Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014420

Physical Location & Seq

Genomic Coordinates Forward (+)

27502909 .. 27503412

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCACCGTCACTCCTGCTGCCGTTGCCATCCCCTCATTCACCGGACTCAAGTCCGCCGGAGCAACCAAACTTGTCCCCACCTCCGTCAAGGTCTCAGCTGCTTCTGTCCCAAGAATGAGCATCAAGTCCTCACTAAAGAACGTCGGTGTTGCAGTCGCTGCCACCGCTGCGAGTGCACTCCTCGCCAGCAATGCTTTGGCCATTGAGATCCTTCTCGGAGCCAGTGACGGCTCCTTGGCTTTCGTCCCCAACGACTTCTCGGTCAGCGCCGGTGACAAGATCGTCTTCAAGAACAACGCTGGATTCCCACACAACGTTGTCTTCGACGAGGACGAGATTCCCGGGGGTGTTGATGCCGGGAAAATCTCCATGAGCGAGGAGGATCTCCTAAACGCTCCAGGAGAGACCTACTCCGTCACCTTGACTGAAAAAGGAACATACTCTTTCTACTGCTCCCCTCACCAGGGAGCTGGTATGGCCGGCAAGGTTACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016491 GO:0017148 GO:0019222 GO:0019904 GO:0022900 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031976 GO:0031977 GO:0031984 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0046688 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0055035 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055114 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0098771 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Copper-bind

Protein Analysis

168

Amino Acids

16.84

Weight (kDa)

