Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006317

Physical Location & Seq

Genomic Coordinates Reverse (-)

6296917 .. 6302503

Gene Structure 5587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGAAATCTAATCTCTCTCATTTTGCTCGTGAATCGCTATGTGTTGCAGTGCGTCGTCCCAATTTTGATTGTGCTTTTCGCCGGAGAAGGCCGTTCATCTTCTCCAATTGTTCACGGTGGTTATTTACTCCGCCGCAGTCAACGCCGGTCAAATCGACTCGCTCTTTCTCCTCCGTCGTCGTTTCATCCTCAAATCCTAGAATGGGATCCCTCGGTGCCCTAGACCTACGTTCGAAGTACCCTAGCGTCCGCCGAGATGAGTCCGTCGTCGATGACTACCACGGCGTCAAGGTTGCCGATCCTTATAGATGGCTTGAAGATCCTGATTCGGAAGAGACGAAGGAATTTGTACAGAAACAAGTGGAATTGACGCAGTCGGTGCTGAAGGAATGCGATGATATCAGAGGGAAGCTATCTGATAAAATCACCAAGCTGTTTGATCACCCACGCTATGATCCACCTTTTCGGCGAGGAGCAAGTACTTCTACTCCCATAACACCGGGCTTCAAGCTCAAAACGTGCTCTATGTGCAGTTTGGATGGAGAACCGGAGGTTTTGCTTGATCCTAATACGCTTAGTGAAGATGGGACAGTAGCTTTGAGTACACATTCAGTAAGTGAGGATGCCAAGTACTTGGCCTATGCCCTTAGTACAAGTGGCAGTGATTGGGTAACAATTAAAGTGATGCGCGTTGAGGATAAGAAGGTGGAGCCAGAAACTTTATCTTGGGTCAAGTTTTCTGGAATTAGTTGGACACATGATAACAAAGGGTTTTTCTATAGCCGCTATCCAGCTCCAAAAGAAGGAGAGGACATTGACGCTGGCACAGAGACCAACACAAATCTTTATCATGAGTTATACTACCATTTTGTGGGTACGGATCAATCAAAAGACATATTATGCTGGAAAGATTCTGAAAATCCCAAATACTTGTTTGGAGCCAGTGTTACTGATGATGGGAAGTATGCTCTTATATATATTGATGAGGGTTGTGACCCAGTCAACAAATTTTACTACTGCGACATGTCTGCACTTCCTAATGGGCTTGAAGGTCTGAGGGCGAAAAATGAGCTGCTTCCGGTTGTTAAGCTTGTTGATACATTTGAGGCACAGTATCATGTGATTGCAAATGATGACACTGTCTTTACTTTGCTGACAAATAAAGATGCTCCAAAATATAAGTTGGTCCGAGTTGATCTGAAGGAACCAACTGTTTGGACTGACGTGATTAAAGAATCTGAAAAAGATGTACTTGAATCGGCATCTGCTGTAAATGGTACCCAAATGATTGTTAGTTACTTGAGTGATGTGAAGTATGTCCTACAGATCAGGGATTTGAAATCGGGTAGCTTGGTGCATCAATTGCCCATTGACATTGGCTCAGTTACTGGAATTTCTGCAAGACGTGAAGATAGTACAATTTTTTTTGGCTTTACAAGCTTTGTTACACCGGGAGTAATATATCAGTGTAATTTAGACAATGAAGTTCCAGATATGAAGGTATTTCGCGAAATTACAGTTCCTGGGTTTGAACGCTCAGACTTCCATGTTGATCAGGTATTCATACCCAGTAAGGATGGCACTCAGATACCTATATTTGTTGTGGCCAGAAAGAACATTATTTTGGATGGATCACACCCTTGTTTGTTATACGGATATGGTGGATTTAACATTAGTCTTACGCCATCATTCAGCGTTAGTCGCATGGTACTTACAAGACATTTAGGTGTTGTTTACTGCCTAGCAAATATCCGTGGGGGTGGAGAGTATGGAGAGGAATGGCATAAGGCAGGCTCCCTATCAAAAAAGCAAAATTGCTTTGATGACTTCATTTCTGCTGGTGAATACCTTGTATCTGCTGGTTACACCCAACCTAGCAAGTTGTGCATAGAAGGTGGAAGTAATGGGGGGCTTCTTATCGGGGCTTGCATAAATCAGAGGCCTGATCTTTTTGGTTGTGCACTTGCTCATGTTGGTGTAATGGACATGCTGAGGTTCCACAAGTTTACCATAGGTCATGCATGGACTTCTGATTATGGATGTTCTGACAAGGAGGAAGAATTCCGTTGGCTAATTAAGTACTCGCCTCTACACAACGTCAGGAGACCATGGGAACAACATCCAAACCAATGTCAGCAGTACCCACCTACCATGCTATTGACTGCAGATCATGATGACCGAGTTGTCCCATTACACTCGTTGAAGTTATTGGCGACATTGCAATATGTGTTAATTACAAGTTTGGAGAAAAGTCCACAGATCAATCCAATTATTGGACGCATTGAATGCAAGGCAGGTCATGGAGCTGGACGTCCGACACAGAAAATGATTGCTGAAGCTGCTGACCGGTTTAGTTTCATGGCTAAGATGCTGGGTGCATCATGGATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016787 