AT1G20380

Prolyl endopeptidase-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
7061442 .. 7065242
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20380.1

Sequence Viewer

Length: 2196 bp
ATGGGATCTCTCCCTGCGTTTGAAGAGCGGTTGCAGTATCCAACGGCGAGGCGTGATGAGTCCGTCGTTGAAGATTATCACGGCGTTAAAGTCTCCGATCCTTACCGCTGGTTGGAAGATCCTGACGCTGAAGAAGTGAAAGAATTTGTAGAGAAGCAAGTGCAATTGTCAGATTCAGTGCTCAAAAGTTGCGAAACGAAGGAAAAGCTTCATGACAAATTCACAAAGTTTATTGATTATCCTCGTTTCGATACGCCCTTTAAGCGAGGGAACAGCTACTTTTACTTCCATAACTCAGGTCTTCAAGCTCAGAGTGTGCTTCATGTTCAGGATGATTTGGAGTCTGAAGCAGAGATCTTGCTTGATCCTAATACTCTTAGTGATGATGGAACAGTTTCTTTAAACACTTTATCTATTAGTGAGGATGCTAAGTATTTGGCTTATGGCCTTAGCTCTAGTGGTAGTGATTGGGTTACTATTAAAGTGATGAAGATTGAAGATAAGAAAGTGGAACCTGATTCTTTATCTTGGGTTAAGTTTAGTGGGATCACATGGACACATGATGGGAAAGGTTTTTTCTACAGTCGCTATCCAGCTCCACGAGAGGGAGAGAAGATAGATGCTGGTACAGAGACTAATTCTAACCTTTACCATGAGTTATACTACCATTTCCTTGGGACTGATCAATCCGAAGATGTTTTGTGTTGGAGAGACCAAGATAATCCCAAACATATGTTCGGATCCAAAGTCACTGATGATGGGAAGTACTTAATCATGTCAATTGAAGAAGGTTGTGACCCTGTAAACAAGGTTTATCATTGTGATCTCTCATTACTTCCTAAAGGTCTAGAAGGTTTTAGAGGAAGCAACACTTTACTTCCATTTGTTAAGCTTATTGACACTTTTGACGCACAATACATTGCTATCGCAAACGACGAGACATTGTTTACTTTCTTAACCAACAAAGATGCCCCAAAGTACAAAGTAGTTCGGGTTGACTTGAAGGAACCGAGCAGTTGGACTGATGTTATCGCTGAACATGAAAAGGATGTTCTCTCAACAGCTTCTGCAGTTAATGGAGACCAACTGGTTGTTAGCTACATGAGTGATGTAAAACACATCCTGCAGATTAGGGACTTGAAATCCGGTTCCTTGCTTCATGGATTACCTGTAGATATTGGCTCGGTATGTGGAGTTTTTGCTCGGCGTAAAGACACCACGTTTTTCTTTAGGTTCACAAGCTTCCTTACACCTGGCGTCATTTACATATGTGACTTATCCCATGAAGCTCCAGAAGTAACGGTATTTCGTGAAATCGGTGTACCTGGATTCGATAGAACTGCATTTCAAGTCACTCAGGTCTTTTATCCGAGTAAGGACGGAACAGATATACCGATGTTTATAGTGGCTAGAAAAGATATAAAGCTAGATGGATCACACCCATGTTTGCTCTATGCATATGGAGGGTTTAGCATAAGCATGACGCCGTTTTTCAGCGCGACCCGTATTGTGCTTGGTAGGCATCTTGGTACCGTGTTCTGTTTTGCAAACATCCGTGGTGGTGGTGAGTATGGTGAGGAATGGCATAAATCTGGTGCTCTTGCCAATAAGCAGAATTGCTTCGATGATTTCATCTCCGGGGCTGAGTATCTGGTTTCAGCTGGTTATACACAACCGAGGAAACTTTGTATCGAAGGTGGTAGTAACGGTGGTATTCTAGTAGGGGCTTGCATTAATCAGAGACCGGATCTCTTTGGGTGTGCTCTGGCTCATGTTGGGGTCATGGACATGCTCCGGTTTCACAAGTTTACCATAGGACATGCTTGGACTTCTGAATTTGGTTGTTCTGACAAGGAAGAGGAGTTCCATTGGCTGATAAAGTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAACAGAAGACAGATCTGTTTTTTCAGTACCCATCAACCATGTTGTTAACTGCTGATCATGACGATAGAGTCGTCCCACTTCATTCTTACAAGTTGCTTGCGACAATGCAATATGAATTAGGTTTGAGTTTAGAGAATAGTCCACAGACGAACCCTATAATTGCTCGAATAGAAGTAAAAGCCGGGCATGGAGCAGGACGTCCAACGCAAAAGATGATTGATGAAGCGGCTGATAGATATTCGTTCATGGCGAAGATGGTGGATGCTTCATGGATCGACTAG

