RchiOBHm_Chr6g0303721

Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014420
Physical Location & Seq
Reverse (-)
63357603 .. 63358686
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27287

Sequence Viewer

Length: 501 bp
ATGGCCACCGTCACTCCTGCTGCCGTTGCCATTCCCTCATTCACCGGACTCAAGTCCGCCGGAGCAACCAAACTTGGCGCCACCTCCGTCAAGGTCTCAGCTGCAGTCCCAAGAATGAGCATCAAGTCCTCACTCAAGGACGTCGGTGTTGCAGTCGCTGCCACCGCCGCGAGTGCACTCCTCGCCAGCAATGCCTTGGCCATTGAGATCCTTCTCGGCGGCAGCGATGGCTCCTTGGCTTTTGTCCCCAACGAGTTCTCCATCAGCCCCGGGGACAAGATCGTCTTCAAGAACAACGCTGGATTCCCACACAACGTTGTCTTCGACGAGGACGAGATTCCCGGGGGTGTTGATGCCGGGAAAATCTCCATGAGCGAGGAGGATCTCCTCAACGCCCCAGGAGAGACCTACTCCGTCACCTTGACTGAAAAAGGAACATACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGTATGGCCGGCAAGGTTACCGTTAACTAA

Protein Analysis

166

Amino Acids

16.72

Weight (kDa)

