AT1G21370

intermembrane lipid transfer activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011939
Physical Location & Seq
Forward (+)
7483781 .. 7485666
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21370.1

Sequence Viewer

Length: 1029 bp
ATGAAAAGTTATCCAATTGGATCGAGTAAGGCATTTCATGCGTACTCAAGAAGCGGTGATTTCGATTTAGAATCAGGAGGAACTATCAGAAAATCTAGAAAGCCTAAGACTTCGTTTTCGAAGATGATCAAATCTCTTGGGAATCGTCTTCACCACATGTTCAAATTGCACCCGGTTCTCGTTTTCGTCGTTTGTGTCTCGTTTGGTATCACAGTTCTGATACTTGTATCGTCGATTTACGGGAACCGTTTAGGATCAACGGTTAGTTATTATAAGAAGAATGATTTGGATAGCGATGGTTATCCATTTGCTAATCTGAAGAACCTTGTGATGGTTGCTGGACATTCTGTTTATACGAGTAGTGATTGTGGTAAAGTTGAGAAGGAGGATTCGTGGTTCTTGGAGTCTTATCAGAAGAATCCAGGTCAAGCTGCAACGTTCTTGAGTCATATACAAGAAGGTGTTGAAGCAGCAGCGAAAGATGATGAGTCTTTGCTTCTATTCAGTGGTGGAGAGACTCGTAAGGACGCAGGACCTCGTAGTGAAGCTCAGAGTTATTGGGCTGTTGCTGAGTCAAAAGGATGGTTTGGTAAGAATGAGGTGAGGTCTAGGGCCTTGACGGAAGAGCATGCCAGAGACAGCTTTGAGAATCTTCTCTTTAGCGTTTGTCGATTCAGAGAGCTCACAGGCTCTTACCCACAGAACATAACAGTAGTGAGTTATGATTTTAAGGAGGAGAGATTTGCGCATTTGCATCGTTCAGCAATGGGATTTCCGGAATCAAGATTTTTCTACTTAGGAACACCAGCTTCTCTATCATCCAAAGAAGGCGCTCTAAAAGGCGAGGCTTTGGTTAGATCACAATTTCAAGAAGATCCATACGGATGTGTTGGTTCGCTTTGGCGTAAGAAGCTGAATCGTGACCCTTTCCATAGGACTATACCTTACCCTATTGGTTGCCCTGAAATTGGAGGATTGTTCAGGTACTGTGGTTCAGCTCCTTTTCCTGGCTCTCTCCCATGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF218

Protein Analysis

342

Amino Acids

38.19

Weight (kDa)