Protein Analysis

731

Amino Acids

82.49

Weight (kDa)

5.26

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9_N PF02897 14 - 436 9.6e-139 Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9 PF00326 499 - 726 4.4e-57 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1982
AatII GACGTC 1 cut(s) 2116
Acc65I GGTACC 1 cut(s) 1529
AccB1I GGYRCC 1 cut(s) 1529
AccBSI CCGCTC 1 cut(s) 28
AccII CGCG 1 cut(s) 1499
AciI CCGC 3 cut(s) 28, 106, 2141
AcsI RAATTY 3 cut(s) 143, 218, 1835
AcuI CTGAAG 2 cut(s) 150, 366
AcyI GRCGYC 3 cut(s) 1257, 1484, 2113
AfaI GTAC 6 cut(s) 628, 767, 980, 1323, 1531, 1943
AfiI CCNNNNNNNGG 2 cut(s) 112, 605
AgsI TTSAA 8 cut(s) 23, 71, 305, 497, 785, 1003, 1141, 1349
AjnI CCWGG 2 cut(s) 1252, 1324
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AloI GAACNNNNNNTCC 2 cut(s) 1847, 1879
Alw21I GWGCWC 3 cut(s) 183, 1600, 1765
Alw26I GTCTC 6 cut(s) 97, 626, 705, 932, 1074, 1735
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 2 cut(s) 445, 1907
ApoI RAATTY 3 cut(s) 143, 218, 1835
AseI ATTAAT 1 cut(s) 1734
Asp700I GAANNNNTTC 3 cut(s) 207, 394, 1619
Asp718I GGTACC 1 cut(s) 1529
AspLEI GCGC 1 cut(s) 1499
AsuC2I CCSGG 2 cut(s) 1639, 2098
AsuHPI GGTGA 2 cut(s) 1577, 1586
BamHI GGATCC 1 cut(s) 740
BanI GGYRCC 1 cut(s) 1529
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 2 cut(s) 293, 1928
Bbv12I GWGCWC 3 cut(s) 183, 1600, 1765
BccI CCATC 6 cut(s) 380, 557, 752, 1424, 1954, 2164
BceAI ACGGC 3 cut(s) 60, 97, 1471
BcgI CGANNNNNNTGC 2 cut(s) 1322, 1356
BciT130I CCWGG 2 cut(s) 1254, 1326
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 2 cut(s) 682, 1969
BcnI CCSGG 2 cut(s) 1639, 2098
BcoDI GTCTC 6 cut(s) 97, 626, 705, 932, 1074, 1735
BfaI CTAG 6 cut(s) 456, 848, 1410, 1427, 1718, 2194
BfmI CTRYAG 4 cut(s) 580, 1068, 1124, 1170
BfuI GTATCC 1 cut(s) 48
BglII AGATCT 2 cut(s) 354, 1927
BisI GCNGC 1 cut(s) 2142
BlsI GCNGC 1 cut(s) 2143
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 4 cut(s) 1254, 1326, 1639, 2098
BmiI GGNNCC 5 cut(s) 513, 742, 1008, 1150, 1531
BmrFI CCNGG 4 cut(s) 1254, 1326, 1639, 2098
BmsI GCATC 5 cut(s) 415, 610, 958, 1531, 2167
BpiI GAAGAC 2 cut(s) 293, 1928
BpmI CTGGAG 1 cut(s) 1275
Bpu10I CCTNAGC 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 1639, 2098
BsaHI GRCGYC 3 cut(s) 1257, 1484, 2113
BsaI GGTCTC 3 cut(s) 705, 1074, 1735
BsaJI CCNNGG 5 cut(s) 673, 1555, 1638, 1676, 1910
BsaWI WCCGGW 3 cut(s) 1145, 1744, 1794
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 605
Bse1I ACTGG 1 cut(s) 1092
Bse3DI GCAATG 1 cut(s) 918
BseBI CCWGG 2 cut(s) 1254, 1326
BseDI CCNNGG 5 cut(s) 673, 1555, 1638, 1676, 1910
