3 cut(s) | 30, 138, 1331 |
| AclI | AACGTT | 1 cut(s) | 537 |
| AclWI | GGATC | 1 cut(s) | 418 |
| AcoI | YGGCCR | 2 cut(s) | 57, 675 |
| AcsI | RAATTY | 1 cut(s) | 763 |
| AcuI | CTGAAG | 3 cut(s) | 965, 1184, 1343 |
| AcyI | GRCGYC | 2 cut(s) | 126, 740 |
| AfaI | GTAC | 2 cut(s) | 150, 373 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 180, 207 |
| AflIII | ACRYGT | 2 cut(s) | 510, 1231 |
| AhlI | ACTAGT | 1 cut(s) | 374 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 656, 688 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 462, 494 |
| Alw21I | GWGCWC | 1 cut(s) | 40 |
| Alw26I | GTCTC | 1 cut(s) | 731 |
| AlwI | GGATC | 1 cut(s) | 418 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 584 |
| Ama87I | CYCGRG | 1 cut(s) | 279 |
| AoxI | GGCC | 4 cut(s) | 57, 675, 1163, 1195 |
| ApeKI | GCWGC | 3 cut(s) | 392, 776, 1382 |
| ApoI | RAATTY | 1 cut(s) | 763 |
| AspA2I | CCTAGG | 1 cut(s) | 502 |
| AspLEI | GCGC | 1 cut(s) | 1402 |
| AspS9I | GGNCC | 2 cut(s) | 595, 1079 |
| AsuHPI | GGTGA | 1 cut(s) | 1123 |
| AsuII | TTCGAA | 1 cut(s) | 1060 |
| AvaI | CYCGRG | 1 cut(s) | 279 |
| AvaII | GGWCC | 2 cut(s) | 595, 1079 |
| AvrII | CCTAGG | 1 cut(s) | 502 |
| BalI | TGGCCA | 2 cut(s) | 59, 677 |
| BanI | GGYRCC | 1 cut(s) | 1241 |
| BanII | GRGCYC | 1 cut(s) | 40 |
| BbsI | GAAGAC | 3 cut(s) | 453, 875, 1331 |
| Bbv12I | GWGCWC | 1 cut(s) | 40 |
| BbvI | GCAGC | 3 cut(s) | 379, 763, 1394 |
| BccI | CCATC | 4 cut(s) | 68, 209, 899, 1336 |
| BceAI | ACGGC | 2 cut(s) | 113, 789 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BcoDI | GTCTC | 1 cut(s) | 731 |
| BcuI | ACTAGT | 1 cut(s) | 374 |
| BfaI | CTAG | 5 cut(s) | 12, 375, 503, 530, 1172 |
| BfmI | CTRYAG | 1 cut(s) | 1083 |
| BisI | GCNGC | 4 cut(s) | 138, 393, 777, 1383 |
| BlnI | CCTAGG | 1 cut(s) | 502 |
| BlsI | GCNGC | 4 cut(s) | 139, 394, 778, 1384 |
| BmcAI | AGTACT | 1 cut(s) | 373 |
| Bme18I | GGWCC | 2 cut(s) | 595, 1079 |
| BmeT110I | CYCGRG | 1 cut(s) | 279 |
| BmgT120I | GGNCC | 2 cut(s) | 595, 1079 |
| BmiI | GGNNCC | 2 cut(s) | 596, 1243 |
| BmrI | ACTGGG | 1 cut(s) | 601 |
| BmsI | GCATC | 3 cut(s) | 448, 1081, 1103 |
| BmuI | ACTGGG | 1 cut(s) | 601 |
| BpiI | GAAGAC | 3 cut(s) | 453, 875, 1331 |
| BpmI | CTGGAG | 2 cut(s) | 245, 947 |
| Bpu14I | TTCGAA | 1 cut(s) | 1060 |
| BpuEI | CTTGAG | 3 cut(s) | 226, 815, 1031 |
| BsaHI | GRCGYC | 2 cut(s) | 126, 740 |
| BsaJI | CCNNGG | 2 cut(s) | 278, 502 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 180, 207 |
