Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Forward (+)

47537987 .. 47542211

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGGACACATACGAAGAAACCAACAAGGACACGGAGGTCGCTCCTGCACTCATCGCAGTCCACCCGACCCAGAATTCGGTTGCACTCGCAATCGGGTCGGACCTTCGCGTCTTCAACCTTATTGGGGGTTGTGCGGTGTCTTTGGTGGAAAATTCTGGTGGGGCACTTCATAAAGATTCCATAAGAGCCATTCGGTACGGAGCAAGTGGGAAGTTATTTGTGTCTGCTGGTGATGATAAACTTGTCAAGATATGGTCAACTGAATCTTGGCATTGCATTAGTACTGTGTGCTCAGAGAAAAGAGTGACTGCAGTTGCCATAAGCAACGATGGTTCCTATATTTGTTTTGCTGACAAATTTGGGGTTGTTTGGGTTGTGGATGTGGATGTGGAGGGCTTTGATGGAAACCAAGCGTCTGCTAACAAAAAGGCAGCACCTATGCTTTCTCACTATTGTAGTATCATAACAAGCCTGGAGTTTTCTCCTGATGGACGATTTTTTGTCAGTGCTGATCGGGATTTCAAAATTCGTGTTACTGTGTTTCCCATGAAGCCTCTAGATGGAGCCCATGAGATACAAAGTTTTGCACTTGGTCATACAGAATTTGTTTCCTGCCTTGCCTCTGTTTACACTCAGGAATTCCCCCACGGTTTTCTTGTCTCTGGAAGTGGTGATTCAACTGTTCGCCTATGGGATATTTCCTCAGGATCTCTTTTAGATACTTGTGATATTAGAGACAAGGCAGGACCTTCGGAGTTTAAAGGAATAGAAGAAGAGTGCTGTTCTGCAGTAACTGATTTATGCACCATCCCAGATAGTACACTTGTTGCAGTGGCTGTACAAAGTTTGCAAGGGATTATATTGTTGAGATGTGATCTTTCTGCTCGAACACTCAATGTTGCCAAGGTGGTATCTATCAAGGGAGATACATTTATTCCTACAAGCCTGGCAACTAGTGTATCCTCGGGATTATTGTGGATGGTAACAGGTGCCTCTAACTTGGGTGATCTTGAAAGCCCCTCTTTGGCTCGTGTCAGGGTTATCTCTGACTTTAAGAAAACCAGTCCTGATGTTGTTCAGCAAGGGCCAACTGTTTTGGAAGATGATGAGACCCCTGGGGGCGAGAAATTGCTCGAAAAATTGCAGGGAAGAGTGTCCATTGACGAAAAGGTTTTCTTGACAGCAGCTGAGGCTTTGAAAACATCCATGAGCAAATTACTAATAAAGAAGCAGTACTCTACAGAGAGAAGAGAATTTAGAAAGAGAGGTAGAAATGATAAGAAACTCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

432

Amino Acids

46.77

Weight (kDa)