BseGI GGATG 6 cut(s) 337, 430, 1054, 1119, 1551, 2182
BseLI CCNNNNNNNGG 2 cut(s) 112, 605
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 4 cut(s) 309, 323, 1370, 1635
BseNI ACTGG 1 cut(s) 1092
BseRI GAGGAG 1 cut(s) 1874
Bsh1236I CGCG 1 cut(s) 1499
BshFI GGCC 2 cut(s) 447, 1909
BshNI GGYRCC 1 cut(s) 1529
BsiHKAI GWGCWC 3 cut(s) 183, 1600, 1765
BsiSI CCGG 5 cut(s) 1146, 1638, 1745, 1795, 2097
BslFI GGGAC 3 cut(s) 691, 1148, 1973
BslI CCNNNNNNNGG 2 cut(s) 112, 605
BsmAI GTCTC 6 cut(s) 97, 626, 705, 932, 1074, 1735
BsmFI GGGAC 3 cut(s) 691, 1148, 1973
BsnI GGCC 2 cut(s) 447, 1909
Bso31I GGTCTC 3 cut(s) 705, 1074, 1735
Bsp1286I GDGCHC 3 cut(s) 183, 1600, 1765
Bsp19I CCATGG 1 cut(s) 1910
BspACI CCGC 3 cut(s) 28, 106, 2141
BspANI GGCC 2 cut(s) 447, 1909
BspCNI CTCAG 4 cut(s) 308, 322, 1369, 1636
BspFNI CGCG 1 cut(s) 1499
BspHI TCATGA 2 cut(s) 211, 1972
BspLI GGNNCC 5 cut(s) 513, 742, 1008, 1150, 1531
BspMAI CTGCAG 2 cut(s) 1072, 1128
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 1529
BspTNI GGTCTC 3 cut(s) 705, 1074, 1735
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 918
BsrI ACTGG 1 cut(s) 1092
BssECI CCNNGG 5 cut(s) 673, 1555, 1638, 1676, 1910
BssNI GRCGYC 3 cut(s) 1257, 1484, 2113
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 2 cut(s) 673, 1910
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 1254, 1326
Bst4CI ACNGT 5 cut(s) 394, 584, 1303, 1534, 1709
Bst6I CTCTTC 3 cut(s) 18, 1851, 1898
BstACI GRCGYC 3 cut(s) 1257, 1484, 2113
BstC8I GCNNGC 2 cut(s) 1729, 2013
BstDEI CTNAG 7 cut(s) 295, 309, 377, 429, 449, 1356, 1644
BstDSI CCRYGG 2 cut(s) 1555, 1910
BstF5I GGATG 6 cut(s) 337, 430, 1054, 1119, 1551, 2182
BstFNI CGCG 1 cut(s) 1499
BstHHI GCGC 1 cut(s) 1499
BstMAI GTCTC 6 cut(s) 97, 626, 705, 932, 1074, 1735
BstMWI GCNNNNNNNGC 2 cut(s) 262, 1519
BstNI CCWGG 2 cut(s) 1254, 1326
BstNSI RCATGY 2 cut(s) 1792, 1823
BstSCI CCNGG 4 cut(s) 1252, 1324, 1637, 2096
BstSFI CTRYAG 4 cut(s) 580, 1068, 1124, 1170
BstUI CGCG 1 cut(s) 1499
BstV2I GAAGAC 2 cut(s) 293, 1928
BstX2I RGATCY 6 cut(s) 5, 118, 354, 740, 1747, 1927
BstXI CCANNNNNNTGG 1 cut(s) 674
BstYI RGATCY 6 cut(s) 5, 118, 354, 740, 1747, 1927
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 447, 1909
BtgI CCRYGG 2 cut(s) 1555, 1910
BtsCI GGATG 6 cut(s) 337, 430, 1054, 1119, 1551, 2182
BtsIMutI CAGTG 2 cut(s) 183, 750
Cac8I GCNNGC 2 cut(s) 1729, 2013
CaiI CAGNNNCTG 1 cut(s) 1067
CciI TCATGA 2 cut(s) 211, 1972
CfoI GCGC 1 cut(s) 1499
CseI GACGC 4 cut(s) 134, 917, 1246, 1492
Csp6I GTAC 6 cut(s) 627, 766, 979, 1322, 1530, 1942
CviQI GTAC 6 cut(s) 627, 766, 979, 1322, 1530, 1942
DdeI CTNAG 7 cut(s) 295, 309, 377, 429, 449, 1356, 1644