| Bse1I | ACTGG | 2 cut(s) | 596, 1254 |
| BseDI | CCNNGG | 2 cut(s) | 278, 502 |
| BseGI | GGATG | 2 cut(s) | 60, 946 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 180, 207 |
| BseMII | CTCAG | 4 cut(s) | 501, 593, 1190, 1284 |
| BseNI | ACTGG | 2 cut(s) | 596, 1254 |
| BseRI | GAGGAG | 2 cut(s) | 412, 909 |
| BseXI | GCAGC | 3 cut(s) | 379, 763, 1394 |
| BsgI | GTGCAG | 1 cut(s) | 1043 |
| Bsh1285I | CGRYCG | 1 cut(s) | 109 |
| BshFI | GGCC | 4 cut(s) | 59, 677, 1165, 1197 |
| BshNI | GGYRCC | 1 cut(s) | 1241 |
| BsiEI | CGRYCG | 1 cut(s) | 109 |
| BsiHKAI | GWGCWC | 1 cut(s) | 40 |
| BsiHKCI | CYCGRG | 1 cut(s) | 279 |
| BsiSI | CCGG | 1 cut(s) | 33 |
| BslFI | GGGAC | 1 cut(s) | 484 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 180, 207 |
| BsmAI | GTCTC | 1 cut(s) | 731 |
| BsmBI | CGTCTC | 1 cut(s) | 731 |
| BsmFI | GGGAC | 1 cut(s) | 484 |
| BsnI | GGCC | 4 cut(s) | 59, 677, 1165, 1197 |
| BsoBI | CYCGRG | 1 cut(s) | 279 |
| Bsp119I | TTCGAA | 1 cut(s) | 1060 |
| Bsp1286I | GDGCHC | 1 cut(s) | 40 |
| Bsp143I | GATC | 3 cut(s) | 192, 410, 721 |
| BspACI | CCGC | 3 cut(s) | 30, 138, 1331 |
| BspANI | GGCC | 4 cut(s) | 59, 677, 1165, 1197 |
| BspCNI | CTCAG | 4 cut(s) | 500, 594, 1189, 1285 |
| BspLI | GGNNCC | 2 cut(s) | 596, 1243 |
| BspPI | GGATC | 1 cut(s) | 418 |
| BspT104I | TTCGAA | 1 cut(s) | 1060 |
| BspT107I | GGYRCC | 1 cut(s) | 1241 |
| BsrI | ACTGG | 2 cut(s) | 596, 1254 |
| BssECI | CCNNGG | 2 cut(s) | 278, 502 |
| BssMI | GATC | 3 cut(s) | 192, 410, 721 |
| BssNI | GRCGYC | 2 cut(s) | 126, 740 |
| BssT1I | CCWWGG | 1 cut(s) | 502 |
| Bst4CI | ACNGT | 2 cut(s) | 569, 1374 |
| Bst6I | CTCTTC | 1 cut(s) | 39 |
| BstACI | GRCGYC | 2 cut(s) | 126, 740 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 584, 785 |
| BstBI | TTCGAA | 1 cut(s) | 1060 |
| BstDEI | CTNAG | 4 cut(s) | 487, 602, 1176, 1293 |
| BstF5I | GGATG | 2 cut(s) | 60, 946 |
| BstHHI | GCGC | 1 cut(s) | 1402 |
| BstKTI | GATC | 3 cut(s) | 195, 413, 724 |
| BstMAI | GTCTC | 1 cut(s) | 731 |
| BstMBI | GATC | 3 cut(s) | 192, 410, 721 |
| BstMCI | CGRYCG | 1 cut(s) | 109 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 134, 584, 622, 713, 755, 785 |
| BstNSI | RCATGY | 3 cut(s) | 514, 625, 1235 |
| BstSFI | CTRYAG | 1 cut(s) | 1083 |
| BstV1I | GCAGC | 3 cut(s) | 379, 763, 1394 |
| BstV2I | GAAGAC | 3 cut(s) | 453, 875, 1331 |
| BsuRI | GGCC | 4 cut(s) | 59, 677, 1165, 1197 |
| BtsCI | GGATG | 2 cut(s) | 60, 946 |
