Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Forward (+)

10953540 .. 10955076

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGCATTCAAAGGATCCGTTTGAAGCAGCGATTGAGGAAGAGCAAGAGGAATCGCCACCGGAATCACCCGTTGGCGGAGGAGGAGGAGGTGATGGTAGTGAAGACGGACGAATTGAAATCGACCAGACTCAAGATGAAGATGAGAGACCTGTGGATGTTCGCCGTCCGATGAAGAAAGCTAAAACCTCTGTTGTTGTTACTGAAGCTAAGAACAAAGATAAAGATGAAGATGATGAAGAAGAGGAAGAGAATATGGATGTTGAGCTTACTAAATATCCAACTAGTTCTGATCCTGCTAAAATGGCCAAAATGCAAACCATATTATCGCAATTCACTGAGGATCAGATGAGTAGATATGAATCTTTTAGGAGATCTGCACTTCAAAGACCACAGATGAAGAAGTTATTGATAGGTGTCACTGGTAGTCAGAAGATTGGTATGCCAATGATTATTGTTGCGTGTGGTATTGCAAAGATGTTCGTTGGTGAACTCGTTGAAACAGCTCGAGTTGTTATGGCGGAAAGGAAAGAATCAGGACCTATCAGACCTTGTCATATCAGGGAGTCTTATCGGAGACTAAAGCTCGAAGGAAAAGTGCCTAAAAGATCAGTTCCACGCCTTTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

210

Amino Acids

23.7

Weight (kDa)

5.39

Isoelectric Point (pI)

85.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	108 - 193	2.1e-31	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 521, 628
AclWI	GGATC	4 cut(s)	11, 24, 287, 351
AcoI	YGGCCR	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	5 cut(s)	12, 26, 119, 386, 500
AhlI	ACTAGT	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	5 cut(s)	182, 209, 268, 506, 586
AluI	AGCT	5 cut(s)	182, 209, 268, 506, 586
Alw26I	GTCTC	2 cut(s)	142, 571
AlwI	GGATC	4 cut(s)	11, 24, 287, 351
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	60, 104, 500
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	142, 571
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	285, 631
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	361
BseGI	GGATG	2 cut(s)	163, 265
BseJI	GATNNNNATC	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	96, 99, 102
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	142, 571
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	16, 292, 343, 374, 608
BspACI	CCGC	3 cut(s)	78, 521, 628
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	4 cut(s)	11, 24, 287, 351
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	427
BssMI	GATC	5 cut(s)	16, 292, 343, 374, 608
Bst6I	CTCTTC	3 cut(s)	36, 237, 243
BstDEI	CTNAG	2 cut(s)	210, 339
BstF5I	GGATG	2 cut(s)	163, 265
BstKTI	GATC	5 cut(s)	19, 295, 346, 377, 611
BstMAI	GTCTC	2 cut(s)	142, 571
BstMBI	GATC	5 cut(s)	16, 292, 343, 374, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 627
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	16, 374
BstYI	RGATCY	2 cut(s)	16, 374
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	163, 265
BtsIMutI	CAGTG	2 cut(s)	336, 420
Cfr13I	GGNCC	1 cut(s)	539
CviJI	RGCY	6 cut(s)	182, 209, 268, 308, 506, 586
CviKI_1	RGCY	6 cut(s)	182, 209, 268, 308, 506, 586
DdeI	CTNAG	2 cut(s)	210, 339
DpnI	GATC	5 cut(s)	18, 294, 345, 376, 610
DpnII	GATC	5 cut(s)	16, 292, 343, 374, 608
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	3 cut(s)	36, 237, 243
EarI	CTCTTC	3 cut(s)	36, 237, 243
EciI	GGCGGA	2 cut(s)	93, 536
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	539
FaiI	YATR	6 cut(s)	257, 323, 360, 443, 518, 558
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	170, 272
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	285, 631
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	62
HinfI	GANTC	6 cut(s)	53, 65, 130, 362, 533, 566
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	60, 104, 500
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	6 cut(s)	171, 292, 348, 432, 548, 576
Hpy188III	TCNNGA	2 cut(s)	134, 537
Hpy8I	GTNNAC	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	584
HpyCH4V	TGCA	3 cut(s)	316, 380, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 627
HpyF3I	CTNAG	2 cut(s)	210, 339
Kzo9I	GATC	5 cut(s)	16, 292, 343, 374, 608
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	7 cut(s)	75, 140, 165, 309, 408, 522, 547
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	285, 631
MaeIII	GTNAC	2 cut(s)	199, 418
MalI	GATC	5 cut(s)	18, 294, 345, 376, 610
MboI	GATC	5 cut(s)	16, 292, 343, 374, 608
MflI	RGATCY	2 cut(s)	16, 374
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	114, 332
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	124, 575
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	31, 43, 74, 77, 80, 83, 199, 238, 334
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	305, 627
NdeII	GATC	5 cut(s)	16, 292, 343, 374, 608
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	4 cut(s)	53, 65, 362, 533
PflFI	GACNNNGTC	1 cut(s)	552
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	124, 574
PpsI	GAGTC	2 cut(s)	124, 574
PpuMI	RGGWCCY	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	539
PspPPI	RGGWCCY	1 cut(s)	539
PspXI	VCTCGAGB	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	16, 374
PsyI	GACNNNGTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	5 cut(s)	16, 292, 343, 374, 608
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	2 cut(s)	124, 575
Sfr274I	CTCGAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	132, 507
SmoI	CTYRAG	2 cut(s)	132, 507
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	2 cut(s)	114, 332
SsiI	CCGC	3 cut(s)	78, 521, 628
SspMI	CTAG	2 cut(s)	285, 631
TaqI	TCGA	3 cut(s)	123, 508, 588
TasI	AATT	2 cut(s)	114, 332
TfiI	GAWTC	4 cut(s)	53, 65, 362, 533
TscAI	CASTG	2 cut(s)	343, 427
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	7 cut(s)	17, 153, 188, 243, 252, 375, 413
TspGWI	ACGGA	2 cut(s)	9, 123
TspRI	CASTG	2 cut(s)	343, 427
Tth111I	GACNNNGTC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	507
XspI	CTAG	2 cut(s)	285, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.