Rorug05G0071600

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
6159021 .. 6164955
5935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0071600.1

Sequence Viewer

Length: 1410 bp
ATGGAGACCCCTAGCAGTAAGAGAACCACCGCCGGAGCTCTGGAAGAGAACATCTTGGCCATCCTCGACTCCACCGAAGCCGACGACACTCACTACGCCAACGACGACCGAACTGCTTTCCTCGACGCCGTTCGTGCCGCTTCGCTTGTACCCGAAAATGGAACTCCACCTACCTATAAATGGTTTGAGTCGATCTTCGCCATCTTGAGGATTGGGAAATCTCTGGAGCTGACTATGGCAAGTTTTAAGCTTTTGAATGAGTTGGATAAGCGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGTCCAATAAAGTCATGTTCAATGAGGCTTGGTCGCCATTTGTTTTCAGCTCCGAAAGTACTAGTAGCGAGAGGGAAGCTGCTAATAACTTGGGGGGATCAGTTGACTCCTCTGGTTTCCAACATTTGATAGAAGACCTTGCTGATGCAAGTGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGTCCCTAGGAAACATGTTGCTGTTTCAATACCTAGTCAACGTTCTTGAAGGAGATTTTCAACCTCGCAACTGTGTCTACGCAGAAACTGCAAACTGGGTCCTTCTGAGAGAGTCTTTGCTCAACATGCTTTTGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGCTTGGCCATTATGTGTAAGCTGTATCAAACCAATGCTGGATTTGCTGATGATCTAATAAGTTCAGAGACGTCTGTGGCACAACCAGCTGAAAATTTTGATACGGCTGCAACAATTGCTTTACTTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGGTTTTCAATGAACCTAAATGGAAGCTTGAGATAGTTGTGCAGTATTTGTGGAAATACATTGGTAAGCCTTCTGTTCGAACTCGTAGAGCAAATGGTCCTACAGATGATGCATCATTCAATGGAGCATTGAAGTGCTTTTCAAATGTCACCAGCACAAAAACCACCATAAAAAAGATTAGGCCAGAACTAGCTCAGTTGCTTTTAGCACATGGCCTTCAGGCTCACTTATCCTTACCATGTAAACAACATGTCAAAGGCACCTCTGCTTCCAGTGAAGAAAGAAGTAACAGCTCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCGGACACGAAGATGGAGATTTTGCCACTTGGAAAAGAAGCACTGTTTATGGCAGCTACTATCATATCAGCGCAGTCATAG

Protein Analysis

469

Amino Acids

52.02

Weight (kDa)