| BtsIMutI | CAGTG | 2 cut(s) | 1261, 1370 |
| CaiI | CAGNNNCTG | 1 cut(s) | 584 |
| CfoI | GCGC | 1 cut(s) | 1402 |
| Cfr13I | GGNCC | 2 cut(s) | 595, 1079 |
| CseI | GACGC | 1 cut(s) | 134 |
| Csp6I | GTAC | 2 cut(s) | 149, 372 |
| CviAII | CATG | 7 cut(s) | 328, 511, 622, 823, 1193, 1221, 1232 |
| CviQI | GTAC | 2 cut(s) | 149, 372 |
| DdeI | CTNAG | 4 cut(s) | 487, 602, 1176, 1293 |
| DpnI | GATC | 3 cut(s) | 194, 412, 723 |
| DpnII | GATC | 3 cut(s) | 192, 410, 721 |
| EaeI | YGGCCR | 2 cut(s) | 57, 675 |
| Eam1104I | CTCTTC | 1 cut(s) | 39 |
| EarI | CTCTTC | 1 cut(s) | 39 |
| Ecl136II | GAGCTC | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 502 |
| Eco24I | GRGCYC | 1 cut(s) | 40 |
| Eco47I | GGWCC | 2 cut(s) | 595, 1079 |
| Eco53kI | GAGCTC | 1 cut(s) | 38 |
| Eco57I | CTGAAG | 3 cut(s) | 965, 1184, 1343 |
| Eco88I | CYCGRG | 1 cut(s) | 279 |
| EcoICRI | GAGCTC | 1 cut(s) | 38 |
| EcoO109I | RGGNCCY | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 1 cut(s) | 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 1096 |
| EcoT38I | GRGCYC | 1 cut(s) | 40 |
| ErhI | CCWWGG | 1 cut(s) | 502 |
| Esp3I | CGTCTC | 1 cut(s) | 731 |
| FaeI | CATG | 7 cut(s) | 331, 514, 625, 826, 1196, 1224, 1235 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 656, 688 |
| FaqI | GGGAC | 1 cut(s) | 484 |
| FatI | CATG | 7 cut(s) | 327, 510, 621, 822, 1192, 1220, 1231 |
| FblI | GTMKAC | 2 cut(s) | 573, 890 |
| Fnu4HI | GCNGC | 4 cut(s) | 138, 393, 777, 1383 |
| FokI | GGATG | 2 cut(s) | 47, 953 |
| FriOI | GRGCYC | 1 cut(s) | 40 |
| Fsp4HI | GCNGC | 4 cut(s) | 138, 393, 777, 1383 |
| FspBI | CTAG | 5 cut(s) | 12, 375, 503, 530, 1172 |
| GlaI | GCGC | 1 cut(s) | 1401 |
| GluI | GCNGC | 4 cut(s) | 138, 393, 777, 1383 |
| GsuI | CTGGAG | 2 cut(s) | 245, 947 |
| HaeIII | GGCC | 4 cut(s) | 59, 677, 1165, 1197 |
| HapII | CCGG | 1 cut(s) | 33 |
| HgaI | GACGC | 1 cut(s) | 134 |
| HhaI | GCGC | 1 cut(s) | 1402 |
| Hin1I | GRCGYC | 2 cut(s) | 126, 740 |
| Hin1II | CATG | 7 cut(s) | 331, 514, 625, 826, 1196, 1224, 1235 |
| Hin6I | GCGC | 1 cut(s) | 1400 |
| HinP1I | GCGC | 1 cut(s) | 1400 |
| HincII | GTYRAC | 2 cut(s) | 418, 535 |
| HindII | GTYRAC | 2 cut(s) | 418, 535 |
| HindIII | AAGCTT | 2 cut(s) | 248, 1007 |
| HinfI | GANTC | 5 cut(s) | 68, 188, 419, 608, 971 |
| HpaII | CCGG | 1 cut(s) | 33 |
| HphI | GGTGA | 1 cut(s) | 1123 |
| Hpy166II | GTNNAC | 5 cut(s) | 418, 535, 574, 891, 1226 |