5.27

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	70 - 167	3.1e-37	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20340
fragaria_vesca	FvH4_2g37890
malus_domestica	MD08G1007200.v1.1 MD15G1006300.v1.1
prunus_persica	Prupe.1G358900_v2.0.a1
pyrus_communis	pycom15g00470
rosa_chinensis	RchiOBHm_Chr6g0303721
rosa_laevigata	RLG00000011052
rosa_multiflora	Rmu_co8452585.1_g000002 Rmu_sc0001024.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164450
rosa_rugosa	Rorug06G0324300
rosa_samantha	Rh6AG438600 Rh6BG464600 Rh6CG450900 Rh6DG437600
rosa_wichuraiana	Rw6G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 284
AciI	CCGC	2 cut(s)	57, 168
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	2 cut(s)	205, 393
AcoI	YGGCCR	3 cut(s)	3, 201, 480
AfiI	CCNNNNNNNGG	2 cut(s)	466, 467
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	400, 465
AluBI	AGCT	2 cut(s)	101, 473
AluI	AGCT	2 cut(s)	101, 473
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	100, 401
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	205, 393
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	3, 201, 480
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	20, 101, 161, 170
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	3 cut(s)	345, 346, 361
AsuHPI	GGTGA	4 cut(s)	34, 287, 412, 455
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	181
BalI	TGGCCA	2 cut(s)	5, 203
BbsI	GAAGAC	2 cut(s)	280, 316
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	7, 88, 148, 157
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	8, 247
BciT130I	CCWGG	2 cut(s)	402, 467
BcnI	CCSGG	3 cut(s)	345, 346, 361
BcoDI	GTCTC	2 cut(s)	100, 401
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	4 cut(s)	21, 102, 162, 171
BlsI	GCNGC	4 cut(s)	22, 103, 163, 172
Bme1390I	CCNGG	5 cut(s)	345, 346, 361, 402, 467
BmeT110I	CYCGRG	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	223, 235
BmrFI	CCNGG	5 cut(s)	345, 346, 361, 402, 467
BmsI	GCATC	2 cut(s)	132, 346
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	280, 316
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	345, 346, 361
BsaI	GGTCTC	2 cut(s)	100, 401
BsaJI	CCNNGG	4 cut(s)	237, 344, 345, 466
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 467
Bse118I	RCCGGY	2 cut(s)	272, 482
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	402, 467
BseDI	CCNNGG	4 cut(s)	237, 344, 345, 466
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	466, 467
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	173, 395
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	7, 88, 148, 157
BshFI	GGCC	3 cut(s)	5, 203, 482
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	6 cut(s)	45, 60, 273, 345, 360, 483
BslFI	GGGAC	3 cut(s)	62, 95, 233
BslI	CCNNNNNNNGG	2 cut(s)	466, 467
BsmAI	GTCTC	2 cut(s)	100, 401
BsmFI	GGGAC	3 cut(s)	62, 95, 233
BsnI	GGCC	3 cut(s)	5, 203, 482
Bso31I	GGTCTC	2 cut(s)	100, 401
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	210, 282, 385
BspACI	CCGC	2 cut(s)	57, 168
BspANI	GGCC	3 cut(s)	5, 203, 482
BspCNI	CTCAG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	223, 235
BspPI	GGATC	2 cut(s)	205, 393
BspTNI	GGTCTC	2 cut(s)	100, 401
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	272, 482
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	2 cut(s)	272, 482
BssECI	CCNNGG	4 cut(s)	237, 344, 345, 466
BssMI	GATC	3 cut(s)	210, 282, 385
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	402, 467
Bst4CI	ACNGT	2 cut(s)	10, 496
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	190, 484
BstDEI	CTNAG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	3 cut(s)	213, 285, 388
BstMAI	GTCTC	2 cut(s)	100, 401
BstMBI	GATC	3 cut(s)	210, 282, 385
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 161, 167, 170, 176, 185, 194, 479
BstNI	CCWGG	2 cut(s)	402, 467
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	5 cut(s)	343, 344, 359, 400, 465
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	4 cut(s)	7, 88, 148, 157
BstV2I	GAAGAC	2 cut(s)	280, 316
BstX2I	RGATCY	2 cut(s)	210, 385
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	2 cut(s)	210, 385
BsuRI	GGCC	3 cut(s)	5, 203, 482
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	190, 484
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	272, 482
Cfr9I	CCCGGG	1 cut(s)	344
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	8 cut(s)	5, 101, 203, 224, 234, 242, 473, 482
CviKI_1	RGCY	8 cut(s)	5, 101, 203, 224, 234, 242, 473, 482
DdeI	CTNAG	1 cut(s)	97
DpnI	GATC	3 cut(s)	212, 284, 387
DpnII	GATC	3 cut(s)	210, 282, 385
DrdI	GACNNNNNNGTC	2 cut(s)	263, 284
DseDI	GACNNNNNNGTC	2 cut(s)	263, 284
EaeI	YGGCCR	3 cut(s)	3, 201, 480
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	237
Eco31I	GGTCTC	2 cut(s)	100, 401
Eco88I	CYCGRG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	400, 465
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	376
FaiI	YATR	3 cut(s)	374, 442, 479
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	3 cut(s)	62, 95, 233
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	21, 102, 162, 171
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	21, 102, 162, 171
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	4 cut(s)	21, 102, 162, 171
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	5, 203, 482
HapII	CCGG	6 cut(s)	45, 60, 273, 345, 360, 483
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	3 cut(s)	48, 306, 340
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	6 cut(s)	45, 60, 273, 345, 360, 483
HphI	GGTGA	4 cut(s)	34, 287, 412, 455
Hpy166II	GTNNAC	2 cut(s)	179, 499
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	179, 499
Hpy99I	CGWCG	2 cut(s)	149, 332
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	10, 496
HpyCH4IV	ACGT	2 cut(s)	144, 318
HpyCH4V	TGCA	2 cut(s)	155, 179
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 161, 167, 170, 176, 185, 194, 479
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	2 cut(s)	144, 318
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	210, 282, 385
LmnI	GCTCC	6 cut(s)	62, 221, 239, 403, 461, 470
Lsp1109I	GCAGC	4 cut(s)	7, 88, 148, 157
LweI	GCATC	2 cut(s)	132, 346
MaeII	ACGT	2 cut(s)	144, 318
MaeIII	GTNAC	5 cut(s)	10, 227, 275, 418, 490
MalI	GATC	3 cut(s)	212, 284, 387
MboI	GATC	3 cut(s)	210, 282, 385
MboII	GAAGA	2 cut(s)	280, 316
MflI	RGATCY	2 cut(s)	210, 385
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	2 cut(s)	5, 203
MluNI	TGGCCA	2 cut(s)	5, 203
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	46, 94, 142, 194, 325, 373, 376, 471
Mox20I	TGGCCA	2 cut(s)	5, 203
MroNI	GCCGGC	1 cut(s)	482
MscI	TGGCCA	2 cut(s)	5, 203
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	2 cut(s)	5, 203
MspA1I	CMGCKG	2 cut(s)	101, 170
MspI	CCGG	6 cut(s)	45, 60, 273, 345, 360, 483
MspR9I	CCNGG	5 cut(s)	345, 346, 361, 402, 467
MvaI	CCWGG	2 cut(s)	402, 467
MwoI	GCNNNNNNNGC	8 cut(s)	26, 161, 167, 170, 176, 185, 194, 479
NaeI	GCCGGC	1 cut(s)	484
NciI	CCSGG	3 cut(s)	345, 346, 361
NdeII	GATC	3 cut(s)	210, 282, 385
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	223, 235
NmuCI	GTSAC	4 cut(s)	10, 227, 275, 418
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 324, 333
PdiI	GCCGGC	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	306, 340
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	22, 103, 163, 172
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PshAI	GACNNNNGTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	400, 465
PspEI	GGTNACC	1 cut(s)	490
PspGI	CCWGG	2 cut(s)	400, 465
PspN4I	GGNNCC	2 cut(s)	223, 235
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	210, 385
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	4 cut(s)	21, 102, 162, 171
Sau3AI	GATC	3 cut(s)	210, 282, 385
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	5 cut(s)	345, 346, 361, 402, 467
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	9 cut(s)	86, 96, 103, 147, 321, 413, 425, 475, 492
SfaNI	GCATC	2 cut(s)	132, 346
SgrAI	CRCCGGYG	1 cut(s)	272
SmaI	CCCGGG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	2 cut(s)	57, 168
StyD4I	CCNGG	5 cut(s)	343, 344, 359, 400, 465
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	10, 496
TaiI	ACGT	2 cut(s)	147, 321
TaqI	TCGA	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	306, 340
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	4 cut(s)	10, 227, 275, 418
TseI	GCWGC	4 cut(s)	20, 101, 161, 170
Tsp45I	GTSAC	4 cut(s)	10, 227, 275, 418
TspGWI	ACGGA	2 cut(s)	76, 406
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmaI	CCCGGG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.