5.21

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 1241
AccI GTMKAC 2 cut(s) 573, 890
AciI CCGC 3 cut(s) 30, 138, 1331
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 2 cut(s) 57, 675
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 3 cut(s) 965, 1184, 1343
AcyI GRCGYC 2 cut(s) 126, 740
AfaI GTAC 2 cut(s) 150, 373
AfiI CCNNNNNNNGG 3 cut(s) 158, 180, 207
AflIII ACRYGT 2 cut(s) 510, 1231
AhlI ACTAGT 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 4 cut(s) 57, 675, 1163, 1195
ApeKI GCWGC 3 cut(s) 392, 776, 1382
ApoI RAATTY 1 cut(s) 763
AspA2I CCTAGG 1 cut(s) 502
AspLEI GCGC 1 cut(s) 1402
AspS9I GGNCC 2 cut(s) 595, 1079
AsuHPI GGTGA 1 cut(s) 1123
AsuII TTCGAA 1 cut(s) 1060
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 2 cut(s) 595, 1079
AvrII CCTAGG 1 cut(s) 502
BalI TGGCCA 2 cut(s) 59, 677
BanI GGYRCC 1 cut(s) 1241
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 453, 875, 1331
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 379, 763, 1394
BccI CCATC 4 cut(s) 68, 209, 899, 1336
BceAI ACGGC 2 cut(s) 113, 789
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BcoDI GTCTC 1 cut(s) 731
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 5 cut(s) 12, 375, 503, 530, 1172
BfmI CTRYAG 1 cut(s) 1083
BisI GCNGC 4 cut(s) 138, 393, 777, 1383
BlnI CCTAGG 1 cut(s) 502
BlsI GCNGC 4 cut(s) 139, 394, 778, 1384
BmcAI AGTACT 1 cut(s) 373
Bme18I GGWCC 2 cut(s) 595, 1079
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 595, 1079
BmiI GGNNCC 2 cut(s) 596, 1243
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 3 cut(s) 448, 1081, 1103
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 3 cut(s) 453, 875, 1331
BpmI CTGGAG 2 cut(s) 245, 947
Bpu14I TTCGAA 1 cut(s) 1060
BpuEI CTTGAG 3 cut(s) 226, 815, 1031
BsaHI GRCGYC 2 cut(s) 126, 740
BsaJI CCNNGG 2 cut(s) 278, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 180, 207
Bse1I ACTGG 2 cut(s) 596, 1254
BseDI CCNNGG 2 cut(s) 278, 502
BseGI GGATG 2 cut(s) 60, 946
BseLI CCNNNNNNNGG 3 cut(s) 158, 180, 207
BseMII CTCAG 4 cut(s) 501, 593, 1190, 1284
BseNI ACTGG 2 cut(s) 596, 1254
BseRI GAGGAG 2 cut(s) 412, 909
BseXI GCAGC 3 cut(s) 379, 763, 1394
BsgI GTGCAG 1 cut(s) 1043
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 677, 1165, 1197
BshNI GGYRCC 1 cut(s) 1241
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 3 cut(s) 158, 180, 207
BsmAI GTCTC 1 cut(s) 731
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 4 cut(s) 59, 677, 1165, 1197
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 192, 410, 721
BspACI CCGC 3 cut(s) 30, 138, 1331
BspANI GGCC 4 cut(s) 59, 677, 1165, 1197
BspCNI CTCAG 4 cut(s) 500, 594, 1189, 1285
BspLI GGNNCC 2 cut(s) 596, 1243
BspPI GGATC 1 cut(s) 418
BspT104I TTCGAA 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 1241
BsrI ACTGG 2 cut(s) 596, 1254
BssECI CCNNGG 2 cut(s) 278, 502
BssMI GATC 3 cut(s) 192, 410, 721
BssNI GRCGYC 2 cut(s) 126, 740
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 569, 1374
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 2 cut(s) 126, 740
BstAPI GCANNNNNTGC 2 cut(s) 584, 785
BstBI TTCGAA 1 cut(s) 1060
BstDEI CTNAG 4 cut(s) 487, 602, 1176, 1293
BstF5I GGATG 2 cut(s) 60, 946
BstHHI GCGC 1 cut(s) 1402
BstKTI GATC 3 cut(s) 195, 413, 724
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 3 cut(s) 192, 410, 721
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 6 cut(s) 134, 584, 622, 713, 755, 785
BstNSI RCATGY 3 cut(s) 514, 625, 1235
BstSFI CTRYAG 1 cut(s) 1083
BstV1I GCAGC 3 cut(s) 379, 763, 1394
BstV2I GAAGAC 3 cut(s) 453, 875, 1331
BsuRI GGCC 4 cut(s) 59, 677, 1165, 1197
BtsCI GGATG 2 cut(s) 60, 946
BtsIMutI CAGTG 2 cut(s) 1261, 1370
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 1 cut(s) 1402
Cfr13I GGNCC 2 cut(s) 595, 1079
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 149, 372
CviAII CATG 7 cut(s) 328, 511, 622, 823, 1193, 1221, 1232
CviQI GTAC 2 cut(s) 149, 372
DdeI CTNAG 4 cut(s) 487, 602, 1176, 1293
DpnI GATC 3 cut(s) 194, 412, 723
DpnII GATC 3 cut(s) 192, 410, 721
EaeI YGGCCR 2 cut(s) 57, 675
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 595, 1079
Eco53kI GAGCTC 1 cut(s) 38
Eco57I CTGAAG 3 cut(s) 965, 1184, 1343
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 502
EcoT22I ATGCAT 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 7 cut(s) 331, 514, 625, 826, 1196, 1224, 1235
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FaqI GGGAC 1 cut(s) 484
FatI CATG 7 cut(s) 327, 510, 621, 822, 1192, 1220, 1231
FblI GTMKAC 2 cut(s) 573, 890
Fnu4HI GCNGC 4 cut(s) 138, 393, 777, 1383
