Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Reverse (-)

7042046 .. 7043392

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCTCAGTAACCTCAGCCACCGTTGCAATCCCATCTTTCACCGGCCTTAAAGCCTCAACCATCAAATCATCCGCCACCGTCAGAATCCAAACTGCTGCTGTTGCATCACCGAAGCTTACAGTGAAGTCATCTCTAAAGAACTTCGGAGTCGCGGCCGTAGCGGCTGCAGCTTCAATTGCTTTGGCCGGAAACGCCATGGCAATAGAAGTTCTCTTGGGAGGAGGGGATGGGTCGTTAGCTTTTATTCCCAACGACTTCTCTATAGCTAAAGGAGAGAAGATTGTGTTCAAGAACAACGCTGGATACCCACACAATGTTGTCTTCGATGAAGACGAGATCCCAAGTGGCGTCGACGTGGCCAAGATCTCGATGGACGAGCAAGATCTACTCAACGGTGCGGGAGAGACGTACGAGGTTGCTTTGACCGAGCCAGGGACTTACAGCTTCTACTGTGCGCCACATCAGGGTGCTGGTATGGTCGGTAAAGTCACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

167

Amino Acids

16.98

Weight (kDa)

5.06

Isoelectric Point (pI)

19.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	70 - 167	1.8e-36	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	75, 155, 164, 401
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	3 cut(s)	156, 186, 360
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	435, 467
AgsI	TTSAA	2 cut(s)	177, 292
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	5 cut(s)	118, 173, 242, 269, 447
AluI	AGCT	5 cut(s)	118, 173, 242, 269, 447
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	5 cut(s)	3, 46, 156, 186, 360
ApeKI	GCWGC	3 cut(s)	98, 167, 170
AspLEI	GCGC	1 cut(s)	460
AsuHPI	GGTGA	3 cut(s)	34, 102, 484
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	2 cut(s)	316, 339
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	85, 154, 182
BccI	CCATC	4 cut(s)	43, 71, 224, 367
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	168, 264
BfuI	GTATCC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	164
BglII	AGATCT	2 cut(s)	366, 385
BisI	GCNGC	5 cut(s)	99, 156, 165, 168, 171
BlsI	GCNGC	5 cut(s)	100, 157, 166, 169, 172
Bme1390I	CCNGG	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	316, 339
Bpu10I	CCTNAGC	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	198, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 467
Bse118I	RCCGGY	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	198, 434
BseGI	GGATG	2 cut(s)	71, 235
BseLI	CCNNNNNNNGG	2 cut(s)	435, 467
BseMII	CTCAG	2 cut(s)	21, 30
BseRI	GAGGAG	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	85, 154, 182
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	5 cut(s)	5, 48, 158, 188, 362
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	45, 189
BsiWI	CGTACG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	435, 467
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	5 cut(s)	5, 48, 158, 188, 362
Bsp143I	GATC	3 cut(s)	339, 366, 385
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	4 cut(s)	75, 155, 164, 401
BspANI	GGCC	5 cut(s)	5, 48, 158, 188, 362
BspCNI	CTCAG	2 cut(s)	20, 29
BspFNI	CGCG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	198, 434
BssMI	GATC	3 cut(s)	339, 366, 385
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	6 cut(s)	25, 82, 124, 398, 455, 496
BstACI	GRCGYC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	7, 16
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	71, 235
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	3 cut(s)	342, 369, 388
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	3 cut(s)	339, 366, 385
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 104, 161, 164, 170, 179, 194
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	168, 264
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	85, 154, 182
BstV2I	GAAGAC	2 cut(s)	316, 339
BstX2I	RGATCY	3 cut(s)	339, 366, 385
BstYI	RGATCY	3 cut(s)	339, 366, 385
BstZI	CGGCCG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	5 cut(s)	5, 48, 158, 188, 362
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	71, 235
BtsIMutI	CAGTG	1 cut(s)	129
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	44
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	7, 16
DpnI	GATC	3 cut(s)	341, 368, 387
DpnII	GATC	3 cut(s)	339, 366, 385
EaeI	YGGCCR	3 cut(s)	156, 186, 360
EagI	CGGCCG	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	200, 266, 479
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	99, 156, 165, 168, 171
FokI	GGATG	2 cut(s)	58, 242
Fsp4HI	GCNGC	5 cut(s)	99, 156, 165, 168, 171
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	99, 156, 165, 168, 171
HaeIII	GGCC	5 cut(s)	5, 48, 158, 188, 362
HapII	CCGG	2 cut(s)	45, 189
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	2 cut(s)	355, 499
HindII	GTYRAC	2 cut(s)	355, 499
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	87, 150
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	45, 189
HphI	GGTGA	3 cut(s)	34, 102, 484
Hpy166II	GTNNAC	2 cut(s)	355, 499
Hpy188I	TCNGA	2 cut(s)	86, 149
Hpy188III	TCNNGA	2 cut(s)	292, 370
Hpy8I	GTNNAC	2 cut(s)	355, 499
Hpy99I	CGWCG	2 cut(s)	356, 359
HpyCH4III	ACNGT	6 cut(s)	25, 82, 124, 398, 455, 496
HpyCH4IV	ACGT	2 cut(s)	357, 410
HpyCH4V	TGCA	3 cut(s)	29, 107, 170
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 104, 161, 164, 170, 179, 194
HpyF3I	CTNAG	2 cut(s)	7, 16
HpySE526I	ACGT	2 cut(s)	357, 410
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	458
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	339, 366, 385
LpnPI	CCDG	7 cut(s)	58, 202, 288, 420, 447, 452, 459
Lsp1109I	GCAGC	3 cut(s)	85, 154, 182
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	2 cut(s)	357, 410
MaeIII	GTNAC	2 cut(s)	10, 490
MalI	GATC	3 cut(s)	341, 368, 387
MboI	GATC	3 cut(s)	339, 366, 385
MboII	GAAGA	3 cut(s)	292, 316, 344
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	3 cut(s)	339, 366, 385
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	16, 25, 67, 215, 218, 409
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	2 cut(s)	51, 498
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	2 cut(s)	45, 189
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	7 cut(s)	26, 104, 161, 164, 170, 179, 194
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	3 cut(s)	339, 366, 385
NlaIII	CATG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	87
Pfl23II	CGTACG	1 cut(s)	411
PkrI	GCNGC	5 cut(s)	100, 157, 166, 169, 172
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspLI	CGTACG	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	3 cut(s)	339, 366, 385
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	51, 498
SatI	GCNGC	5 cut(s)	99, 156, 165, 168, 171
Sau3AI	GATC	3 cut(s)	339, 366, 385
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	9 cut(s)	17, 120, 175, 244, 271, 360, 413, 420, 449
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	2 cut(s)	168, 264
SgrDI	CGTCGACG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	4 cut(s)	75, 155, 164, 401
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	6 cut(s)	25, 82, 124, 398, 455, 496
TaiI	ACGT	2 cut(s)	360, 413
TaqI	TCGA	3 cut(s)	327, 354, 371
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	1 cut(s)	177
TauI	GCSGC	2 cut(s)	158, 167
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	51, 498
Tru9I	TTAA	2 cut(s)	51, 498
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	98, 167, 170
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.