Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Forward (+)

16949863 .. 16952420

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGCAGCAATCCAAGGACCCATTCGAAGCCGCGTTCGAGGAGCAAGACGACTCGCCGCCCGATTCTCCGGCCGCCGTCGACGCCATACGCGCCGCCCTCGACGAAGACTATGACGAGGGTCTCCCCCCTGAAGACCCACCTTCCTCATCCACACCATCAACCGCCGCAGCAGCAGCAGCAACCACCACCACAACCACCGTAGCCACTGTAACTCCCGCAACCAAAACCCTAACCAAGAAAAGCTCAGCAAAGCCAACTCCAGCCTCCTCGGCTCGGGCCACGAAGCAGAGCCAGCAGAACAAAGAGGAGGATGATGACGAAGACGAAGACAACGTCGATGTGGAGCTGGGGAAGTATCCGGCGACCGGCGACCCTGTGAAAATGGCGAAGATGCAGGCTATTTTATCACGATTCTCAGAGGAGCAGATGAGTAGATATGAGTCTTTTCGGAGAGCTGGGTTTCAGAAATCCAACATGAAAAGGTTGCTAGCAAGCATCAGTGGAACCCCGAAAATATCGGTGCCAATGACTATTGTAGTTTCAGGGATAGCAAAGATGTTTGTTGGTGAACTTGTTGAAACAGCCAGAATGGTTATGTCAGAGAGGAGAGAATCTGGGCCAATTCGACCATGCCACATTAGAGAATCCTATCGAAGATTAAAGCTGGAAGGCAAAGTTCCCAAGAGATCAGTCTCAAGGCTCTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

6.05

Isoelectric Point (pI)