FokI GGATG 2 cut(s) 47, 953
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 138, 393, 777, 1383
FspBI CTAG 5 cut(s) 12, 375, 503, 530, 1172
GlaI GCGC 1 cut(s) 1401
GluI GCNGC 4 cut(s) 138, 393, 777, 1383
GsuI CTGGAG 2 cut(s) 245, 947
HaeIII GGCC 4 cut(s) 59, 677, 1165, 1197
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 1402
Hin1I GRCGYC 2 cut(s) 126, 740
Hin1II CATG 7 cut(s) 331, 514, 625, 826, 1196, 1224, 1235
Hin6I GCGC 1 cut(s) 1400
HinP1I GCGC 1 cut(s) 1400
HincII GTYRAC 2 cut(s) 418, 535
HindII GTYRAC 2 cut(s) 418, 535
HindIII AAGCTT 2 cut(s) 248, 1007
HinfI GANTC 5 cut(s) 68, 188, 419, 608, 971
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 1123
Hpy166II GTNNAC 5 cut(s) 418, 535, 574, 891, 1226
Hpy188I TCNGA 8 cut(s) 367, 490, 603, 736, 837, 914, 1294, 1323
Hpy188III TCNNGA 7 cut(s) 41, 205, 224, 542, 636, 938, 968
Hpy8I GTNNAC 5 cut(s) 418, 535, 574, 891, 1226
Hpy99I CGWCG 3 cut(s) 86, 107, 128
HpyAV CCTTC 5 cut(s) 539, 608, 658, 1062, 1208
HpyCH4III ACNGT 2 cut(s) 569, 1374
HpyCH4IV ACGT 2 cut(s) 537, 740
HpyCH4V TGCA 9 cut(s) 286, 461, 587, 779, 826, 883, 1024, 1094, 1310
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 584, 622, 713, 755, 785
HpyF3I CTNAG 4 cut(s) 487, 602, 1176, 1293
HpySE526I ACGT 2 cut(s) 537, 740
Hsp92I GRCGYC 2 cut(s) 126, 740
Hsp92II CATG 7 cut(s) 331, 514, 625, 826, 1196, 1224, 1235
HspAI GCGC 1 cut(s) 1400
Kzo9I GATC 3 cut(s) 192, 410, 721
LmnI GCTCC 6 cut(s) 35, 226, 368, 850, 1106, 1280
Lsp1109I GCAGC 3 cut(s) 379, 763, 1394
LweI GCATC 3 cut(s) 448, 1081, 1103
MaeI CTAG 5 cut(s) 12, 375, 503, 530, 1172
MaeII ACGT 2 cut(s) 537, 740
MaeIII GTNAC 2 cut(s) 1129, 1268
MalI GATC 3 cut(s) 194, 412, 723
MboI GATC 3 cut(s) 192, 410, 721
MboII GAAGA 9 cut(s) 56, 187, 458, 877, 880, 971, 1271, 1336, 1351
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 2 cut(s) 59, 677
MluCI AATT 2 cut(s) 763, 783
MluNI TGGCCA 2 cut(s) 59, 677
MlyI GAGTC 5 cut(s) 62, 197, 413, 617, 965
MmeI TCCRAC 2 cut(s) 243, 457
Mox20I TGGCCA 2 cut(s) 59, 677
Mph1103I ATGCAT 1 cut(s) 1096
MscI TGGCCA 2 cut(s) 59, 677
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 1114, 1340
Msp20I TGGCCA 2 cut(s) 59, 677
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 783
MwoI GCNNNNNNNGC 6 cut(s) 134, 584, 622, 713, 755, 785
NdeII GATC 3 cut(s) 192, 410, 721
NlaIII CATG 7 cut(s) 331, 514, 625, 826, 1196, 1224, 1235
NlaIV GGNNCC 2 cut(s) 596, 1243
NmuCI GTSAC 1 cut(s) 1129
NsiI ATGCAT 1 cut(s) 1096
NspI RCATGY 3 cut(s) 514, 625, 1235
NspV TTCGAA 1 cut(s) 1060
PciI ACATGT 2 cut(s) 510, 1231
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 102
PkrI GCNGC 4 cut(s) 139, 394, 778, 1384
PleI GAGTC 5 cut(s) 62, 196, 413, 616, 965
PpsI GAGTC 5 cut(s) 62, 196, 413, 616, 965
PpuMI RGGWCCY 1 cut(s) 595
PscI ACATGT 2 cut(s) 510, 1231
Psp124BI GAGCTC 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 596, 1243
PspPI GGNCC 2 cut(s) 595, 1079
PspPPI RGGWCCY 1 cut(s) 595
PsrI GAACNNNNNNTAC 2 cut(s) 154, 186
PstNI CAGNNNCTG 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 150, 373
RsaNI GTAC 2 cut(s) 149, 372
RseI CAYNNNNRTG 2 cut(s) 1114, 1340
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 4 cut(s) 138, 393, 777, 1383
Sau3AI GATC 3 cut(s) 192, 410, 721
Sau96I GGNCC 2 cut(s) 595, 1079
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 5 cut(s) 62, 197, 413, 617, 965
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 3 cut(s) 448, 1081, 1103
SfcI CTRYAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 1060
SinI GGWCC 2 cut(s) 595, 1079
SmiMI CAYNNNNRTG 2 cut(s) 1114, 1340
SmlI CTYRAG 3 cut(s) 205, 794, 1010
SmoI CTYRAG 3 cut(s) 205, 794, 1010
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 2 cut(s) 763, 783
SsiI CCGC 3 cut(s) 30, 138, 1331
SspMI CTAG 5 cut(s) 12, 375, 503, 530, 1172
SstI GAGCTC 1 cut(s) 40
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 569, 1374
TaiI ACGT 2 cut(s) 540, 743
TaqI TCGA 5 cut(s) 66, 123, 191, 863, 1060
TaqII GACCGA 1 cut(s) 123
TasI AATT 2 cut(s) 763, 783
TatI WGTACW 1 cut(s) 371
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 1261, 1377
TseFI GTSAC 1 cut(s) 1129
TseI GCWGC 3 cut(s) 392, 776, 1382
Tsp45I GTSAC 1 cut(s) 1129
TspDTI ATGAA 4 cut(s) 318, 323, 677, 1008
TspRI CASTG 2 cut(s) 1261, 1377
VpaK11BI GGWCC 2 cut(s) 595, 1079
XapI RAATTY 1 cut(s) 763
XceI RCATGY 3 cut(s) 514, 625, 1235
XmaJI CCTAGG 1 cut(s) 502
XmiI GTMKAC 2 cut(s) 573, 890
XspI CTAG 5 cut(s) 12, 375, 503, 530, 1172
ZraI GACGTC 1 cut(s) 741
ZrmI AGTACT 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.