5.06

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copper-bind PF00127 69 - 166 3.8e-37 Copper binding proteins, plastocyanin/azurin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20340
fragaria_vesca FvH4_2g37890
malus_domestica MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica Prupe.1G358900_v2.0.a1
pyrus_communis pycom15g00470
rosa_chinensis RchiOBHm_Chr6g0303721
rosa_laevigata RLG00000011052
rosa_multiflora Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii Rroxscaffold_7G00164450
rosa_rugosa Rorug06G0324300
rosa_samantha Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana Rw6G037960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 57, 165, 168, 219
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 202, 390
AcoI YGGCCR 3 cut(s) 3, 198, 477
AcyI GRCGYC 2 cut(s) 78, 141
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 397, 462
AluBI AGCT 2 cut(s) 101, 470
AluI AGCT 2 cut(s) 101, 470
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 100, 398
Alw44I GTGCAC 1 cut(s) 174
AlwI GGATC 2 cut(s) 202, 390
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 2 cut(s) 269, 341
AoxI GGCC 3 cut(s) 3, 198, 477
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 4 cut(s) 20, 101, 158, 222
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 5 cut(s) 270, 271, 342, 343, 358
AsuHPI GGTGA 3 cut(s) 34, 409, 452
AvaI CYCGRG 2 cut(s) 269, 341
BaeGI GKGCMC 1 cut(s) 178
BalI TGGCCA 2 cut(s) 5, 200
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 277, 313
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 7, 88, 145, 234
BccI CCATC 2 cut(s) 221, 269
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 399, 464
BcnI CCSGG 5 cut(s) 270, 271, 342, 343, 358
BcoDI GTCTC 2 cut(s) 100, 398
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 6 cut(s) 21, 102, 159, 168, 220, 223
BlsI GCNGC 6 cut(s) 22, 103, 160, 169, 221, 224
Bme1390I CCNGG 7 cut(s) 270, 271, 342, 343, 358, 399, 464
BmeT110I CYCGRG 2 cut(s) 269, 341
BmiI GGNNCC 2 cut(s) 79, 232
BmrFI CCNGG 7 cut(s) 270, 271, 342, 343, 358, 399, 464
BmsI GCATC 2 cut(s) 129, 343
BoxI GACNNNNGTC 1 cut(s) 52
BpiI GAAGAC 2 cut(s) 277, 313
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpuEI CTTGAG 2 cut(s) 35, 119
BpuMI CCSGG 5 cut(s) 270, 271, 342, 343, 358
BsaHI GRCGYC 2 cut(s) 78, 141
BsaI GGTCTC 2 cut(s) 100, 398
BsaJI CCNNGG 9 cut(s) 195, 234, 268, 269, 270, 341, 342, 397, 463
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 3 cut(s) 28, 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 399, 464
BseDI CCNNGG 9 cut(s) 195, 234, 268, 269, 270, 341, 342, 397, 463
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 4 cut(s) 170, 377, 392, 447
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 4 cut(s) 7, 88, 145, 234
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 5, 200, 479
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 2 cut(s) 269, 341
BsiSI CCGG 6 cut(s) 45, 60, 270, 342, 357, 480
BslFI GGGAC 3 cut(s) 92, 230, 287
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 100, 398
BsmFI GGGAC 3 cut(s) 92, 230, 287
BsnI GGCC 3 cut(s) 5, 200, 479
Bso31I GGTCTC 2 cut(s) 100, 398
BsoBI CYCGRG 2 cut(s) 269, 341
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 207, 279, 382
BspACI CCGC 4 cut(s) 57, 165, 168, 219
BspANI GGCC 3 cut(s) 5, 200, 479
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 79, 232
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 202, 390
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 2 cut(s) 100, 398
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 9 cut(s) 195, 234, 268, 269, 270, 341, 342, 397, 463
BssMI GATC 3 cut(s) 207, 279, 382
BssNI GRCGYC 2 cut(s) 78, 141
BssT1I CCWWGG 2 cut(s) 195, 234
Bst2UI CCWGG 2 cut(s) 399, 464
Bst4CI ACNGT 2 cut(s) 10, 493
BstACI GRCGYC 2 cut(s) 78, 141
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 187, 481
BstDEI CTNAG 1 cut(s) 97
BstEII GGTNACC 1 cut(s) 487
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 210, 282, 385
BstMAI GTCTC 2 cut(s) 100, 398
BstMBI GATC 3 cut(s) 207, 279, 382
BstMWI GCNNNNNNNGC 9 cut(s) 26, 158, 164, 167, 173, 182, 191, 228, 476
BstNI CCWGG 2 cut(s) 399, 464
BstPAI GACNNNNGTC 1 cut(s) 52
BstPI GGTNACC 1 cut(s) 487
BstSCI CCNGG 7 cut(s) 268, 269, 340, 341, 356, 397, 462
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 7, 88, 145, 234
BstV2I GAAGAC 2 cut(s) 277, 313
BstX2I RGATCY 2 cut(s) 207, 382
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 2 cut(s) 207, 382
BsuRI GGCC 3 cut(s) 5, 200, 479
BtgZI GCGATG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 187, 481
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 479
Cfr9I CCCGGG 2 cut(s) 269, 341
CviAII CATG 1 cut(s) 370
