Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Forward (+)

16268963 .. 16271817

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAGCAGCAATCCAAGGACCCATTCGAAGCCGCGTTCGAGGAGCAAGACGACTCACCGCCCGATTCTCCGGCCGCCTTCGACGCCATACGCGCCGCCCTCGACGAAGACTATGACGAGGGTCTCCCCCCTGAAGACCCACCATCCTCATCCACACCATCAACCGCCGCAGCAGCAGCAACCACCACCACAACCACCGTGGCCACTGTAACTCCCGCAACCAAAACCCTAACCAAGAAAAGCTCAGCAAAGCCAACTCCAGCCTCCTCGGCTCGGGCCACGAAGCAGAGCCAGCAGAACAAAGAGGAGGATGATGACGAAGACGAAGACAACGTCGATGTGGAGCTGGGGAAGTATCCGGCGACCGGCGACCCTGTGAAAATGGCGAAGATGCAGGCTATTTTATCACGATTCTCGGAGGAGCAGATGAGTAGATATGAGTCTTTTCGGAGAGCTGGGTTTCAGAAATCCAACATGAAAAGGTTGCTAGCAAGCATCAGTGGAACCCCGAAAATATCAGTGCCAATGACTATTGTAGTTTCAGGGATAGCAAAGATGTTTGTTGGTGAACTTGTTGAAACAGCCAGAATGGTTATGTCAGAGAGGAGAGAATCTGGACCAATTCGACCATGCCACATTAGAGAATCCTATCGAAGATTAAAGCTGGAAGGCAAAGTTCCCAAGAGATCAGTCTCAAGGCTCTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

236

Amino Acids

25.91

Weight (kDa)

6.05

Isoelectric Point (pI)

