Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Forward (+)

283149 .. 283649

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTCCGTCACCCCCGCCGCCGTCACTATCCCATCATTCACCGGACTCAAGTCCTCCGGCGCAGCCAAGGTTGGCGCTGCCGTTAAGGTCTCAGCCTCCCCAAGGCAGATGTGCGTCGTCAAGTCATCCCTCAAGGATGTCGGTGTGGCCGTCGCCGCCACCGCAGCCAGCGCTATCCTCGCCAGTAATGCCATGGCCATTGAGGTCTTGCTCGGCAGCGATGACGGTGGCTTGGCCTTCGTCCCCAACAGCTTCTCCATCGCCCCCGGCGAGAAGATTGTGTTCAAGAACAATGCTGGATTCCCACACAACATTGTCTTCGACGAGGACGAGGTTCCTAGCGGTGTGGATGCCGGAAAGATCTCGATGAGCGAGGAGGACCTCCTGAATGCCCCCGGGGAGACCTACGCCATCACCTTGACCGAAAAAGGTTCATACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGCATGGTCGGTAAAGTTACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

167

Amino Acids

16.77

Weight (kDa)

5.06

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	69 - 166	8.2e-37	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	18, 21, 159, 165, 345
AcoI	YGGCCR	2 cut(s)	150, 198
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	105, 464
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	2 cut(s)	255, 470
AluI	AGCT	2 cut(s)	255, 470
Alw26I	GTCTC	2 cut(s)	97, 398
Ama87I	CYCGRG	1 cut(s)	398
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	4 cut(s)	3, 150, 198, 237
ApeKI	GCWGC	4 cut(s)	65, 80, 167, 219
AspLEI	GCGC	3 cut(s)	65, 80, 176
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	3 cut(s)	270, 399, 400
AsuHPI	GGTGA	4 cut(s)	4, 34, 409, 452
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	67, 77, 179, 231
BccI	CCATC	3 cut(s)	43, 269, 422
BceAI	ACGGC	3 cut(s)	8, 68, 137
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	3 cut(s)	270, 399, 400
BcoDI	GTCTC	2 cut(s)	97, 398
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	2 cut(s)	81, 177
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	6 cut(s)	21, 66, 81, 159, 168, 220
BlsI	GCNGC	6 cut(s)	22, 67, 82, 160, 169, 221
Bme1390I	CCNGG	4 cut(s)	270, 399, 400, 464
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	4 cut(s)	270, 399, 400, 464
BmsI	GCATC	1 cut(s)	343
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	313
BpuEI	CTTGAG	2 cut(s)	35, 119
BpuMI	CCSGG	3 cut(s)	270, 399, 400
BsaI	GGTCTC	2 cut(s)	97, 398
BsaJI	CCNNGG	8 cut(s)	69, 104, 195, 268, 397, 398, 399, 463
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 464
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	8 cut(s)	69, 104, 195, 268, 397, 398, 399, 463
BseGI	GGATG	3 cut(s)	128, 145, 358
BseLI	CCNNNNNNNGG	2 cut(s)	105, 464
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	392, 447
BseXI	GCAGC	4 cut(s)	67, 77, 179, 231
BshFI	GGCC	4 cut(s)	5, 152, 200, 239
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	5 cut(s)	45, 60, 270, 357, 399
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	105, 464
BsmAI	GTCTC	2 cut(s)	97, 398
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	5, 152, 200, 239
Bso31I	GGTCTC	2 cut(s)	97, 398
BsoBI	CYCGRG	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	5 cut(s)	18, 21, 159, 165, 345
BspANI	GGCC	4 cut(s)	5, 152, 200, 239
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	339
BspTNI	GGTCTC	2 cut(s)	97, 398
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	8 cut(s)	69, 104, 195, 268, 397, 398, 399, 463
BssMI	GATC	1 cut(s)	363
BssT1I	CCWWGG	3 cut(s)	69, 104, 195
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	230, 493
BstC8I	GCNNGC	2 cut(s)	172, 472
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	128, 145, 358
BstH2I	RGCGCY	2 cut(s)	81, 177
BstHHI	GCGC	3 cut(s)	65, 80, 176
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	97, 398
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 164, 167, 173, 182, 191
BstNI	CCWGG	1 cut(s)	464
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	4 cut(s)	268, 397, 398, 462
