Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009171

Physical Location & Seq

Genomic Coordinates Forward (+)

6587683 .. 6591120

Gene Structure 3438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAGCAGCAATCCAAGGACCCATTCGAAGCGGCGTTTGAGGAGCAAGAAGACTCGCCGCCAGATTCTCCCGCGGCTCCTGATGCCGCACGCACCGCTCCCGACACCCAAGAAGACGACGACCCTCTTCTTCTTCCTCCTGGCTCCAAAGACCCATCTTCCTCAGCCACGCCATTAGCGGCACCGCCACCACCACCACCAACAACAGCAGTAACTACAGCAAGAACAACACCTGCTGCTACTACAGCCGCGCCCTCTACCTCTGCTCGGGCCGTAGTCAAGCACAACAAAGATGATGACGACGACGAAGATGAAGAGAACATGGATGTTGAGCTCGGCAAGTTCTCTGCCACTGGCGACCCTGACAAAATGGCCAAGATGCAGGCTATCTTATCACGATTCTCGGAGGAACAGATGAGTAGGTACGAGTCATTTCGGAGAGCTGGGTTTCAGAAATCCAACATGAAAAGGTTGTTAGGTAGCATCAGTGGAACTCCAAAAATTTCTATGCCTATGACAATTGTAGTGTCAGGGATAGCAAAGATGTTTGTTGGTGAACTGGTTGAAACAGCCAGAATAGTTATGACAGAGAGGAAAGAATCTGGGCCAATCAGGCCATGCCACATTAGAGAAGCATATAGAAGATTGAAGCTTGAAGGGAAGGTACCAAAGAGATCCATGTCCAGGCTCTTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TAFII28

Protein Analysis

233

Amino Acids

25.35

Weight (kDa)