GO:0019538 GO:0033218 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04614 map04614

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

797

Amino Acids

89.52

Weight (kDa)

5.94

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S9_N	PF02897	81 - 496	1.1e-125	Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9	PF00326	562 - 792	8.4e-59	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20380 AT1G20380 AT1G76140 AT1G76140
fragaria_vesca	FvH4_2g37820 FvH4_2g37820 FvH4_2g37820 FvH4_2g37820
malus_domestica	MD08G1005500.v1.1 MD15G1004900.v1.1
prunus_persica	Prupe.1G357500_v2.0.a1 Prupe.1G357700_v2.0.a1 Prupe.1G357700_v2.0.a1 Prupe.1G357700_v2.0.a1
pyrus_communis	pycom15g00350
rosa_chinensis	RchiOBHm_Chr6g0303891
rosa_laevigata	RLG00000011037
rosa_multiflora	Rmu_sc0004644.1_g000008 Rmu_sc0007179.1_g000009
rosa_roxburghii	Rroxscaffold_5G00357480 Rroxscaffold_7G00164300
rosa_rugosa	Rorug06G0325600
rosa_samantha	Rh6AG439900 Rh6BG463100 Rh6CG452200 Rh6DG439100
rosa_wichuraiana	Rw6G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2183
AatII	GACGTC	1 cut(s)	2314
Acc36I	ACCTGC	1 cut(s)	2285
Acc65I	GGTACC	1 cut(s)	1277
AccB1I	GGYRCC	2 cut(s)	215, 1277
AccB7I	CCANNNNNTGG	2 cut(s)	871, 2273
AccII	CGCG	2 cut(s)	690, 1509
AciI	CCGC	4 cut(s)	131, 134, 250, 784
AclWI	GGATC	8 cut(s)	201, 214, 293, 314, 449, 557, 888, 1639
AcoI	YGGCCR	1 cut(s)	1605
AcsI	RAATTY	4 cut(s)	344, 1007, 1392, 2060
AcuI	CTGAAG	3 cut(s)	404, 1220, 2355
AcyI	GRCGYC	2 cut(s)	285, 2311
AfiI	CCNNNNNNNGG	4 cut(s)	203, 803, 871, 2273
AflIII	ACRYGT	1 cut(s)	1023
AgeI	ACCGGT	1 cut(s)	2346
AgsI	TTSAA	8 cut(s)	317, 508, 1049, 1256, 1339, 1532, 2203, 2285
AjiI	CACGTC	2 cut(s)	1225, 1406
AjnI	CCWGG	1 cut(s)	1522
AjuI	GAANNNNNNNTTGG	2 cut(s)	1607, 1639
Alw21I	GWGCWC	2 cut(s)	524, 1963
Alw26I	GTCTC	3 cut(s)	329, 824, 2098
Alw44I	GTGCAC	1 cut(s)	1959
AlwI	GGATC	8 cut(s)	201, 214, 293, 314, 449, 557, 888, 1639
AlwNI	CAGNNNCTG	2 cut(s)	1388, 1523
AoxI	GGCC	4 cut(s)	89, 636, 1605, 1940
ApaLI	GTGCAC	1 cut(s)	1959