5.44

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	20 - 179	9.3e-09	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	24 - 246	3.1e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	35 - 183	8.9e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	57 - 130	4.3e-11	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	57 - 248	6.2e-13	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	58 - 118	7.1e-08	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	58 - 117	5.4e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	70 - 180	5.1e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	71 - 240	1.8e-09	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	148 - 243	1.5e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	153 - 242	5.7e-08	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	156 - 245	1.2e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	38, 110
AccB1I	GGYRCC	1 cut(s)	992
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
AfaI	GTAC	5 cut(s)	200, 286, 823, 843, 1238
AfiI	CCNNNNNNNGG	4 cut(s)	79, 127, 563, 1027
AgsI	TTSAA	5 cut(s)	118, 526, 681, 1016, 1201
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	3 cut(s)	474, 948, 1117
AluBI	AGCT	1 cut(s)	1190
AluI	AGCT	1 cut(s)	1190
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	3 cut(s)	667, 732, 1106
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	3 cut(s)	797, 839, 1190
Ama87I	CYCGRG	1 cut(s)	967
AoxI	GGCC	1 cut(s)	1088
ApeKI	GCWGC	2 cut(s)	434, 1187
ApoI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	3 cut(s)	103, 749, 1088
AsuHPI	GGTGA	3 cut(s)	245, 686, 1019
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	2 cut(s)	103, 749
AxyI	CCTNAGG	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	945, 978
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	2 cut(s)	446, 1199
BccI	CCATC	6 cut(s)	326, 398, 485, 557, 818, 976
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 735, 769
BciT130I	CCWGG	3 cut(s)	476, 950, 1119
BciVI	GTATCC	1 cut(s)	973
BcoDI	GTCTC	3 cut(s)	667, 732, 1106
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	560, 957
BfmI	CTRYAG	3 cut(s)	312, 789, 1242
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	2 cut(s)	435, 1188
BlsI	GCNGC	2 cut(s)	436, 1189
BmcAI	AGTACT	2 cut(s)	286, 1238
Bme1390I	CCNGG	3 cut(s)	476, 950, 1119
Bme18I	GGWCC	2 cut(s)	103, 749
BmeT110I	CYCGRG	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	103, 749, 1088
BmiI	GGNNCC	3 cut(s)	337, 568, 994
BmrFI	CCNGG	3 cut(s)	476, 950, 1119
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	1191
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 127, 563, 1027
Bse1I	ACTGG	1 cut(s)	1065
Bse21I	CCTNAGG	1 cut(s)	706
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	476, 950, 1119
BseDI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
BseGI	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BseLI	CCNNNNNNNGG	4 cut(s)	79, 127, 563, 1027
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	4 cut(s)	309, 650, 720, 1182
BseNI	ACTGG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	446, 1199
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	1090
BshNI	GGYRCC	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	967
BslI	CCNNNNNNNGG	4 cut(s)	79, 127, 563, 1027
BsmAI	GTCTC	3 cut(s)	667, 732, 1106
BsnI	GGCC	1 cut(s)	1090
Bso31I	GGTCTC	1 cut(s)	1106
BsoBI	CYCGRG	1 cut(s)	967
Bsp1286I	GDGCHC	3 cut(s)	169, 296, 571
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	514, 710, 877, 1009
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	1090
BspCNI	CTCAG	4 cut(s)	308, 649, 719, 1183
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	337, 568, 994
BspMAI	CTGCAG	2 cut(s)	316, 793
BspPI	GGATC	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	1065
BssECI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
BssMI	GATC	4 cut(s)	514, 710, 877, 1009
BssSI	CACGAG	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	1032
Bst2UI	CCWGG	3 cut(s)	476, 950, 1119
Bst4CI	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
Bst6I	CTCTTC	3 cut(s)	771, 1147, 1246
BstAUI	TGTACA	1 cut(s)	841
BstDEI	CTNAG	4 cut(s)	295, 636, 706, 1191
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	4 cut(s)	517, 713, 880, 1012
BstMAI	GTCTC	3 cut(s)	667, 732, 1106
BstMBI	GATC	4 cut(s)	514, 710, 877, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 1193
BstNI	CCWGG	3 cut(s)	476, 950, 1119
BstSCI	CCNGG	3 cut(s)	474, 948, 1117