8.96

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21370 AT1G21370
fragaria_vesca FvH4_2g14460 FvH4_2g14460
malus_domestica MD05G1017500.v1.1 MD10G1017500.v1.1
prunus_persica Prupe.8G021400_v2.0.a1
pyrus_communis pycom05g00980 pycom10g01120
rosa_chinensis RchiOBHm_Chr6g0276791
rosa_laevigata RLG00000013361
rosa_multiflora Rmu_co8479231.1_g000001
rosa_roxburghii Rroxscaffold_7G00191940
rosa_rugosa Rorug06G0104500
rosa_samantha Rh6AG214400 Rh6BG219200 Rh6CG221900 Rh6DG211900
rosa_wichuraiana Rw6G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 747
AccIII TCCGGA 1 cut(s) 775
AciI CCGC 1 cut(s) 54
AclI AACGTT 1 cut(s) 437
AclWI GGATC 3 cut(s) 28, 262, 869
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 2 cut(s) 44, 986
AfiI CCNNNNNNNGG 3 cut(s) 331, 968, 1007
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 163, 467, 869
AjnI CCWGG 2 cut(s) 421, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 7 cut(s) 431, 548, 642, 682, 809, 913, 998
AluI AGCT 7 cut(s) 431, 548, 642, 682, 809, 913, 998
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 3 cut(s) 202, 509, 630
AlwI GGATC 3 cut(s) 28, 262, 869
AlwNI CAGNNNCTG 1 cut(s) 987
Aor13HI TCCGGA 1 cut(s) 775
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 431, 470, 473
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 2 cut(s) 748, 833
AspS9I GGNCC 2 cut(s) 533, 612
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 68, 143, 613
AsuII TTCGAA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 976, 1009
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 418, 482, 485
BccI CCATC 3 cut(s) 290, 325, 576
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 2 cut(s) 423, 1008
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 3 cut(s) 202, 509, 630
BfaI CTAG 2 cut(s) 96, 609
BfoI RGCGCY 1 cut(s) 834
BisI GCNGC 3 cut(s) 432, 471, 474
BlsI GCNGC 3 cut(s) 433, 472, 475
Bme1390I CCNGG 3 cut(s) 173, 423, 1008
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 533, 612
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 3 cut(s) 173, 423, 1008
BmsI GCATC 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 31, 463
BpuMI CCSGG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 1019
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 968, 1007
Bse3DI GCAATG 1 cut(s) 771
Bse8I GATNNNNATC 1 cut(s) 300
BseAI TCCGGA 1 cut(s) 775
BseBI CCWGG 2 cut(s) 423, 1008
BseDI CCNNGG 1 cut(s) 1019
BseGI GGATG 3 cut(s) 587, 818, 890
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 3 cut(s) 331, 968, 1007
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 561, 563
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 3 cut(s) 418, 482, 485
BshFI GGCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 684
BsiSI CCGG 2 cut(s) 173, 776
BslI CCNNNNNNNGG 3 cut(s) 331, 968, 1007
BsmAI GTCTC 3 cut(s) 202, 509, 630
BsnI GGCC 1 cut(s) 614
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 684
Bsp13I TCCGGA 1 cut(s) 775
Bsp143I GATC 5 cut(s) 20, 126, 254, 857, 874
Bsp19I CCATGG 1 cut(s) 1019
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 562, 562
BspEI TCCGGA 1 cut(s) 775
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 3 cut(s) 28, 262, 869
BspQI GCTCTTC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 771
BssECI CCNNGG 1 cut(s) 1019
BssMI GATC 5 cut(s) 20, 126, 254, 857, 874
BssT1I CCWWGG 1 cut(s) 1019
Bst2UI CCWGG 2 cut(s) 423, 1008
Bst4CI ACNGT 5 cut(s) 214, 248, 262, 712, 989
Bst6I CTCTTC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 4 cut(s) 105, 549, 570, 796
BstDSI CCRYGG 1 cut(s) 1019
BstF5I GGATG 3 cut(s) 587, 818, 890
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 2 cut(s) 748, 833
BstKTI GATC 5 cut(s) 23, 129, 257, 860, 877
BstMAI GTCTC 3 cut(s) 202, 509, 630
BstMBI GATC 5 cut(s) 20, 126, 254, 857, 874
BstMWI GCNNNNNNNGC 2 cut(s) 38, 910
BstNI CCWGG 2 cut(s) 423, 1008
BstNSI RCATGY 2 cut(s) 160, 632
BstSCI CCNGG 3 cut(s) 171, 421, 1006
BstV1I GCAGC 3 cut(s) 418, 482, 485
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 1 cut(s) 1019
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 587, 818, 890
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 987
CfoI GCGC 2 cut(s) 748, 833
Cfr13I GGNCC 2 cut(s) 533, 612
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 43, 985
CviAII CATG 4 cut(s) 38, 157, 629, 1020
CviQI GTAC 2 cut(s) 43, 985
DdeI CTNAG 4 cut(s) 105, 549, 570, 796
DpnI GATC 5 cut(s) 22, 128, 256, 859, 876
DpnII GATC 5 cut(s) 20, 126, 254, 857, 874
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 1019