ApeKI	GCWGC	2 cut(s)	1072, 2339
ApoI	RAATTY	4 cut(s)	344, 1007, 1392, 2060
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AsiGI	ACCGGT	1 cut(s)	2346
Asp718I	GGTACC	1 cut(s)	1277
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	1 cut(s)	1186
AsuC2I	CCSGG	2 cut(s)	501, 1452
AsuHPI	GGTGA	3 cut(s)	418, 434, 1853
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	1186
BaeGI	GKGCMC	2 cut(s)	220, 1963
BalI	TGGCCA	1 cut(s)	1607
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	215, 1277
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	524, 1963
BbvCI	CCTCAGC	1 cut(s)	1991
BbvI	GCAGC	2 cut(s)	1059, 2326
BccI	CCATC	7 cut(s)	303, 533, 578, 950, 1571, 1622, 1693
BceAI	ACGGC	2 cut(s)	76, 298
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	1 cut(s)	1524
BclI	TGATCA	2 cut(s)	439, 1552
BcnI	CCSGG	2 cut(s)	501, 1452
BcoDI	GTCTC	3 cut(s)	329, 824, 2098
BfaI	CTAG	5 cut(s)	198, 221, 243, 1742, 1875
BfmI	CTRYAG	3 cut(s)	778, 1322, 2163
BfuAI	ACCTGC	1 cut(s)	2285
BisI	GCNGC	4 cut(s)	134, 784, 1073, 2340
BlsI	GCNGC	4 cut(s)	135, 785, 1074, 2341
BmcAI	AGTACT	3 cut(s)	481, 632, 2081
Bme1390I	CCNGG	3 cut(s)	501, 1452, 1524
Bme18I	GGWCC	1 cut(s)	1186
BmgBI	CACGTC	2 cut(s)	1225, 1406
BmgT120I	GGNCC	1 cut(s)	1186
BmiI	GGNNCC	8 cut(s)	208, 217, 711, 940, 1206, 1279, 1795, 1997
BmrFI	CCNGG	3 cut(s)	501, 1452, 1524
BmrI	ACTGGG	2 cut(s)	992, 1563
BmsI	GCATC	7 cut(s)	613, 675, 1156, 1271, 1366, 2358, 2387
BmuI	ACTGGG	2 cut(s)	992, 1563
Bpu10I	CCTNAGC	1 cut(s)	1991
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	1321
BpuMI	CCSGG	2 cut(s)	501, 1452
BsaHI	GRCGYC	2 cut(s)	285, 2311
BsaI	GGTCTC	2 cut(s)	824, 2098
BsaJI	CCNNGG	5 cut(s)	211, 280, 1523, 1753, 2108
BsaWI	WCCGGW	3 cut(s)	547, 1078, 2346
BsaXI	ACNNNNNCTCC	4 cut(s)	472, 502, 930, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 803, 871, 2273
Bse118I	RCCGGY	2 cut(s)	145, 2346
Bse1I	ACTGG	4 cut(s)	942, 998, 1393, 1569
Bse3DI	GCAATG	1 cut(s)	2216
BseBI	CCWGG	1 cut(s)	1524
BseDI	CCNNGG	5 cut(s)	211, 280, 1523, 1753, 2108
BseGI	GGATG	7 cut(s)	185, 544, 628, 1582, 1633, 2045, 2119
BseLI	CCNNNNNNNGG	4 cut(s)	203, 803, 871, 2273
BseMI	GCAATG	1 cut(s)	2216
BseMII	CTCAG	5 cut(s)	1046, 1395, 1551, 1598, 1982
BseNI	ACTGG	4 cut(s)	942, 998, 1393, 1569
BseRI	GAGGAG	2 cut(s)	160, 486
BseSI	GKGCMC	2 cut(s)	220, 1963
BseXI	GCAGC	2 cut(s)	1059, 2326
BseYI	CCCAGC	1 cut(s)	2371