75.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII28	PF04719	134 - 219	2.8e-32	hTAFII28-like protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	35, 93
AciI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 216
AcoI	YGGCCR	2 cut(s)	72, 201
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	273, 365
AgsI	TTSAA	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	243, 346, 455, 664
AluI	AGCT	4 cut(s)	243, 346, 455, 664
Alw26I	GTCTC	2 cut(s)	128, 697
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	72, 201, 276
ApeKI	GCWGC	4 cut(s)	7, 170, 173, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	19, 276, 617
AsuHPI	GGTGA	2 cut(s)	48, 578
AsuII	TTCGAA	1 cut(s)	27
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	19, 617
BalI	TGGCCA	1 cut(s)	203
BbsI	GAAGAC	4 cut(s)	114, 141, 327, 333
BbvI	GCAGC	4 cut(s)	19, 182, 185, 188
BccI	CCATC	2 cut(s)	151, 166
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	128, 697
BfaI	CTAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	8 cut(s)	8, 33, 75, 96, 168, 171, 174, 177
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	8 cut(s)	9, 34, 76, 97, 169, 172, 175, 178
Bme18I	GGWCC	2 cut(s)	19, 617
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	19, 276, 617
BmiI	GGNNCC	2 cut(s)	21, 505
BmsI	GCATC	2 cut(s)	381, 504
BmtI	GCTAGC	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	4 cut(s)	114, 141, 327, 333
BpmI	CTGGAG	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	15, 198, 267
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 365
Bse118I	RCCGGY	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	15, 198, 267
BseGI	GGATG	3 cut(s)	143, 149, 316
BseLI	CCNNNNNNNGG	2 cut(s)	273, 365
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	5 cut(s)	56, 256, 320, 434, 619
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	19, 182, 185, 188
BseYI	CCCAGC	2 cut(s)	346, 455
Bsh1236I	CGCG	2 cut(s)	35, 93
Bsh1285I	CGRYCG	2 cut(s)	75, 366
BshFI	GGCC	3 cut(s)	74, 203, 278
BsiEI	CGRYCG	2 cut(s)	75, 366
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	71, 359, 366, 706
BslI	CCNNNNNNNGG	2 cut(s)	273, 365
BsmAI	GTCTC	2 cut(s)	128, 697
BsnI	GGCC	3 cut(s)	74, 203, 278
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	686
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 216
BspANI	GGCC	3 cut(s)	74, 203, 278
BspCNI	CTCAG	1 cut(s)	257
BspFNI	CGCG	2 cut(s)	35, 93
BspLI	GGNNCC	2 cut(s)	21, 505
BspOI	GCTAGC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	15, 198, 267
BssMI	GATC	1 cut(s)	686
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	199, 208
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	293, 396, 489, 493
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	143, 149, 316
BstFNI	CGCG	2 cut(s)	35, 93
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	689
BstMAI	GTCTC	2 cut(s)	128, 697
BstMBI	GATC	1 cut(s)	686
BstMCI	CGRYCG	2 cut(s)	75, 366
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 173, 176, 269, 292
BstPAI	GACNNNNGTC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	35, 93
BstV1I	GCAGC	4 cut(s)	19, 182, 185, 188
BstV2I	GAAGAC	4 cut(s)	114, 141, 327, 333
BstZI	CGGCCG	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	74, 203, 278
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	143, 149, 316
BtsIMutI	CAGTG	3 cut(s)	204, 505, 525
Cac8I	GCNNGC	4 cut(s)	293, 396, 489, 493
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	19, 276, 617
CseI	GACGC	1 cut(s)	92
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	475, 630
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	688
DpnII	GATC	1 cut(s)	686
EaeI	YGGCCR	2 cut(s)	72, 201
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	19, 617
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	478, 633
FaiI	YATR	6 cut(s)	89, 114, 438, 476, 596, 631
FatI	CATG	2 cut(s)	474, 629
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	8 cut(s)	8, 33, 75, 96, 168, 171, 174, 177
FokI	GGATG	3 cut(s)	130, 136, 323
Fsp4HI	GCNGC	8 cut(s)	8, 33, 75, 96, 168, 171, 174, 177
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	8 cut(s)	8, 33, 75, 96, 168, 171, 174, 177
GsaI	CCCAGC	2 cut(s)	350, 459
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	74, 203, 278
HapII	CCGG	4 cut(s)	71, 359, 366, 706
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	478, 633
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	6 cut(s)	53, 65, 411, 440, 611, 644
HpaII	CCGG	4 cut(s)	71, 359, 366, 706
HphI	GGTGA	2 cut(s)	48, 578
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	418, 450, 465, 601
Hpy188III	TCNNGA	2 cut(s)	408, 615
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	3 cut(s)	86, 107, 338
HpyAV	CCTTC	2 cut(s)	88, 662
HpyCH4III	ACNGT	2 cut(s)	199, 208
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 173, 176, 269, 292
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	478, 633
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	686
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	3 cut(s)	43, 343, 421
Lsp1109I	GCAGC	4 cut(s)	19, 182, 185, 188
LweI	GCATC	2 cut(s)	381, 504
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	688
MboI	GATC	1 cut(s)	686
MboII	GAAGA	7 cut(s)	119, 146, 332, 338, 400, 666, 694
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	621
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	47, 449
MmeI	TCCRAC	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	659
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	4 cut(s)	71, 359, 366, 706
MvnI	CGCG	2 cut(s)	35, 93
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 173, 176, 269, 292
NdeII	GATC	1 cut(s)	686
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	478, 633
NlaIV	GGNNCC	2 cut(s)	21, 505
NmeAIII	GCCGAG	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	65, 411, 611, 644
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	8 cut(s)	9, 34, 76, 97, 169, 172, 175, 178
PleI	GAGTC	2 cut(s)	47, 448
PpsI	GAGTC	2 cut(s)	47, 448
PpuMI	RGGWCCY	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	346, 455
PspN4I	GGNNCC	2 cut(s)	21, 505
PspPI	GGNCC	3 cut(s)	19, 276, 617
PspPPI	RGGWCCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	8 cut(s)	8, 33, 75, 96, 168, 171, 174, 177
Sau3AI	GATC	1 cut(s)	686
Sau96I	GGNCC	3 cut(s)	19, 276, 617
SchI	GAGTC	2 cut(s)	47, 449
SetI	ASST	6 cut(s)	245, 336, 348, 457, 485, 666
SfaNI	GCATC	2 cut(s)	381, 504
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	2 cut(s)	19, 617
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	7 cut(s)	33, 59, 75, 96, 165, 168, 216
SspMI	CTAG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	199, 208
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	7 cut(s)	27, 39, 81, 102, 336, 625, 652
TasI	AATT	1 cut(s)	621
TauI	GCSGC	4 cut(s)	35, 77, 98, 170
TfiI	GAWTC	4 cut(s)	65, 411, 611, 644
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	3 cut(s)	211, 505, 525
TseI	GCWGC	4 cut(s)	7, 170, 173, 176
TspDTI	ATGAA	2 cut(s)	17, 491
TspRI	CASTG	3 cut(s)	211, 505, 525
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	19, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.