BstSFI	CTRYAG	3 cut(s)	312, 789, 1242
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	446, 1199
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
Bsu36I	CCTNAGG	1 cut(s)	706
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	1 cut(s)	1090
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	514, 840
CaiI	CAGNNNCTG	3 cut(s)	797, 839, 1190
Cfr13I	GGNCC	3 cut(s)	103, 749, 1088
CseI	GACGC	2 cut(s)	100, 405
Csp6I	GTAC	5 cut(s)	199, 285, 822, 842, 1237
CviAII	CATG	3 cut(s)	550, 572, 1210
CviQI	GTAC	5 cut(s)	199, 285, 822, 842, 1237
DdeI	CTNAG	4 cut(s)	295, 636, 706, 1191
DpnI	GATC	4 cut(s)	516, 712, 879, 1011
DpnII	GATC	4 cut(s)	514, 710, 877, 1009
DraI	TTTAAA	1 cut(s)	763
DrdI	GACNNNNNNGTC	2 cut(s)	38, 110
DseDI	GACNNNNNNGTC	2 cut(s)	38, 110
Eam1104I	CTCTTC	3 cut(s)	771, 1147, 1246
EarI	CTCTTC	3 cut(s)	771, 1147, 1246
Eco130I	CCWWGG	1 cut(s)	906
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	1106
Eco47I	GGWCC	2 cut(s)	103, 749
Eco81I	CCTNAGG	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	2 cut(s)	76, 641
EcoRII	CCWGG	3 cut(s)	474, 948, 1117
EcoT14I	CCWWGG	1 cut(s)	906
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	3 cut(s)	553, 575, 1213
FalI	AAGNNNNNCTT	4 cut(s)	1009, 1041, 1163, 1195
FatI	CATG	3 cut(s)	549, 571, 1209
Fnu4HI	GCNGC	2 cut(s)	435, 1188
FokI	GGATG	5 cut(s)	395, 401, 797, 994, 1192
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	435, 1188
FspBI	CTAG	2 cut(s)	560, 957
GluI	GCNGC	2 cut(s)	435, 1188
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	1090
HgaI	GACGC	2 cut(s)	100, 405
Hin1II	CATG	3 cut(s)	553, 575, 1213
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	179, 266, 677
HphI	GGTGA	3 cut(s)	245, 686, 1019
Hpy166II	GTNNAC	4 cut(s)	64, 261, 631, 824
Hpy188I	TCNGA	4 cut(s)	103, 298, 757, 1051
Hpy8I	GTNNAC	4 cut(s)	64, 261, 631, 824
HpyAV	CCTTC	2 cut(s)	116, 762
HpyCH4III	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 1193
HpyF3I	CTNAG	4 cut(s)	295, 636, 706, 1191
Hsp92II	CATG	3 cut(s)	553, 575, 1213
Kzo9I	GATC	4 cut(s)	514, 710, 877, 1009
LmnI	GCTCC	3 cut(s)	49, 203, 566
Lsp1109I	GCAGC	2 cut(s)	446, 1199
MaeI	CTAG	2 cut(s)	560, 957
MaeIII	GTNAC	4 cut(s)	307, 535, 793, 985
MalI	GATC	4 cut(s)	516, 712, 879, 1011
MboI	GATC	4 cut(s)	514, 710, 877, 1009
MboII	GAAGA	7 cut(s)	29, 106, 785, 788, 1115, 1164, 1263
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	3 cut(s)	169, 296, 571
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	2 cut(s)	762, 1056
MspA1I	CMGCKG	1 cut(s)	1190
MspR9I	CCNGG	3 cut(s)	476, 950, 1119
MvaI	CCWGG	3 cut(s)	476, 950, 1119
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	56, 1193
NdeII	GATC	4 cut(s)	514, 710, 877, 1009
NlaIII	CATG	3 cut(s)	553, 575, 1213
NlaIV	GGNNCC	3 cut(s)	337, 568, 994
NmuCI	GTSAC	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	1118
PfeI	GAWTC	3 cut(s)	179, 266, 677
PkrI	GCNGC	2 cut(s)	436, 1189
PpuMI	RGGWCCY	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	474, 948, 1117
PspGI	CCWGG	3 cut(s)	474, 948, 1117
PspN4I	GGNNCC	3 cut(s)	337, 568, 994
PspPI	GGNCC	3 cut(s)	103, 749, 1088
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	2 cut(s)	316, 793
PstNI	CAGNNNCTG	3 cut(s)	797, 839, 1190
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	5 cut(s)	200, 286, 823, 843, 1238
RsaNI	GTAC	5 cut(s)	199, 285, 822, 842, 1237
SaqAI	TTAA	2 cut(s)	762, 1056
SatI	GCNGC	2 cut(s)	435, 1188
Sau3AI	GATC	4 cut(s)	514, 710, 877, 1009
Sau96I	GGNCC	3 cut(s)	103, 749, 1088
ScaI	AGTACT	2 cut(s)	286, 1238
ScrFI	CCNGG	3 cut(s)	476, 950, 1119
SduI	GDGCHC	3 cut(s)	169, 296, 571
SfcI	CTRYAG	3 cut(s)	312, 789, 1242
SinI	GGWCC	2 cut(s)	103, 749
SpeI	ACTAGT	1 cut(s)	956
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	560, 957
StyD4I	CCNGG	3 cut(s)	474, 948, 1117
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
TaqI	TCGA	2 cut(s)	889, 1137
TatI	WGTACW	4 cut(s)	284, 821, 841, 1236
TfiI	GAWTC	3 cut(s)	179, 266, 677
Tru1I	TTAA	2 cut(s)	762, 1056
Tru9I	TTAA	2 cut(s)	762, 1056
TscAI	CASTG	2 cut(s)	514, 840
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	434, 1187
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	161, 566
TspGWI	ACGGA	2 cut(s)	50, 216
TspRI	CASTG	2 cut(s)	514, 840
VpaK11BI	GGWCC	2 cut(s)	103, 749
XapI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
XbaI	TCTAGA	1 cut(s)	559
XspI	CTAG	2 cut(s)	560, 957
ZrmI	AGTACT	2 cut(s)	286, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.