Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Reverse (-)

61483297 .. 61483797

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG437600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCACCGTCACTCCTGCTGCCGTTGCCATTCCCTCATTCACCGGACTCAAGTCCGCCGGAGCAACCAAACTTGGCGCCACCTCCGTCAAGGTCTCAGCTGCAGTCCCAAGAATGAGCATCAAGTCCTCACTCAAGGACGTCGGTGTTGCAGTCGCTGCCACCGCCGCGAGTGCACTCCTCGCCAGCAATGCCTTGGCCATTGACATCCTTCTCGGCGGCAGCGATGGCTCCTTGGCTTTCGTCCCCAACGAGTTCTCCATCAGCCCCGGGGACAAGATCGTCTTCAAGAACAACGCTGGATTCCCACACAACGTTGTCTTCGACGAGGACGAGATTCCAGGGGGTGTTGATGCCGGGAAAATCTCCATGAGCGAGGAGGATCTCCTCAACGCCCCAGGAGAGACCTACTCCGTCACCTTGACTGAAAAAGGAACATACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGTATGTCCGGCAAGGTTACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

166

Amino Acids

16.72

Weight (kDa)

5.04

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	70 - 166	4.7e-37	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	57, 165, 168, 219
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	3, 198
AcyI	GRCGYC	2 cut(s)	78, 141
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	3 cut(s)	340, 397, 462
AluBI	AGCT	2 cut(s)	101, 470
AluI	AGCT	2 cut(s)	101, 470
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	100, 398
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	3, 198
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	4 cut(s)	20, 101, 158, 222
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	3 cut(s)	270, 271, 358
AsuHPI	GGTGA	3 cut(s)	34, 409, 452
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	178
BalI	TGGCCA	2 cut(s)	5, 200
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	277, 313
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	7, 88, 145, 234
BccI	CCATC	2 cut(s)	221, 269
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	3 cut(s)	342, 399, 464
BcnI	CCSGG	3 cut(s)	270, 271, 358
BcoDI	GTCTC	2 cut(s)	100, 398
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	6 cut(s)	21, 102, 159, 168, 220, 223
BlsI	GCNGC	6 cut(s)	22, 103, 160, 169, 221, 224
Bme1390I	CCNGG	6 cut(s)	270, 271, 342, 358, 399, 464
BmeT110I	CYCGRG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	79, 232
BmrFI	CCNGG	6 cut(s)	270, 271, 342, 358, 399, 464
BmsI	GCATC	2 cut(s)	129, 343
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	277, 313
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	2 cut(s)	35, 119
BpuMI	CCSGG	3 cut(s)	270, 271, 358
BsaHI	GRCGYC	2 cut(s)	78, 141
BsaI	GGTCTC	2 cut(s)	100, 398
BsaJI	CCNNGG	8 cut(s)	195, 234, 268, 269, 270, 341, 397, 463
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	342, 399, 464
BseDI	CCNNGG	8 cut(s)	195, 234, 268, 269, 270, 341, 397, 463
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	4 cut(s)	170, 377, 392, 447
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	7, 88, 145, 234
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	5, 200
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	5 cut(s)	45, 60, 270, 357, 480
BslFI	GGGAC	3 cut(s)	92, 230, 287
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	100, 398
BsmFI	GGGAC	3 cut(s)	92, 230, 287
BsnI	GGCC	2 cut(s)	5, 200
Bso31I	GGTCTC	2 cut(s)	100, 398
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	279, 382
BspACI	CCGC	4 cut(s)	57, 165, 168, 219
BspANI	GGCC	2 cut(s)	5, 200
BspCNI	CTCAG	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	79, 232
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	2 cut(s)	100, 398
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	8 cut(s)	195, 234, 268, 269, 270, 341, 397, 463
BssMI	GATC	2 cut(s)	279, 382
BssNI	GRCGYC	2 cut(s)	78, 141
BssT1I	CCWWGG	2 cut(s)	195, 234
Bst2UI	CCWGG	3 cut(s)	342, 399, 464
Bst4CI	ACNGT	2 cut(s)	10, 493
BstACI	GRCGYC	2 cut(s)	78, 141
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	282, 385
BstMAI	GTCTC	2 cut(s)	100, 398
BstMBI	GATC	2 cut(s)	279, 382
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
BstNI	CCWGG	3 cut(s)	342, 399, 464
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	6 cut(s)	268, 269, 340, 356, 397, 462
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	7, 88, 145, 234
BstV2I	GAAGAC	2 cut(s)	277, 313
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	5, 200