BsgI	GTGCAG	2 cut(s)	550, 1014
Bsh1236I	CGCG	2 cut(s)	690, 1509
BshFI	GGCC	4 cut(s)	91, 638, 1607, 1942
BshNI	GGYRCC	2 cut(s)	215, 1277
BshTI	ACCGGT	1 cut(s)	2346
BsiHKAI	GWGCWC	2 cut(s)	524, 1963
BsiSI	CCGG	7 cut(s)	82, 146, 500, 548, 1079, 1451, 2347
BslFI	GGGAC	3 cut(s)	42, 601, 2171
BslI	CCNNNNNNNGG	4 cut(s)	203, 803, 871, 2273
BsmAI	GTCTC	3 cut(s)	329, 824, 2098
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	3 cut(s)	42, 601, 2171
BsmI	GAATGC	2 cut(s)	395, 2291
BsnI	GGCC	4 cut(s)	91, 638, 1607, 1942
Bso31I	GGTCTC	2 cut(s)	824, 2098
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	220, 524, 1963
Bsp1407I	TGTACA	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	2108
Bsp68I	TCGCGA	1 cut(s)	1509
BspACI	CCGC	4 cut(s)	131, 134, 250, 784
BspANI	GGCC	4 cut(s)	91, 638, 1607, 1942
BspCNI	CTCAG	5 cut(s)	1047, 1394, 1550, 1597, 1983
BspFNI	CGCG	2 cut(s)	690, 1509
BspHI	TCATGA	2 cut(s)	850, 2170
BspLI	GGNNCC	8 cut(s)	208, 217, 711, 940, 1206, 1279, 1795, 1997
BspMAI	CTGCAG	1 cut(s)	2167
BspMI	ACCTGC	1 cut(s)	2285
BspPI	GGATC	8 cut(s)	201, 214, 293, 314, 449, 557, 888, 1639
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	2 cut(s)	215, 1277
BspTNI	GGTCTC	2 cut(s)	824, 2098
BsrDI	GCAATG	1 cut(s)	2216
BsrFI	RCCGGY	2 cut(s)	145, 2346
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	4 cut(s)	942, 998, 1393, 1569
BssAI	RCCGGY	2 cut(s)	145, 2346
BssECI	CCNNGG	5 cut(s)	211, 280, 1523, 1753, 2108
BssNI	GRCGYC	2 cut(s)	285, 2311
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	2108
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	1524
Bst4CI	ACNGT	6 cut(s)	117, 592, 1113, 1141, 1213, 1519
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	285, 2311
BstAPI	GCANNNNNTGC	4 cut(s)	379, 1363, 1884, 2286
BstAUI	TGTACA	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	823, 1792, 1927
BstDEI	CTNAG	8 cut(s)	575, 647, 1055, 1381, 1537, 1584, 1991, 2364
BstDSI	CCRYGG	3 cut(s)	280, 1753, 2108
BstF5I	GGATG	7 cut(s)	185, 544, 628, 1582, 1633, 2045, 2119
BstFNI	CGCG	2 cut(s)	690, 1509
BstHHI	GCGC	1 cut(s)	690
BstMAI	GTCTC	3 cut(s)	329, 824, 2098
BstMWI	GCNNNNNNNGC	9 cut(s)	142, 379, 528, 1363, 1437, 1701, 1884, 2286, 2339
BstNI	CCWGG	1 cut(s)	1524
BstNSI	RCATGY	2 cut(s)	1027, 1990
BstSCI	CCNGG	3 cut(s)	499, 1450, 1522
BstSFI	CTRYAG	3 cut(s)	778, 1322, 2163
BstSLI	GKGCMC	2 cut(s)	220, 1963