DraI TTTAAA 1 cut(s) 402
DrdI GACNNNNNNGTC 1 cut(s) 1982
DseDI GACNNNNNNGTC 1 cut(s) 1982
Eam1104I CTCTTC 3 cut(s) 18, 1851, 1898
EarI CTCTTC 3 cut(s) 18, 1851, 1898
Eco130I CCWWGG 2 cut(s) 673, 1910
Eco31I GGTCTC 3 cut(s) 705, 1074, 1735
Eco57I CTGAAG 2 cut(s) 150, 366
EcoRII CCWGG 2 cut(s) 1252, 1324
EcoT14I CCWWGG 2 cut(s) 673, 1910
EcoT22I ATGCAT 1 cut(s) 1459
ErhI CCWWGG 2 cut(s) 673, 1910
FalI AAGNNNNNCTT 2 cut(s) 856, 888
FaqI GGGAC 3 cut(s) 691, 1148, 1973
FauNDI CATATG 3 cut(s) 732, 1268, 1459
FbaI TGATCA 2 cut(s) 682, 1969
Fnu4HI GCNGC 1 cut(s) 2142
FokI GGATG 6 cut(s) 344, 437, 1061, 1106, 1538, 2189
Fsp4HI GCNGC 1 cut(s) 2142
FspBI CTAG 6 cut(s) 456, 848, 1410, 1427, 1718, 2194
GlaI GCGC 1 cut(s) 1498
GluI GCNGC 1 cut(s) 2142
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 2 cut(s) 447, 1909
HapII CCGG 5 cut(s) 1146, 1638, 1745, 1795, 2097
HgaI GACGC 4 cut(s) 134, 917, 1246, 1492
HhaI GCGC 1 cut(s) 1499
Hin1I GRCGYC 3 cut(s) 1257, 1484, 2113
Hin6I GCGC 1 cut(s) 1497
HinP1I GCGC 1 cut(s) 1497
HincII GTYRAC 2 cut(s) 997, 1962
HindII GTYRAC 2 cut(s) 997, 1962
HindIII AAGCTT 3 cut(s) 206, 890, 1240
HinfI GANTC 6 cut(s) 59, 173, 341, 518, 1329, 1983
HpaI GTTAAC 1 cut(s) 1962
HpaII CCGG 5 cut(s) 1146, 1638, 1745, 1795, 2097
HphI GGTGA 2 cut(s) 1577, 1586
Hpy166II GTNNAC 8 cut(s) 805, 948, 997, 1236, 1322, 1809, 1962, 2057
Hpy188III TCNNGA 7 cut(s) 122, 212, 329, 848, 1292, 1310, 1973
Hpy8I GTNNAC 8 cut(s) 805, 948, 997, 1236, 1322, 1809, 1962, 2057
Hpy99I CGWCG 2 cut(s) 68, 938
HpyAV CCTTC 5 cut(s) 193, 782, 845, 997, 1688
HpyCH4III ACNGT 5 cut(s) 394, 584, 1303, 1534, 1709
HpyCH4IV ACGT 2 cut(s) 1220, 2113
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 1519
HpyF3I CTNAG 7 cut(s) 295, 309, 377, 429, 449, 1356, 1644
HpySE526I ACGT 2 cut(s) 1220, 2113
Hsp92I GRCGYC 3 cut(s) 1257, 1484, 2113
HspAI GCGC 1 cut(s) 1497
KpnI GGTACC 1 cut(s) 1533
Ksp22I TGATCA 2 cut(s) 682, 1969
KspAI GTTAAC 1 cut(s) 1962
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 4 cut(s) 601, 1294, 1797, 2105
LweI GCATC 5 cut(s) 415, 610, 958, 1531, 2167
MaeI CTAG 6 cut(s) 456, 848, 1410, 1427, 1718, 2194
MaeII ACGT 2 cut(s) 1220, 2113
MaeIII GTNAC 7 cut(s) 472, 748, 794, 1271, 1297, 1351, 1703
MbiI CCGCTC 1 cut(s) 28
MfeI CAATTG 2 cut(s) 164, 780
MflI RGATCY 6 cut(s) 5, 118, 354, 740, 1747, 1927
MhlI GDGCHC 3 cut(s) 183, 1600, 1765
MluCI AATT 9 cut(s) 143, 164, 218, 637, 780, 1615, 1835, 2030, 2073
MlyI GAGTC 3 cut(s) 68, 350, 1992
MmeI TCCRAC 5 cut(s) 65, 93, 686, 998, 2141
Mph1103I ATGCAT 1 cut(s) 1459
MroXI GAANNNNTTC 3 cut(s) 207, 394, 1619
MslI CAYNNNNRTG 3 cut(s) 1441, 1478, 1787