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	269
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	7 cut(s)	5, 101, 200, 231, 239, 267, 470
CviKI_1	RGCY	7 cut(s)	5, 101, 200, 231, 239, 267, 470
DdeI	CTNAG	1 cut(s)	97
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	2 cut(s)	281, 384
DpnII	GATC	2 cut(s)	279, 382
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	3, 198
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	195, 234
Eco31I	GGTCTC	2 cut(s)	100, 398
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	487
EcoRII	CCWGG	3 cut(s)	340, 397, 462
EcoT14I	CCWWGG	2 cut(s)	195, 234
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	195, 234
FaeI	CATG	1 cut(s)	373
FaiI	YATR	3 cut(s)	371, 439, 476
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	3 cut(s)	92, 230, 287
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	6 cut(s)	21, 102, 159, 168, 220, 223
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	21, 102, 159, 168, 220, 223
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	21, 102, 159, 168, 220, 223
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	5, 200
HapII	CCGG	5 cut(s)	45, 60, 270, 357, 480
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	78, 141
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	48, 303, 337
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	5 cut(s)	45, 60, 270, 357, 480
HphI	GGTGA	3 cut(s)	34, 409, 452
Hpy166II	GTNNAC	2 cut(s)	176, 496
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	176, 496
Hpy99I	CGWCG	2 cut(s)	146, 329
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	10, 493
HpyCH4IV	ACGT	2 cut(s)	141, 315
HpyCH4V	TGCA	3 cut(s)	104, 152, 176
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	2 cut(s)	141, 315
Hsp92I	GRCGYC	2 cut(s)	78, 141
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	279, 382
LmnI	GCTCC	3 cut(s)	62, 236, 467
Lsp1109I	GCAGC	4 cut(s)	7, 88, 145, 234
LweI	GCATC	2 cut(s)	129, 343
MaeII	ACGT	2 cut(s)	141, 315
MaeIII	GTNAC	3 cut(s)	10, 415, 487
MalI	GATC	2 cut(s)	281, 384
MboI	GATC	2 cut(s)	279, 382
MboII	GAAGA	2 cut(s)	277, 313
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	2 cut(s)	5, 200
MluNI	TGGCCA	2 cut(s)	5, 200
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	9 cut(s)	46, 94, 139, 191, 322, 370, 373, 398, 468
Mox20I	TGGCCA	2 cut(s)	5, 200
MscI	TGGCCA	2 cut(s)	5, 200
MseI	TTAA	1 cut(s)	495
Msp20I	TGGCCA	2 cut(s)	5, 200
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	5 cut(s)	45, 60, 270, 357, 480
MspR9I	CCNGG	6 cut(s)	270, 271, 342, 358, 399, 464
MvaI	CCWGG	3 cut(s)	342, 399, 464
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	3 cut(s)	270, 271, 358
NdeII	GATC	2 cut(s)	279, 382
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	79, 232
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	10, 415
PcsI	WCGNNNNNNNCGW	4 cut(s)	222, 249, 321, 330
PfeI	GAWTC	2 cut(s)	303, 337
PkrI	GCNGC	6 cut(s)	22, 103, 160, 169, 221, 224
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	42
PshAI	GACNNNNGTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	340, 397, 462
PspEI	GGTNACC	1 cut(s)	487
PspGI	CCWGG	3 cut(s)	340, 397, 462
PspN4I	GGNNCC	2 cut(s)	79, 232
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	6 cut(s)	21, 102, 159, 168, 220, 223
Sau3AI	GATC	2 cut(s)	279, 382
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	6 cut(s)	270, 271, 342, 358, 399, 464
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	9 cut(s)	86, 96, 103, 144, 318, 410, 422, 472, 489
SfaNI	GCATC	2 cut(s)	129, 343
SfcI	CTRYAG	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	79
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	50, 134
SmoI	CTYRAG	2 cut(s)	50, 134
SsiI	CCGC	4 cut(s)	57, 165, 168, 219
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	6 cut(s)	268, 269, 340, 356, 397, 462
StyI	CCWWGG	2 cut(s)	195, 234
TaaI	ACNGT	2 cut(s)	10, 493
TaiI	ACGT	2 cut(s)	144, 318
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	2 cut(s)	170, 222
TfiI	GAWTC	2 cut(s)	303, 337
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	10, 415
TseI	GCWGC	4 cut(s)	20, 101, 158, 222
Tsp45I	GTSAC	2 cut(s)	10, 415
TspGWI	ACGGA	2 cut(s)	76, 403
TspMI	CCCGGG	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.