BstUI	CGCG	2 cut(s)	690, 1509
BstV1I	GCAGC	2 cut(s)	1059, 2326
BstX2I	RGATCY	2 cut(s)	206, 319
BstXI	CCANNNNNNTGG	2 cut(s)	634, 1215
BstYI	RGATCY	2 cut(s)	206, 319
BsuRI	GGCC	4 cut(s)	91, 638, 1607, 1942
BtgI	CCRYGG	3 cut(s)	280, 1753, 2108
BtgZI	GCGATG	1 cut(s)	408
BtrI	CACGTC	2 cut(s)	1225, 1406
BtsCI	GGATG	7 cut(s)	185, 544, 628, 1582, 1633, 2045, 2119
BtsI	GCAGTG	2 cut(s)	54, 667
BtsIMutI	CAGTG	5 cut(s)	54, 667, 949, 1137, 1472
BtuMI	TCGCGA	1 cut(s)	1509
BveI	ACCTGC	1 cut(s)	2285
Cac8I	GCNNGC	3 cut(s)	823, 1792, 1927
CaiI	CAGNNNCTG	2 cut(s)	1388, 1523
CciI	TCATGA	2 cut(s)	850, 2170
CfoI	GCGC	1 cut(s)	690
Cfr10I	RCCGGY	2 cut(s)	145, 2346
Cfr13I	GGNCC	1 cut(s)	1186
CseI	GACGC	6 cut(s)	41, 235, 274, 379, 827, 2286
CspAI	ACCGGT	1 cut(s)	2346
DdeI	CTNAG	8 cut(s)	575, 647, 1055, 1381, 1537, 1584, 1991, 2364
DrdI	GACNNNNNNGTC	1 cut(s)	2183
DseDI	GACNNNNNNGTC	1 cut(s)	2183
EaeI	YGGCCR	1 cut(s)	1605
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	2 cut(s)	120, 239
Eco130I	CCWWGG	1 cut(s)	2108
Eco147I	AGGCCT	1 cut(s)	1942
Eco31I	GGTCTC	2 cut(s)	824, 2098
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	1186
Eco57I	CTGAAG	3 cut(s)	404, 1220, 2355
EcoRI	GAATTC	1 cut(s)	2060
EcoRII	CCWGG	1 cut(s)	1522
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	2108
EcoT22I	ATGCAT	1 cut(s)	2023
ErhI	CCWWGG	1 cut(s)	2108
Esp3I	CGTCTC	1 cut(s)	329
FalI	AAGNNNNNCTT	2 cut(s)	1236, 1268
FaqI	GGGAC	3 cut(s)	42, 601, 2171
FbaI	TGATCA	2 cut(s)	439, 1552
Fnu4HI	GCNGC	4 cut(s)	134, 784, 1073, 2340
FokI	GGATG	7 cut(s)	172, 551, 635, 1589, 1640, 2052, 2106
Fsp4HI	GCNGC	4 cut(s)	134, 784, 1073, 2340
FspBI	CTAG	5 cut(s)	198, 221, 243, 1742, 1875
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	4 cut(s)	134, 784, 1073, 2340
GsaI	CCCAGC	1 cut(s)	2375
HaeIII	GGCC	4 cut(s)	91, 638, 1607, 1942
HapII	CCGG	7 cut(s)	82, 146, 500, 548, 1079, 1451, 2347
HgaI	GACGC	6 cut(s)	41, 235, 274, 379, 827, 2286
HhaI	GCGC	1 cut(s)	690
Hin1I	GRCGYC	2 cut(s)	285, 2311
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HincII	GTYRAC	2 cut(s)	141, 1003
HindII	GTYRAC	2 cut(s)	141, 1003
HindIII	AAGCTT	2 cut(s)	1088, 1438
HinfI	GANTC	7 cut(s)	32, 157, 260, 326, 911, 1235, 1256
HpaII	CCGG	7 cut(s)	82, 146, 500, 548, 1079, 1451, 2347
HphI	GGTGA	3 cut(s)	418, 434, 1853
Hpy166II	GTNNAC	8 cut(s)	113, 141, 605, 1003, 1735, 1961, 2007, 2255
