Rorug06G0104500

DUF218 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011939
Physical Location & Seq
Reverse (-)
13796540 .. 13798189
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0104500.1

Sequence Viewer

Length: 483 bp
ATGACAGCTATATTTTTGCAGGCTGATGAGGCTGATGTTGTGTTTAAGACTGTGGTGCCTGATGGTAATGGAAATGGTCCAGTTGATAACTATAGCTATGCAGAGCAACGATTGCAGCAGGTTGTCGAATCTAAGTATATCATGAAGGATCCTTCTACAGAACCGGGACCTGGCAGTCCAGCCCTGGCTTGGTCGGTGACGCCGTCGCCGCCGCCATCAAGGCAGGATATCGGCATATTGATTGTGCTCCACTCTATGGCAATGAGGAGGAGATATCAATTGGAACTGTGTAAGAAAGCTTTGGAGAACATAATTGTGTATCTGGAAACTGGTGTTGGAAATACCCACATAGCCGTGTTGCTTATTGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGTACTAGAAAGAATATGGCTATCAAACTGAATAATTATGCTTATGATTTGATTGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF218

Protein Analysis

160

Amino Acids

17.84

Weight (kDa)

5.1

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21370 AT1G21370
fragaria_vesca FvH4_2g14460 FvH4_2g14460
malus_domestica MD05G1017500.v1.1 MD10G1017500.v1.1
prunus_persica Prupe.8G021400_v2.0.a1
pyrus_communis pycom05g00980 pycom10g01120
rosa_chinensis RchiOBHm_Chr6g0276791
rosa_laevigata RLG00000013361
rosa_multiflora Rmu_co8479231.1_g000001
rosa_roxburghii Rroxscaffold_7G00191940
rosa_rugosa Rorug06G0104500
rosa_samantha Rh6AG214400 Rh6BG219200 Rh6CG221900 Rh6DG211900
rosa_wichuraiana Rw6G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 256
AciI CCGC 2 cut(s) 209, 212
AclWI GGATC 3 cut(s) 143, 156, 396
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 170, 189, 256
AjnI CCWGG 2 cut(s) 169, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 3 cut(s) 8, 96, 299
AluI AGCT 3 cut(s) 8, 96, 299
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 3 cut(s) 143, 156, 396
ApeKI GCWGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 77, 167
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 2 cut(s) 77, 167
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 56, 223
BceAI ACGGC 2 cut(s) 187, 338
BciT130I CCWGG 2 cut(s) 171, 185
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 2 cut(s) 91, 156
BfuAI ACCTGC 1 cut(s) 109
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 3 cut(s) 116, 209, 212
BlsI GCNGC 3 cut(s) 117, 210, 213
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 3 cut(s) 165, 171, 185
Bme18I GGWCC 2 cut(s) 77, 167
BmgT120I GGNCC 2 cut(s) 77, 167
BmiI GGNNCC 3 cut(s) 57, 150, 168
BmrFI CCNGG 3 cut(s) 165, 171, 185
BpuMI CCSGG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 189, 256
Bse1I ACTGG 2 cut(s) 80, 334
Bse3DI GCAATG 2 cut(s) 267, 422
BseBI CCWGG 2 cut(s) 171, 185
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 170, 189, 256
BseMI GCAATG 2 cut(s) 267, 422
BseNI ACTGG 2 cut(s) 80, 334
BseRI GAGGAG 2 cut(s) 280, 283
BseXI GCAGC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 3 cut(s) 170, 189, 256
BsmFI GGGAC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 148, 369, 388
BspACI CCGC 2 cut(s) 209, 212
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 57, 150, 168
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 143, 156, 396
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 267, 422
BsrI ACTGG 2 cut(s) 80, 334
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 148, 369, 388
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 171, 185
Bst4CI ACNGT 2 cut(s) 52, 288
BstACI GRCGYC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 132
BstKTI GATC 3 cut(s) 151, 372, 391
BstMBI GATC 3 cut(s) 148, 369, 388
BstMWI GCNNNNNNNGC 4 cut(s) 29, 112, 208, 220
BstNI CCWGG 2 cut(s) 171, 185
BstSCI CCNGG 3 cut(s) 163, 169, 183
BstSFI CTRYAG 2 cut(s) 91, 156
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 77, 167
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 142
CviJI RGCY 9 cut(s) 8, 23, 32, 96, 182, 188, 299, 353, 440
CviKI_1 RGCY 9 cut(s) 8, 23, 32, 96, 182, 188, 299, 353, 440
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 150, 371, 390
DpnII GATC 3 cut(s) 148, 369, 388
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
Eco32I GATATC 2 cut(s) 229, 275
Eco47I GGWCC 2 cut(s) 77, 167
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 169, 183
EcoRV GATATC 2 cut(s) 229, 275
FaeI CATG 1 cut(s) 145
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 116, 209, 212
Fsp4HI GCNGC 3 cut(s) 116, 209, 212
FspBI CTAG 1 cut(s) 426
GluI GCNGC 3 cut(s) 116, 209, 212
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 2 cut(s) 142, 323
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 139, 162
HpyCH4III ACNGT 2 cut(s) 52, 288
HpyCH4V TGCA 4 cut(s) 19, 101, 115, 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 112, 208, 220
HpyF3I CTNAG 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 3 cut(s) 148, 369, 388
LmnI GCTCC 2 cut(s) 252, 403
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 150, 371, 390
MboI GATC 3 cut(s) 148, 369, 388
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 278, 312, 393, 454
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 22, 258, 261
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 314, 353
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 3 cut(s) 165, 171, 185
MunI CAATTG 1 cut(s) 278
MvaI CCWGG 2 cut(s) 171, 185
MwoI GCNNNNNNNGC 4 cut(s) 29, 112, 208, 220
NciI CCSGG 1 cut(s) 165
NdeII GATC 3 cut(s) 148, 369, 388
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 3 cut(s) 57, 150, 168
NmuCI GTSAC 1 cut(s) 196
PagI TCATGA 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 3 cut(s) 117, 210, 213
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 169, 183
PspGI CCWGG 2 cut(s) 169, 183
PspN4I GGNNCC 3 cut(s) 57, 150, 168
PspPI GGNCC 2 cut(s) 77, 167
PspPPI RGGWCCY 1 cut(s) 167
PsuI RGATCY 1 cut(s) 148
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 314, 353
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 116, 209, 212
Sau3AI GATC 3 cut(s) 148, 369, 388
Sau96I GGNCC 2 cut(s) 77, 167
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 3 cut(s) 165, 171, 185
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 10, 98, 123, 172, 301
SfcI CTRYAG 2 cut(s) 91, 156
SinI GGWCC 2 cut(s) 77, 167
SmiMI CAYNNNNRTG 2 cut(s) 314, 353
Sse9I AATT 4 cut(s) 278, 312, 393, 454
SsiI CCGC 2 cut(s) 209, 212
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 163, 169, 183
TaaI ACNGT 2 cut(s) 52, 288
TaqI TCGA 1 cut(s) 126
TasI AATT 4 cut(s) 278, 312, 393, 454
TatI WGTACW 1 cut(s) 422
TauI GCSGC 2 cut(s) 211, 214
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 77, 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 186
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.