MspA1I CMGCKG 2 cut(s) 108, 1661
MspI CCGG 5 cut(s) 1146, 1638, 1745, 1795, 2097
MspR9I CCNGG 4 cut(s) 1254, 1326, 1639, 2098
MunI CAATTG 2 cut(s) 164, 780
MvaI CCWGG 2 cut(s) 1254, 1326
MvnI CGCG 1 cut(s) 1499
MwoI GCNNNNNNNGC 2 cut(s) 262, 1519
NciI CCSGG 2 cut(s) 1639, 2098
NcoI CCATGG 1 cut(s) 1910
NdeI CATATG 3 cut(s) 732, 1268, 1459
NlaIV GGNNCC 5 cut(s) 513, 742, 1008, 1150, 1531
NmeAIII GCCGAG 1 cut(s) 1183
NmuCI GTSAC 4 cut(s) 748, 794, 1271, 1351
NsiI ATGCAT 1 cut(s) 1459
NspI RCATGY 2 cut(s) 1792, 1823
PagI TCATGA 2 cut(s) 211, 1972
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 3 cut(s) 933, 1983, 2162
PdmI GAANNNNTTC 3 cut(s) 207, 394, 1619
PfeI GAWTC 3 cut(s) 173, 518, 1329
PkrI GCNGC 1 cut(s) 2143
PleI GAGTC 3 cut(s) 67, 349, 1991
PpsI GAGTC 3 cut(s) 67, 349, 1991
PshBI ATTAAT 1 cut(s) 1734
Psp6I CCWGG 2 cut(s) 1252, 1324
PspGI CCWGG 2 cut(s) 1252, 1324
PspN4I GGNNCC 5 cut(s) 513, 742, 1008, 1150, 1531
PstI CTGCAG 2 cut(s) 1072, 1128
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 6 cut(s) 5, 118, 354, 740, 1747, 1927
PvuII CAGCTG 1 cut(s) 1661
RsaI GTAC 6 cut(s) 628, 767, 980, 1323, 1531, 1943
RsaNI GTAC 6 cut(s) 627, 766, 979, 1322, 1530, 1942
RseI CAYNNNNRTG 3 cut(s) 1441, 1478, 1787
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 1 cut(s) 2142
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 3 cut(s) 68, 350, 1992
ScrFI CCNGG 4 cut(s) 1254, 1326, 1639, 2098
SduI GDGCHC 3 cut(s) 183, 1600, 1765
SfaNI GCATC 5 cut(s) 415, 610, 958, 1531, 2167
SfcI CTRYAG 4 cut(s) 580, 1068, 1124, 1170
SmiMI CAYNNNNRTG 3 cut(s) 1441, 1478, 1787
Sse9I AATT 9 cut(s) 143, 164, 218, 637, 780, 1615, 1835, 2030, 2073
SsiI CCGC 3 cut(s) 28, 106, 2141
SspMI CTAG 6 cut(s) 456, 848, 1410, 1427, 1718, 2194
StyD4I CCNGG 4 cut(s) 1252, 1324, 1637, 2096
StyI CCWWGG 2 cut(s) 673, 1910
TaaI ACNGT 5 cut(s) 394, 584, 1303, 1534, 1709
TaiI ACGT 2 cut(s) 1223, 2116
TaqI TCGA 6 cut(s) 249, 1332, 1623, 1692, 2080, 2190
TasI AATT 9 cut(s) 143, 164, 218, 637, 780, 1615, 1835, 2030, 2073
TatI WGTACW 2 cut(s) 765, 978
TauI GCSGC 1 cut(s) 2144
TfiI GAWTC 3 cut(s) 173, 518, 1329
TscAI CASTG 2 cut(s) 183, 757
TseFI GTSAC 4 cut(s) 748, 794, 1271, 1351
Tsp45I GTSAC 4 cut(s) 748, 794, 1271, 1351
TspGWI ACGGA 3 cut(s) 52, 1395, 1544
TspRI CASTG 2 cut(s) 183, 757
VspI ATTAAT 1 cut(s) 1734
XapI RAATTY 3 cut(s) 143, 218, 1835
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 1792, 1823
XmnI GAANNNNTTC 3 cut(s) 207, 394, 1619
XspI CTAG 6 cut(s) 456, 848, 1410, 1427, 1718, 2194
ZraI GACGTC 1 cut(s) 2114
ZrmI AGTACT 1 cut(s) 767
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.