Eco24I GRGCYC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 682
EcoO109I RGGNCCY 2 cut(s) 533, 612
EcoRII CCWGG 2 cut(s) 421, 1006
EcoT14I CCWWGG 1 cut(s) 1019
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 1019
FaeI CATG 4 cut(s) 41, 160, 632, 1023
FatI CATG 4 cut(s) 37, 156, 628, 1019
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 432, 471, 474
FokI GGATG 3 cut(s) 594, 805, 897
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 3 cut(s) 432, 471, 474
FspBI CTAG 2 cut(s) 96, 609
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 2 cut(s) 747, 832
GluI GCNGC 3 cut(s) 432, 471, 474
HaeII RGCGCY 1 cut(s) 834
HaeIII GGCC 1 cut(s) 614
HapII CCGG 2 cut(s) 173, 776
HgaI GACGC 1 cut(s) 536
HhaI GCGC 2 cut(s) 748, 833
Hin1II CATG 4 cut(s) 41, 160, 632, 1023
Hin6I GCGC 2 cut(s) 746, 831
HinP1I GCGC 2 cut(s) 746, 831
HpaII CCGG 2 cut(s) 173, 776
HphI GGTGA 3 cut(s) 68, 143, 613
Hpy188I TCNGA 6 cut(s) 89, 219, 318, 414, 552, 677
Hpy188III TCNNGA 8 cut(s) 48, 75, 96, 442, 776, 783, 869, 920
Hpy99I CGWCG 2 cut(s) 191, 235
HpyAV CCTTC 3 cut(s) 376, 452, 821
HpyCH4III ACNGT 5 cut(s) 214, 248, 262, 712, 989
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 169, 434, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 910
HpyF3I CTNAG 4 cut(s) 105, 549, 570, 796
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 4 cut(s) 41, 160, 632, 1023
HspAI GCGC 2 cut(s) 746, 831
Kpn2I TCCGGA 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 5 cut(s) 20, 126, 254, 857, 874
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 3 cut(s) 418, 482, 485
LweI GCATC 1 cut(s) 763
MaeI CTAG 2 cut(s) 96, 609
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 920
MalI GATC 5 cut(s) 22, 128, 256, 859, 876
MboI GATC 5 cut(s) 20, 126, 254, 857, 874
MboII GAAGA 8 cut(s) 133, 140, 289, 331, 427, 635, 644, 884
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 4 cut(s) 15, 164, 863, 966
MlyI GAGTC 5 cut(s) 413, 454, 497, 511, 581
MnlI CCTC 8 cut(s) 71, 379, 546, 592, 597, 727, 838, 965
MroI TCCGGA 1 cut(s) 775
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 883
MspI CCGG 2 cut(s) 173, 776
MspR9I CCNGG 3 cut(s) 173, 423, 1008
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 2 cut(s) 423, 1008
MwoI GCNNNNNNNGC 2 cut(s) 38, 910
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 1 cut(s) 1019
NdeII GATC 5 cut(s) 20, 126, 254, 857, 874
NlaIII CATG 4 cut(s) 41, 160, 632, 1023
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 920
NsbI TGCGCA 1 cut(s) 747
NspI RCATGY 2 cut(s) 160, 632
NspV TTCGAA 1 cut(s) 119
PaeI GCATGC 1 cut(s) 632
PciI ACATGT 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 8 cut(s) 71, 142, 389, 418, 649, 672, 779, 916
PkrI GCNGC 3 cut(s) 433, 472, 475
PleI GAGTC 5 cut(s) 412, 453, 496, 511, 580
PpsI GAGTC 5 cut(s) 412, 453, 496, 511, 580
PpuMI RGGWCCY 1 cut(s) 533
PscI ACATGT 1 cut(s) 156
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 684
Psp1406I AACGTT 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 421, 1006
PspGI CCWGG 2 cut(s) 421, 1006
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 533, 612
PspPPI RGGWCCY 1 cut(s) 533
PstNI CAGNNNCTG 1 cut(s) 987
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 2 cut(s) 44, 986
RsaNI GTAC 2 cut(s) 43, 985
RseI CAYNNNNRTG 1 cut(s) 883
SacI GAGCTC 1 cut(s) 684
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 3 cut(s) 432, 471, 474
Sau3AI GATC 5 cut(s) 20, 126, 254, 857, 874
Sau96I GGNCC 2 cut(s) 533, 612
SchI GAGTC 5 cut(s) 413, 454, 497, 511, 581
ScrFI CCNGG 3 cut(s) 173, 423, 1008
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 1 cut(s) 763
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 883
SmlI CTYRAG 2 cut(s) 46, 442
SmoI CTYRAG 2 cut(s) 46, 442
SphI GCATGC 1 cut(s) 632
Sse9I AATT 4 cut(s) 15, 164, 863, 966
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 96, 609
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 3 cut(s) 171, 421, 1006
StyI CCWWGG 1 cut(s) 1019
TaaI ACNGT 5 cut(s) 214, 248, 262, 712, 989
TaiI ACGT 1 cut(s) 440
TaqI TCGA 5 cut(s) 23, 63, 119, 233, 670
TasI AATT 4 cut(s) 15, 164, 863, 966
TfiI GAWTC 8 cut(s) 71, 142, 389, 418, 649, 672, 779, 916
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 3 cut(s) 431, 470, 473
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 2 cut(s) 17, 26
TspGWI ACGGA 2 cut(s) 635, 897
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 533
XbaI TCTAGA 1 cut(s) 95
XceI RCATGY 2 cut(s) 160, 632
XspI CTAG 2 cut(s) 96, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.