Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Forward (+)

566896 .. 567396

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1007200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTTCGTCAACCCCGCCGCGGTCGCTATCCCATCATTCACCGGACTTAAATCCGCCGGCGCAGCCAAGGTTAACGCTGCAGCTAAGGTCTCAGCCTCCCCAAGGCAGATGTGCATCGTCAAGTCATCCCTCAAGGATGTTGGTGTGGCCGTTGCCGCCACTGCCGCCAGTGCTATCCTCGCCAGTAATGCCATGGCCATTGAGGTCTTGCTAGGCAGCGATGACGGTGGCTTAGCCTTTGTCCCCAACAGCTTCTCCATCGCCCCCGGTGAGAAGATTGTGTTCAAGAACAATGCTGGATTCCCACACAACGTTTTGTTTGACGAGGACGAGGTTCCCAGCGGTGTGGATGCTGGAAAAATCTCGATGAGCGAGGAGGACCTCCTGAATGCCCCCGGGGAAACCTACGCCATCACCTTGACCGAAAAAGGTTCATACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGCATGGTCGGCAAAGTTACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

167

Amino Acids

16.84

Weight (kDa)

5.06

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	69 - 166	2.3e-36	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	7 cut(s)	18, 21, 23, 57, 159, 168, 345
AclI	AACGTT	1 cut(s)	315
AcoI	YGGCCR	2 cut(s)	150, 198
AfiI	CCNNNNNNNGG	3 cut(s)	22, 105, 464
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	86, 255, 470
AluI	AGCT	3 cut(s)	86, 255, 470
Alw26I	GTCTC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	3, 150, 198
ApeKI	GCWGC	4 cut(s)	65, 80, 83, 219
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	3 cut(s)	270, 399, 400
AsuHPI	GGTGA	4 cut(s)	34, 284, 409, 452
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	67, 77, 95, 231
BccI	CCATC	3 cut(s)	43, 269, 422
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	3 cut(s)	270, 399, 400
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	7 cut(s)	21, 66, 81, 84, 159, 168, 220
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	7 cut(s)	22, 67, 82, 85, 160, 169, 221
Bme1390I	CCNGG	4 cut(s)	270, 399, 400, 464
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	4 cut(s)	270, 399, 400, 464
BmsI	GCATC	2 cut(s)	126, 343
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	3 cut(s)	270, 399, 400
BsaBI	GATNNNNATC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	9 cut(s)	21, 69, 104, 195, 268, 397, 398, 399, 463
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 105, 464
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	171, 186
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	9 cut(s)	21, 69, 104, 195, 268, 397, 398, 399, 463
BseGI	GGATG	3 cut(s)	128, 145, 358
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	3 cut(s)	22, 105, 464
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	171, 186
BseRI	GAGGAG	2 cut(s)	392, 447
BseXI	GCAGC	4 cut(s)	67, 77, 95, 231
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	5, 152, 200
BsiEI	CGRYCG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	4 cut(s)	45, 60, 270, 399
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	22, 105, 464
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	5, 152, 200
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	398
Bsp1720I	GCTNAGC	1 cut(s)	235
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	7 cut(s)	18, 21, 23, 57, 159, 168, 345
BspANI	GGCC	3 cut(s)	5, 152, 200
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	171, 186
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	9 cut(s)	21, 69, 104, 195, 268, 397, 398, 399, 463
BssT1I	CCWWGG	3 cut(s)	69, 104, 195
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	230, 493
BstC8I	GCNNGC	2 cut(s)	61, 472
BstDEI	CTNAG	3 cut(s)	87, 94, 235
BstDSI	CCRYGG	2 cut(s)	21, 195
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	128, 145, 358
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	1 cut(s)	97
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 65, 158, 164, 167, 173, 182, 191, 480
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	268, 397, 398, 462
BstSFI	CTRYAG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	4 cut(s)	67, 77, 95, 231