5.61

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20000 AT4G20280
fragaria_vesca	FvH4_3g13420 FvH4_3g13420 FvH4_3g13420
malus_domestica	MD10G1223700.v1.1
prunus_persica	Prupe.4G121600_v2.0.a1
pyrus_communis	pycom10g18760
rosa_chinensis	RchiOBHm_Chr5g0022151
rosa_laevigata	RLG00000032648
rosa_multiflora	Rmu_co8448675.1_g000001 Rmu_sc0006966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056780
rosa_rugosa	Rorug05G0071600 Rorug05G0071700 Rorug05G0071800 Rorug05G0071900
rosa_samantha	Rh5AG159700 Rh5BG159200 Rh5CG173400 Rh5DG159200
rosa_wichuraiana	Rw5G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	2 cut(s)	181, 664
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	2 cut(s)	74, 251
AciI	CCGC	9 cut(s)	32, 59, 72, 74, 87, 96, 179, 185, 249
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	2 cut(s)	425, 666
AfiI	CCNNNNNNNGG	2 cut(s)	267, 684
AgsI	TTSAA	3 cut(s)	566, 649, 656
AjnI	CCWGG	2 cut(s)	139, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	334, 443, 652
AluI	AGCT	3 cut(s)	334, 443, 652
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	4 cut(s)	270, 372, 605, 614
ApeKI	GCWGC	2 cut(s)	7, 236
ApoI	RAATTY	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	19, 270, 605
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	181, 664
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BbsI	GAAGAC	2 cut(s)	57, 120
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	19, 223
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	141, 685
BfmI	CTRYAG	2 cut(s)	216, 243
BfuAI	ACCTGC	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	613
BisI	GCNGC	8 cut(s)	8, 33, 59, 75, 87, 180, 237, 249
BlsI	GCNGC	8 cut(s)	9, 34, 60, 76, 88, 181, 238, 250
Bme1390I	CCNGG	2 cut(s)	141, 685
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	3 cut(s)	19, 270, 605
BmiI	GGNNCC	5 cut(s)	21, 78, 145, 183, 666
BmrFI	CCNGG	2 cut(s)	141, 685
BmsI	GCATC	3 cut(s)	73, 369, 492
BpiI	GAAGAC	2 cut(s)	57, 120
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	15, 72
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 684
Bse1I	ACTGG	2 cut(s)	358, 564
BseBI	CCWGG	2 cut(s)	141, 685
BseDI	CCNNGG	2 cut(s)	15, 72
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	267, 684
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	358, 564
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	19, 223
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	74, 251
BshFI	GGCC	4 cut(s)	272, 374, 607, 616
BshNI	GGYRCC	2 cut(s)	181, 664
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	267, 684
BsnI	GGCC	4 cut(s)	272, 374, 607, 616
BsoBI	CYCGRG	1 cut(s)	267
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	674
BspACI	CCGC	9 cut(s)	32, 59, 72, 74, 87, 96, 179, 185, 249
BspANI	GGCC	4 cut(s)	272, 374, 607, 616
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	74, 251
BspLI	GGNNCC	5 cut(s)	21, 78, 145, 183, 666
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	2 cut(s)	181, 664
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	358, 564
BssECI	CCNNGG	2 cut(s)	15, 72
BssMI	GATC	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	141, 685
Bst6I	CTCTTC	3 cut(s)	132, 309, 695
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	91, 384
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	2 cut(s)	74, 251
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	677
BstMBI	GATC	1 cut(s)	674
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 95, 245, 613
BstNI	CCWGG	2 cut(s)	141, 685
BstSCI	CCNGG	2 cut(s)	139, 683
BstSFI	CTRYAG	2 cut(s)	216, 243
BstUI	CGCG	2 cut(s)	74, 251
BstV1I	GCAGC	2 cut(s)	19, 223
BstV2I	GAAGAC	2 cut(s)	57, 120
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	4 cut(s)	272, 374, 607, 616
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	351, 493
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	91, 384
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	19, 270, 605
Cfr42I	CCGCGG	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	424, 665
CviAII	CATG	4 cut(s)	322, 463, 618, 679
CviQI	GTAC	2 cut(s)	424, 665
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	676
DpnII	GATC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	3 cut(s)	132, 309, 695
EarI	CTCTTC	3 cut(s)	132, 309, 695
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	139, 683
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	325, 466, 621, 682
FaiI	YATR	9 cut(s)	323, 464, 509, 515, 584, 619, 637, 639, 680
FatI	CATG	4 cut(s)	321, 462, 617, 678
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	8 cut(s)	8, 33, 59, 75, 87, 180, 237, 249
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	8 cut(s)	8, 33, 59, 75, 87, 180, 237, 249
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	8 cut(s)	8, 33, 59, 75, 87, 180, 237, 249
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	272, 374, 607, 616
HapII	CCGG	1 cut(s)	694
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	4 cut(s)	325, 466, 621, 682
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	53, 65, 399, 428, 599
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	3 cut(s)	406, 438, 453
Hpy188III	TCNNGA	3 cut(s)	80, 101, 396
Hpy8I	GTNNAC	1 cut(s)	557
Hpy99I	CGWCG	3 cut(s)	122, 305, 308
HpyAV	CCTTC	2 cut(s)	650, 655
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 95, 245, 613
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	4 cut(s)	325, 466, 621, 682
HspAI	GCGC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	668
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	674
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	4 cut(s)	43, 82, 103, 149
Lsp1109I	GCAGC	2 cut(s)	19, 223
LweI	GCATC	3 cut(s)	73, 369, 492
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	676
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	1 cut(s)	674
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	501, 519
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	47, 437
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	8 cut(s)	34, 135, 147, 172, 265, 271, 400, 585
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	2 cut(s)	141, 685
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	141, 685
MvnI	CGCG	2 cut(s)	74, 251
MwoI	GCNNNNNNNGC	4 cut(s)	83, 95, 245, 613
NdeII	GATC	1 cut(s)	674
NlaIII	CATG	4 cut(s)	325, 466, 621, 682
NlaIV	GGNNCC	5 cut(s)	21, 78, 145, 183, 666
NmeAIII	GCCGAG	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	65, 399, 599
PkrI	GCNGC	8 cut(s)	9, 34, 60, 76, 88, 181, 238, 250
PleI	GAGTC	2 cut(s)	47, 436
PpsI	GAGTC	2 cut(s)	47, 436
PpuMI	RGGWCCY	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	139, 683
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	2 cut(s)	139, 683
PspN4I	GGNNCC	5 cut(s)	21, 78, 145, 183, 666
PspPI	GGNCC	3 cut(s)	19, 270, 605
PspPPI	RGGWCCY	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	2 cut(s)	425, 666
RsaNI	GTAC	2 cut(s)	424, 665
SacI	GAGCTC	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	695
SatI	GCNGC	8 cut(s)	8, 33, 59, 75, 87, 180, 237, 249
Sau3AI	GATC	1 cut(s)	674
Sau96I	GGNCC	3 cut(s)	19, 270, 605
SchI	GAGTC	2 cut(s)	47, 437
ScrFI	CCNGG	2 cut(s)	141, 685
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	235, 263, 336, 425, 445, 473, 481, 654, 666
SfaNI	GCATC	3 cut(s)	73, 369, 492
SfcI	CTRYAG	2 cut(s)	216, 243
SfiI	GGCCNNNNNGGCC	1 cut(s)	613
Sfr303I	CCGCGG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	2 cut(s)	501, 519
SsiI	CCGC	9 cut(s)	32, 59, 72, 74, 87, 96, 179, 185, 249
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	139, 683
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	501, 519
TauI	GCSGC	6 cut(s)	35, 61, 77, 89, 182, 251
TfiI	GAWTC	3 cut(s)	65, 399, 599
TscAI	CASTG	2 cut(s)	358, 493
TseI	GCWGC	2 cut(s)	7, 236
TspDTI	ATGAA	3 cut(s)	17, 327, 479
TspRI	CASTG	2 cut(s)	358, 493
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.