| Hpy188I | TCNGA | 8 cut(s) | 367, 490, 603, 736, 837, 914, 1294, 1323 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 205, 224, 542, 636, 938, 968 |
| Hpy8I | GTNNAC | 5 cut(s) | 418, 535, 574, 891, 1226 |
| Hpy99I | CGWCG | 3 cut(s) | 86, 107, 128 |
| HpyAV | CCTTC | 5 cut(s) | 539, 608, 658, 1062, 1208 |
| HpyCH4III | ACNGT | 2 cut(s) | 569, 1374 |
| HpyCH4IV | ACGT | 2 cut(s) | 537, 740 |
| HpyCH4V | TGCA | 9 cut(s) | 286, 461, 587, 779, 826, 883, 1024, 1094, 1310 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 134, 584, 622, 713, 755, 785 |
| HpyF3I | CTNAG | 4 cut(s) | 487, 602, 1176, 1293 |
| HpySE526I | ACGT | 2 cut(s) | 537, 740 |
| Hsp92I | GRCGYC | 2 cut(s) | 126, 740 |
| Hsp92II | CATG | 7 cut(s) | 331, 514, 625, 826, 1196, 1224, 1235 |
| HspAI | GCGC | 1 cut(s) | 1400 |
| Kzo9I | GATC | 3 cut(s) | 192, 410, 721 |
| LmnI | GCTCC | 6 cut(s) | 35, 226, 368, 850, 1106, 1280 |
| Lsp1109I | GCAGC | 3 cut(s) | 379, 763, 1394 |
| LweI | GCATC | 3 cut(s) | 448, 1081, 1103 |
| MaeI | CTAG | 5 cut(s) | 12, 375, 503, 530, 1172 |
| MaeII | ACGT | 2 cut(s) | 537, 740 |
| MaeIII | GTNAC | 2 cut(s) | 1129, 1268 |
| MalI | GATC | 3 cut(s) | 194, 412, 723 |
| MboI | GATC | 3 cut(s) | 192, 410, 721 |
| MboII | GAAGA | 9 cut(s) | 56, 187, 458, 877, 880, 971, 1271, 1336, 1351 |
| MfeI | CAATTG | 1 cut(s) | 783 |
| MhlI | GDGCHC | 1 cut(s) | 40 |
| MlsI | TGGCCA | 2 cut(s) | 59, 677 |
| MluCI | AATT | 2 cut(s) | 763, 783 |
| MluNI | TGGCCA | 2 cut(s) | 59, 677 |
| MlyI | GAGTC | 5 cut(s) | 62, 197, 413, 617, 965 |
| MmeI | TCCRAC | 2 cut(s) | 243, 457 |
| Mox20I | TGGCCA | 2 cut(s) | 59, 677 |
| Mph1103I | ATGCAT | 1 cut(s) | 1096 |
| MscI | TGGCCA | 2 cut(s) | 59, 677 |
| MseI | TTAA | 1 cut(s) | 246 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1114, 1340 |
| Msp20I | TGGCCA | 2 cut(s) | 59, 677 |
| MspA1I | CMGCKG | 1 cut(s) | 758 |
| MspI | CCGG | 1 cut(s) | 33 |
| MunI | CAATTG | 1 cut(s) | 783 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 134, 584, 622, 713, 755, 785 |
| NdeII | GATC | 3 cut(s) | 192, 410, 721 |
| NlaIII | CATG | 7 cut(s) | 331, 514, 625, 826, 1196, 1224, 1235 |
| NlaIV | GGNNCC | 2 cut(s) | 596, 1243 |
| NmuCI | GTSAC | 1 cut(s) | 1129 |
| NsiI | ATGCAT | 1 cut(s) | 1096 |
| NspI | RCATGY | 3 cut(s) | 514, 625, 1235 |
| NspV | TTCGAA | 1 cut(s) | 1060 |
| PciI | ACATGT | 2 cut(s) | 510, 1231 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 72, 102 |
| PkrI | GCNGC | 4 cut(s) | 139, 394, 778, 1384 |
| PleI | GAGTC | 5 cut(s) | 62, 196, 413, 616, 965 |