BstV1I	GCAGC	4 cut(s)	67, 77, 179, 231
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	4 cut(s)	5, 152, 200, 239
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	2 cut(s)	237, 247
BtsCI	GGATG	3 cut(s)	128, 145, 358
Cac8I	GCNNGC	2 cut(s)	172, 472
CfoI	GCGC	3 cut(s)	65, 80, 176
Cfr13I	GGNCC	1 cut(s)	382
Cfr9I	CCCGGG	1 cut(s)	398
CseI	GACGC	1 cut(s)	106
CviAII	CATG	2 cut(s)	196, 475
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	150, 198
Eco130I	CCWWGG	3 cut(s)	69, 104, 195
Eco31I	GGTCTC	2 cut(s)	97, 398
Eco47I	GGWCC	1 cut(s)	382
Eco47III	AGCGCT	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	69, 104, 195
ErhI	CCWWGG	3 cut(s)	69, 104, 195
FaeI	CATG	2 cut(s)	199, 478
FaiI	YATR	3 cut(s)	197, 439, 476
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	195, 474
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	6 cut(s)	21, 66, 81, 159, 168, 220
FokI	GGATG	3 cut(s)	115, 152, 365
Fsp4HI	GCNGC	6 cut(s)	21, 66, 81, 159, 168, 220
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	3 cut(s)	64, 79, 175
GluI	GCNGC	6 cut(s)	21, 66, 81, 159, 168, 220
HaeII	RGCGCY	2 cut(s)	81, 177
HaeIII	GGCC	4 cut(s)	5, 152, 200, 239
HapII	CCGG	5 cut(s)	45, 60, 270, 357, 399
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	65, 80, 176
Hin1II	CATG	2 cut(s)	199, 478
Hin6I	GCGC	3 cut(s)	63, 78, 174
HinP1I	GCGC	3 cut(s)	63, 78, 174
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	2 cut(s)	48, 303
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	5 cut(s)	45, 60, 270, 357, 399
HphI	GGTGA	4 cut(s)	4, 34, 409, 452
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188III	TCNNGA	3 cut(s)	289, 367, 388
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	3 cut(s)	122, 158, 329
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	230, 493
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 164, 167, 173, 182, 191
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	199, 478
HspAI	GCGC	3 cut(s)	63, 78, 174
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	4 cut(s)	67, 77, 179, 231
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	10, 25, 487
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	289, 313
MflI	RGATCY	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	87, 495
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	5 cut(s)	45, 60, 270, 357, 399
MspR9I	CCNGG	4 cut(s)	270, 399, 400, 464
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	6 cut(s)	158, 164, 167, 173, 182, 191
NciI	CCSGG	3 cut(s)	270, 399, 400
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	199, 478
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	10, 25
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 270, 330
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	6 cut(s)	22, 67, 82, 160, 169, 221
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	382
PshAI	GACNNNNGTC	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	87, 495
SatI	GCNGC	6 cut(s)	21, 66, 81, 159, 168, 220
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	4 cut(s)	270, 399, 400, 464
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	382
SmaI	CCCGGG	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	50, 134
SmoI	CTYRAG	2 cut(s)	50, 134
SsiI	CCGC	5 cut(s)	18, 21, 159, 165, 345
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	4 cut(s)	268, 397, 398, 462
StyI	CCWWGG	3 cut(s)	69, 104, 195
TaaI	ACNGT	2 cut(s)	230, 493
TaqI	TCGA	2 cut(s)	324, 368
TaqII	GACCGA	1 cut(s)	440
TauI	GCSGC	2 cut(s)	23, 161
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	87, 495
Tru9I	TTAA	2 cut(s)	87, 495
TseFI	GTSAC	2 cut(s)	10, 25
TseI	GCWGC	4 cut(s)	65, 80, 167, 219
Tsp45I	GTSAC	2 cut(s)	10, 25
TspDTI	ATGAA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.