74.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	135 - 220	2.8e-32	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	35, 93
AciI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 219
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	276, 368
AgsI	TTSAA	1 cut(s)	581
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	246, 349, 458, 667
AluI	AGCT	4 cut(s)	246, 349, 458, 667
Alw26I	GTCTC	2 cut(s)	128, 700
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	72, 279, 620
ApeKI	GCWGC	5 cut(s)	7, 170, 173, 176, 179
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	19, 279, 620
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	27
AsuNHI	GCTAGC	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	523
BbsI	GAAGAC	4 cut(s)	114, 141, 330, 336
BbvI	GCAGC	5 cut(s)	19, 182, 185, 188, 191
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	128, 700
BfaI	CTAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	3 cut(s)	19, 279, 620
BmiI	GGNNCC	3 cut(s)	21, 508, 525
BmsI	GCATC	2 cut(s)	384, 507
BmtI	GCTAGC	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	4 cut(s)	114, 141, 330, 336
BpmI	CTGGAG	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	682
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	15, 270
BsaWI	WCCGGW	1 cut(s)	708
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 368
Bse118I	RCCGGY	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	15, 270
BseGI	GGATG	2 cut(s)	149, 319
BseLI	CCNNNNNNNGG	2 cut(s)	276, 368
BseMII	CTCAG	2 cut(s)	261, 432
BseRI	GAGGAG	5 cut(s)	56, 259, 323, 437, 622
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	5 cut(s)	19, 182, 185, 188, 191
BseYI	CCCAGC	2 cut(s)	349, 458
Bsh1236I	CGCG	2 cut(s)	35, 93
Bsh1285I	CGRYCG	2 cut(s)	75, 369
BshFI	GGCC	3 cut(s)	74, 281, 622
BshNI	GGYRCC	1 cut(s)	523
BsiEI	CGRYCG	2 cut(s)	75, 369
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	4 cut(s)	71, 362, 369, 709
BslI	CCNNNNNNNGG	2 cut(s)	276, 368
BsmAI	GTCTC	2 cut(s)	128, 700
BsnI	GGCC	3 cut(s)	74, 281, 622
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	689
Bsp1720I	GCTNAGC	1 cut(s)	247
BspACI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 219
BspANI	GGCC	3 cut(s)	74, 281, 622
BspCNI	CTCAG	2 cut(s)	260, 431
BspFNI	CGCG	2 cut(s)	35, 93
BspLI	GGNNCC	3 cut(s)	21, 508, 525
BspOI	GCTAGC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	710
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	15, 270
BssMI	GATC	1 cut(s)	689
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	202, 211
Bst6I	CTCTTC	1 cut(s)	710
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	296, 399, 492, 496
BstDEI	CTNAG	2 cut(s)	247, 418
BstF5I	GGATG	2 cut(s)	149, 319
BstFNI	CGCG	2 cut(s)	35, 93
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	692
BstMAI	GTCTC	2 cut(s)	128, 700
BstMBI	GATC	1 cut(s)	689
BstMCI	CGRYCG	2 cut(s)	75, 369
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 92, 173, 176, 179, 272, 295
BstPAI	GACNNNNGTC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	35, 93
BstV1I	GCAGC	5 cut(s)	19, 182, 185, 188, 191
BstV2I	GAAGAC	4 cut(s)	114, 141, 330, 336
BstZI	CGGCCG	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	74, 281, 622
BtsCI	GGATG	2 cut(s)	149, 319
BtsIMutI	CAGTG	2 cut(s)	207, 508
Cac8I	GCNNGC	4 cut(s)	296, 399, 492, 496
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	19, 279, 620
CseI	GACGC	1 cut(s)	92
CviAII	CATG	2 cut(s)	478, 633
DdeI	CTNAG	2 cut(s)	247, 418
DpnI	GATC	1 cut(s)	691
DpnII	GATC	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	481, 636
FaiI	YATR	6 cut(s)	89, 114, 441, 479, 599, 634
FatI	CATG	2 cut(s)	477, 632
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	2 cut(s)	136, 326
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	94
GsaI	CCCAGC	2 cut(s)	353, 462
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	74, 281, 622
HapII	CCGG	4 cut(s)	71, 362, 369, 709
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	481, 636
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	6 cut(s)	53, 65, 414, 443, 614, 647
HpaII	CCGG	4 cut(s)	71, 362, 369, 709
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	82, 572
Hpy188I	TCNGA	4 cut(s)	421, 453, 468, 604
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	82, 572
Hpy99I	CGWCG	4 cut(s)	83, 86, 107, 341
HpyAV	CCTTC	2 cut(s)	153, 665
HpyCH4III	ACNGT	2 cut(s)	202, 211
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 92, 173, 176, 179, 272, 295
HpyF3I	CTNAG	2 cut(s)	247, 418
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	481, 636
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	689
LguI	GCTCTTC	1 cut(s)	710
LmnI	GCTCC	3 cut(s)	43, 346, 424
Lsp1109I	GCAGC	5 cut(s)	19, 182, 185, 188, 191
LweI	GCATC	2 cut(s)	384, 507
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	691
MboI	GATC	1 cut(s)	689
MboII	GAAGA	7 cut(s)	119, 146, 335, 341, 403, 669, 697
MluCI	AATT	1 cut(s)	624
MlyI	GAGTC	2 cut(s)	47, 452
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	1 cut(s)	662
MspI	CCGG	4 cut(s)	71, 362, 369, 709
MvnI	CGCG	2 cut(s)	35, 93
MwoI	GCNNNNNNNGC	7 cut(s)	83, 92, 173, 176, 179, 272, 295
NdeII	GATC	1 cut(s)	689
NheI	GCTAGC	1 cut(s)	490
NlaIII	CATG	2 cut(s)	481, 636
NlaIV	GGNNCC	3 cut(s)	21, 508, 525
NmeAIII	GCCGAG	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	4 cut(s)	65, 414, 614, 647
PflFI	GACNNNGTC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	47, 451
PpsI	GAGTC	2 cut(s)	47, 451
PpuMI	RGGWCCY	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	349, 458
PspN4I	GGNNCC	3 cut(s)	21, 508, 525
PspPI	GGNCC	3 cut(s)	19, 279, 620
PspPPI	RGGWCCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	335
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	662
Sau3AI	GATC	1 cut(s)	689
Sau96I	GGNCC	3 cut(s)	19, 279, 620
SchI	GAGTC	2 cut(s)	47, 452
SetI	ASST	7 cut(s)	145, 248, 339, 351, 460, 488, 669
SfaNI	GCATC	2 cut(s)	384, 507
SfuI	TTCGAA	1 cut(s)	27
SgrDI	CGTCGACG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	1 cut(s)	624
SsiI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 219
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	202, 211
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	7 cut(s)	27, 39, 81, 102, 339, 628, 655
TasI	AATT	1 cut(s)	624
TauI	GCSGC	5 cut(s)	35, 61, 77, 98, 170
TfiI	GAWTC	4 cut(s)	65, 414, 614, 647
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	2 cut(s)	214, 508
TseI	GCWGC	5 cut(s)	7, 170, 173, 176, 179
TspDTI	ATGAA	2 cut(s)	17, 494
TspRI	CASTG	2 cut(s)	214, 508
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.