BstXI	CCANNNNNNTGG	2 cut(s)	349, 470
BsuRI	GGCC	3 cut(s)	5, 152, 200
BtgI	CCRYGG	2 cut(s)	21, 195
BtgZI	GCGATG	2 cut(s)	237, 247
BtsCI	GGATG	3 cut(s)	128, 145, 358
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 178
Cac8I	GCNNGC	2 cut(s)	61, 472
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	382
Cfr42I	CCGCGG	1 cut(s)	24
Cfr9I	CCCGGG	1 cut(s)	398
CviAII	CATG	2 cut(s)	196, 475
DdeI	CTNAG	3 cut(s)	87, 94, 235
EaeI	YGGCCR	2 cut(s)	150, 198
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	3 cut(s)	69, 104, 195
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	69, 104, 195
ErhI	CCWWGG	3 cut(s)	69, 104, 195
FaeI	CATG	2 cut(s)	199, 478
FaiI	YATR	3 cut(s)	197, 439, 476
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	195, 474
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	7 cut(s)	21, 66, 81, 84, 159, 168, 220
FokI	GGATG	3 cut(s)	115, 152, 365
Fsp4HI	GCNGC	7 cut(s)	21, 66, 81, 84, 159, 168, 220
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	7 cut(s)	21, 66, 81, 84, 159, 168, 220
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	5, 152, 200
HapII	CCGG	4 cut(s)	45, 60, 270, 399
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	199, 478
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	3 cut(s)	13, 76, 496
HindII	GTYRAC	3 cut(s)	13, 76, 496
HinfI	GANTC	1 cut(s)	303
HpaI	GTTAAC	2 cut(s)	76, 496
HpaII	CCGG	4 cut(s)	45, 60, 270, 399
HphI	GGTGA	4 cut(s)	34, 284, 409, 452
Hpy166II	GTNNAC	3 cut(s)	13, 76, 496
Hpy188III	TCNNGA	3 cut(s)	289, 367, 388
Hpy8I	GTNNAC	3 cut(s)	13, 76, 496
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	230, 493
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	83, 117
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 65, 158, 164, 167, 173, 182, 191, 480
HpyF3I	CTNAG	3 cut(s)	87, 94, 235
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	199, 478
HspAI	GCGC	1 cut(s)	63
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
KspAI	GTTAAC	2 cut(s)	76, 496
KspI	CCGCGG	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	4 cut(s)	67, 77, 95, 231
LweI	GCATC	2 cut(s)	126, 343
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	200
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	51, 75, 495
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	23, 345
MspI	CCGG	4 cut(s)	45, 60, 270, 399
MspR9I	CCNGG	4 cut(s)	270, 399, 400, 464
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	9 cut(s)	26, 65, 158, 164, 167, 173, 182, 191, 480
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	3 cut(s)	270, 399, 400
NcoI	CCATGG	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	199, 478
NlaIV	GGNNCC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	397
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	7 cut(s)	22, 67, 82, 85, 160, 169, 221
PpuMI	RGGWCCY	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	85
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	51, 75, 495
SatI	GCNGC	7 cut(s)	21, 66, 81, 84, 159, 168, 220
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	4 cut(s)	270, 399, 400, 464
SfaNI	GCATC	2 cut(s)	126, 343
SfcI	CTRYAG	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	382
SmaI	CCCGGG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	7 cut(s)	18, 21, 23, 57, 159, 168, 345
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	268, 397, 398, 462
StyI	CCWWGG	3 cut(s)	69, 104, 195
TaaI	ACNGT	2 cut(s)	230, 493
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	368
TaqII	GACCGA	1 cut(s)	440
TauI	GCSGC	3 cut(s)	23, 161, 170
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	3 cut(s)	51, 75, 495
Tru9I	TTAA	3 cut(s)	51, 75, 495
TscAI	CASTG	2 cut(s)	169, 178
TseI	GCWGC	4 cut(s)	65, 80, 83, 219
TspDTI	ATGAA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	2 cut(s)	169, 178
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.