Hpy188III	TCNNGA	8 cut(s)	29, 323, 741, 851, 1490, 1508, 2101, 2171
Hpy8I	GTNNAC	8 cut(s)	113, 141, 605, 1003, 1735, 1961, 2007, 2255
Hpy99I	CGWCG	5 cut(s)	57, 179, 182, 269, 272
HpyAV	CCTTC	9 cut(s)	81, 334, 379, 697, 797, 1043, 1195, 1492, 1886
HpyCH4III	ACNGT	6 cut(s)	117, 592, 1113, 1141, 1213, 1519
HpyCH4IV	ACGT	6 cut(s)	229, 518, 1224, 1405, 2097, 2311
HpyF10VI	GCNNNNNNNGC	9 cut(s)	142, 379, 528, 1363, 1437, 1701, 1884, 2286, 2339
HpyF3I	CTNAG	8 cut(s)	575, 647, 1055, 1381, 1537, 1584, 1991, 2364
HpySE526I	ACGT	6 cut(s)	229, 518, 1224, 1405, 2097, 2311
Hsp92I	GRCGYC	2 cut(s)	285, 2311
HspAI	GCGC	1 cut(s)	688
KpnI	GGTACC	1 cut(s)	1281
Ksp22I	TGATCA	2 cut(s)	439, 1552
LmnI	GCTCC	7 cut(s)	473, 709, 799, 938, 1174, 1799, 2303
Lsp1109I	GCAGC	2 cut(s)	1059, 2326
LweI	GCATC	7 cut(s)	613, 675, 1156, 1271, 1366, 2358, 2387
MaeI	CTAG	5 cut(s)	198, 221, 243, 1742, 1875
MaeII	ACGT	6 cut(s)	229, 518, 1224, 1405, 2097, 2311
MaeIII	GTNAC	7 cut(s)	670, 946, 992, 1295, 1384, 1444, 1862
MboII	GAAGA	6 cut(s)	91, 329, 344, 593, 1421, 2069
MfeI	CAATTG	2 cut(s)	106, 1361
MflI	RGATCY	2 cut(s)	206, 319
MhlI	GDGCHC	3 cut(s)	220, 524, 1963
MlsI	TGGCCA	1 cut(s)	1607
MluNI	TGGCCA	1 cut(s)	1607
MlyI	GAGTC	2 cut(s)	151, 269
MmeI	TCCRAC	2 cut(s)	731, 2339
Mox20I	TGGCCA	1 cut(s)	1607
Mph1103I	ATGCAT	1 cut(s)	2023
MscI	TGGCCA	1 cut(s)	1607
MseI	TTAA	6 cut(s)	678, 1086, 1230, 1668, 2076, 2231
MslI	CAYNNNNRTG	2 cut(s)	1725, 1974
Msp20I	TGGCCA	1 cut(s)	1607
MspI	CCGG	7 cut(s)	82, 146, 500, 548, 1079, 1451, 2347
MspR9I	CCNGG	3 cut(s)	501, 1452, 1524
MunI	CAATTG	2 cut(s)	106, 1361
Mva1269I	GAATGC	2 cut(s)	395, 2291
MvaI	CCWGG	1 cut(s)	1524
MvnI	CGCG	2 cut(s)	690, 1509
MwoI	GCNNNNNNNGC	9 cut(s)	142, 379, 528, 1363, 1437, 1701, 1884, 2286, 2339
NciI	CCSGG	2 cut(s)	501, 1452
NcoI	CCATGG	1 cut(s)	2108
NlaIV	GGNNCC	8 cut(s)	208, 217, 711, 940, 1206, 1279, 1795, 1997
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	992
NruI	TCGCGA	1 cut(s)	1509
NsiI	ATGCAT	1 cut(s)	2023
NspI	RCATGY	2 cut(s)	1027, 1990
NspV	TTCGAA	1 cut(s)	233
PagI	TCATGA	2 cut(s)	850, 2170
PceI	AGGCCT	1 cut(s)	1942
PciI	ACATGT	1 cut(s)	1023
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PctI	GAATGC	2 cut(s)	395, 2291
PfeI	GAWTC	5 cut(s)	32, 326, 911, 1235, 1256
PflFI	GACNNNGTC	3 cut(s)	373, 998, 1139
PflMI	CCANNNNNTGG	2 cut(s)	871, 2273
PinAI	ACCGGT	1 cut(s)	2346