| PpsI | GAGTC | 5 cut(s) | 62, 196, 413, 616, 965 |
| PpuMI | RGGWCCY | 1 cut(s) | 595 |
| PscI | ACATGT | 2 cut(s) | 510, 1231 |
| Psp124BI | GAGCTC | 1 cut(s) | 40 |
| Psp1406I | AACGTT | 1 cut(s) | 537 |
| Psp5II | RGGWCCY | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 2 cut(s) | 596, 1243 |
| PspPI | GGNCC | 2 cut(s) | 595, 1079 |
| PspPPI | RGGWCCY | 1 cut(s) | 595 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 154, 186 |
| PstNI | CAGNNNCTG | 1 cut(s) | 584 |
| PvuII | CAGCTG | 1 cut(s) | 758 |
| RsaI | GTAC | 2 cut(s) | 150, 373 |
| RsaNI | GTAC | 2 cut(s) | 149, 372 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1114, 1340 |
| SacI | GAGCTC | 1 cut(s) | 40 |
| SaqAI | TTAA | 1 cut(s) | 246 |
| SatI | GCNGC | 4 cut(s) | 138, 393, 777, 1383 |
| Sau3AI | GATC | 3 cut(s) | 192, 410, 721 |
| Sau96I | GGNCC | 2 cut(s) | 595, 1079 |
| ScaI | AGTACT | 1 cut(s) | 373 |
| SchI | GAGTC | 5 cut(s) | 62, 197, 413, 617, 965 |
| SduI | GDGCHC | 1 cut(s) | 40 |
| SfaNI | GCATC | 3 cut(s) | 448, 1081, 1103 |
| SfcI | CTRYAG | 1 cut(s) | 1083 |
| SfuI | TTCGAA | 1 cut(s) | 1060 |
| SinI | GGWCC | 2 cut(s) | 595, 1079 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1114, 1340 |
| SmlI | CTYRAG | 3 cut(s) | 205, 794, 1010 |
| SmoI | CTYRAG | 3 cut(s) | 205, 794, 1010 |
| SpeI | ACTAGT | 1 cut(s) | 374 |
| Sse9I | AATT | 2 cut(s) | 763, 783 |
| SsiI | CCGC | 3 cut(s) | 30, 138, 1331 |
| SspMI | CTAG | 5 cut(s) | 12, 375, 503, 530, 1172 |
| SstI | GAGCTC | 1 cut(s) | 40 |
| StyI | CCWWGG | 1 cut(s) | 502 |
| TaaI | ACNGT | 2 cut(s) | 569, 1374 |
| TaiI | ACGT | 2 cut(s) | 540, 743 |
| TaqI | TCGA | 5 cut(s) | 66, 123, 191, 863, 1060 |
| TaqII | GACCGA | 1 cut(s) | 123 |
| TasI | AATT | 2 cut(s) | 763, 783 |
| TatI | WGTACW | 1 cut(s) | 371 |
| TauI | GCSGC | 1 cut(s) | 140 |
| Tru1I | TTAA | 1 cut(s) | 246 |
| Tru9I | TTAA | 1 cut(s) | 246 |
| TscAI | CASTG | 2 cut(s) | 1261, 1377 |
| TseFI | GTSAC | 1 cut(s) | 1129 |
| TseI | GCWGC | 3 cut(s) | 392, 776, 1382 |
| Tsp45I | GTSAC | 1 cut(s) | 1129 |
| TspDTI | ATGAA | 4 cut(s) | 318, 323, 677, 1008 |
| TspRI | CASTG | 2 cut(s) | 1261, 1377 |
| VpaK11BI | GGWCC | 2 cut(s) | 595, 1079 |
| XapI | RAATTY | 1 cut(s) | 763 |
| XceI | RCATGY | 3 cut(s) | 514, 625, 1235 |
| XmaJI | CCTAGG | 1 cut(s) | 502 |
| XmiI | GTMKAC | 2 cut(s) | 573, 890 |
| XspI | CTAG | 5 cut(s) | 12, 375, 503, 530, 1172 |
| ZraI | GACGTC | 1 cut(s) | 741 |
| ZrmI | AGTACT | 1 cut(s) | 373 |
| Zsp2I | ATGCAT | 1 cut(s) | 1096 |