CviJI RGCY 8 cut(s) 5, 101, 200, 231, 239, 267, 470, 479
CviKI_1 RGCY 8 cut(s) 5, 101, 200, 231, 239, 267, 470, 479
DdeI CTNAG 1 cut(s) 97
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 209, 281, 384
DpnII GATC 3 cut(s) 207, 279, 382
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 3 cut(s) 3, 198, 477
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 195, 234
Eco31I GGTCTC 2 cut(s) 100, 398
Eco88I CYCGRG 2 cut(s) 269, 341
Eco91I GGTNACC 1 cut(s) 487
EcoO65I GGTNACC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 397, 462
EcoT14I CCWWGG 2 cut(s) 195, 234
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 195, 234
FaeI CATG 1 cut(s) 373
FaiI YATR 3 cut(s) 371, 439, 476
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 3 cut(s) 92, 230, 287
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 6 cut(s) 21, 102, 159, 168, 220, 223
Fsp4HI GCNGC 6 cut(s) 21, 102, 159, 168, 220, 223
GlaI GCGC 1 cut(s) 79
GluI GCNGC 6 cut(s) 21, 102, 159, 168, 220, 223
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 3 cut(s) 5, 200, 479
HapII CCGG 6 cut(s) 45, 60, 270, 342, 357, 480
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 78, 141
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 3 cut(s) 48, 303, 337
HpaI GTTAAC 1 cut(s) 496
HpaII CCGG 6 cut(s) 45, 60, 270, 342, 357, 480
HphI GGTGA 3 cut(s) 34, 409, 452
Hpy166II GTNNAC 2 cut(s) 176, 496
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 176, 496
Hpy99I CGWCG 2 cut(s) 146, 329
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 10, 493
HpyCH4IV ACGT 2 cut(s) 141, 315
HpyCH4V TGCA 3 cut(s) 104, 152, 176
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 158, 164, 167, 173, 182, 191, 228, 476
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 2 cut(s) 141, 315
Hsp92I GRCGYC 2 cut(s) 78, 141
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
KspAI GTTAAC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 207, 279, 382
LmnI GCTCC 3 cut(s) 62, 236, 467
Lsp1109I GCAGC 4 cut(s) 7, 88, 145, 234
LweI GCATC 2 cut(s) 129, 343
MaeII ACGT 2 cut(s) 141, 315
MaeIII GTNAC 3 cut(s) 10, 415, 487
MalI GATC 3 cut(s) 209, 281, 384
MboI GATC 3 cut(s) 207, 279, 382
MboII GAAGA 2 cut(s) 277, 313
MflI RGATCY 2 cut(s) 207, 382
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 2 cut(s) 5, 200
MluNI TGGCCA 2 cut(s) 5, 200
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 9 cut(s) 46, 94, 139, 191, 322, 370, 373, 398, 468
Mox20I TGGCCA 2 cut(s) 5, 200
MroNI GCCGGC 1 cut(s) 479
MscI TGGCCA 2 cut(s) 5, 200
MseI TTAA 1 cut(s) 495
Msp20I TGGCCA 2 cut(s) 5, 200
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 6 cut(s) 45, 60, 270, 342, 357, 480
MspR9I CCNGG 7 cut(s) 270, 271, 342, 343, 358, 399, 464
MvaI CCWGG 2 cut(s) 399, 464
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 9 cut(s) 26, 158, 164, 167, 173, 182, 191, 228, 476
NaeI GCCGGC 1 cut(s) 481
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 5 cut(s) 270, 271, 342, 343, 358
NdeII GATC 3 cut(s) 207, 279, 382
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 79, 232
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 10, 415
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 321, 330
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 303, 337
PkrI GCNGC 6 cut(s) 22, 103, 160, 169, 221, 224
PleI GAGTC 1 cut(s) 42
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 42
PshAI GACNNNNGTC 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 397, 462
PspEI GGTNACC 1 cut(s) 487
PspGI CCWGG 2 cut(s) 397, 462
PspN4I GGNNCC 2 cut(s) 79, 232
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 207, 382
PvuII CAGCTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 6 cut(s) 21, 102, 159, 168, 220, 223
Sau3AI GATC 3 cut(s) 207, 279, 382
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 7 cut(s) 270, 271, 342, 343, 358, 399, 464
SduI GDGCHC 1 cut(s) 178
SetI ASST 9 cut(s) 86, 96, 103, 144, 318, 410, 422, 472, 489
SfaNI GCATC 2 cut(s) 129, 343
SfcI CTRYAG 1 cut(s) 102
SfoI GGCGCC 1 cut(s) 79
SmaI CCCGGG 2 cut(s) 271, 343
SmlI CTYRAG 2 cut(s) 50, 134
SmoI CTYRAG 2 cut(s) 50, 134
SsiI CCGC 4 cut(s) 57, 165, 168, 219
SspDI GGCGCC 1 cut(s) 77
StyD4I CCNGG 7 cut(s) 268, 269, 340, 341, 356, 397, 462
StyI CCWWGG 2 cut(s) 195, 234
TaaI ACNGT 2 cut(s) 10, 493
TaiI ACGT 2 cut(s) 144, 318
TaqI TCGA 1 cut(s) 324
TauI GCSGC 2 cut(s) 170, 222
TfiI GAWTC 2 cut(s) 303, 337
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 2 cut(s) 10, 415
TseI GCWGC 4 cut(s) 20, 101, 158, 222
Tsp45I GTSAC 2 cut(s) 10, 415
TspGWI ACGGA 2 cut(s) 76, 403
TspMI CCCGGG 2 cut(s) 269, 341
VneI GTGCAC 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmaI CCCGGG 2 cut(s) 269, 341
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.