PkrI	GCNGC	4 cut(s)	135, 785, 1074, 2341
PleI	GAGTC	2 cut(s)	151, 268
PpsI	GAGTC	2 cut(s)	151, 268
PscI	ACATGT	1 cut(s)	1023
Psp6I	CCWGG	1 cut(s)	1522
PspFI	CCCAGC	1 cut(s)	2371
PspGI	CCWGG	1 cut(s)	1522
PspN4I	GGNNCC	8 cut(s)	208, 217, 711, 940, 1206, 1279, 1795, 1997
PspPI	GGNCC	1 cut(s)	1186
PstI	CTGCAG	1 cut(s)	2167
PstNI	CAGNNNCTG	2 cut(s)	1388, 1523
PsuI	RGATCY	2 cut(s)	206, 319
PsyI	GACNNNGTC	3 cut(s)	373, 998, 1139
RruI	TCGCGA	1 cut(s)	1509
RseI	CAYNNNNRTG	2 cut(s)	1725, 1974
SaqAI	TTAA	6 cut(s)	678, 1086, 1230, 1668, 2076, 2231
SatI	GCNGC	4 cut(s)	134, 784, 1073, 2340
Sau96I	GGNCC	1 cut(s)	1186
ScaI	AGTACT	3 cut(s)	481, 632, 2081
SchI	GAGTC	2 cut(s)	151, 269
ScrFI	CCNGG	3 cut(s)	501, 1452, 1524
SduI	GDGCHC	3 cut(s)	220, 524, 1963
SfaNI	GCATC	7 cut(s)	613, 675, 1156, 1271, 1366, 2358, 2387
SfcI	CTRYAG	3 cut(s)	778, 1322, 2163
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	1186
SmiMI	CAYNNNNRTG	2 cut(s)	1725, 1974
SmlI	CTYRAG	1 cut(s)	1300
SmoI	CTYRAG	1 cut(s)	1300
SseBI	AGGCCT	1 cut(s)	1942
SsiI	CCGC	4 cut(s)	131, 134, 250, 784
SspMI	CTAG	5 cut(s)	198, 221, 243, 1742, 1875
StuI	AGGCCT	1 cut(s)	1942
StyD4I	CCNGG	3 cut(s)	499, 1450, 1522
StyI	CCWWGG	1 cut(s)	2108
TaaI	ACNGT	6 cut(s)	117, 592, 1113, 1141, 1213, 1519
TaiI	ACGT	6 cut(s)	232, 521, 1227, 1408, 2100, 2314
TaqI	TCGA	3 cut(s)	155, 233, 270
TaqII	GACCGA	1 cut(s)	2193
TatI	WGTACW	8 cut(s)	349, 479, 602, 630, 650, 1249, 1415, 2079
TauI	GCSGC	2 cut(s)	136, 786
TfiI	GAWTC	5 cut(s)	32, 326, 911, 1235, 1256
Tru1I	TTAA	6 cut(s)	678, 1086, 1230, 1668, 2076, 2231
Tru9I	TTAA	6 cut(s)	678, 1086, 1230, 1668, 2076, 2231
TscAI	CASTG	5 cut(s)	54, 667, 949, 1144, 1472
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	2 cut(s)	1072, 2339
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	8 cut(s)	17, 85, 174, 1497, 1511, 1552, 1819, 2347
TspGWI	ACGGA	6 cut(s)	163, 253, 893, 1668, 1742, 2054
TspRI	CASTG	5 cut(s)	54, 667, 949, 1144, 1472
Tth111I	GACNNNGTC	3 cut(s)	373, 998, 1139
Van91I	CCANNNNNTGG	2 cut(s)	871, 2273
VneI	GTGCAC	1 cut(s)	1959
VpaK11BI	GGWCC	1 cut(s)	1186
XapI	RAATTY	4 cut(s)	344, 1007, 1392, 2060
XceI	RCATGY	2 cut(s)	1027, 1990
XspI	CTAG	5 cut(s)	198, 221, 243, 1742, 1875
ZraI	GACGTC	1 cut(s)	2312
ZrmI	AGTACT	3 cut(s)	481, 632, 2081
Zsp2I	ATGCAT	1 cut(s)	2023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.