AT1G21690

Replication factor C C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012087
Physical Location & Seq
Forward (+)
7615505 .. 7618628
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21690.3

Sequence Viewer

Length: 1020 bp
ATGGCGCCAGTTCTTCAGAGCTCACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGAGGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCGCACATGCTCTTCTATGGACCACCAGGCACTGGAAAAACCACTACTGCTCTTGCCATCGCTCACCAGCTCTTTGGACCTGAACTATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAATGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCAAAGTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGACAGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATTCTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAAGTTCAGGTTTAAACCACTTTCCGAAGAAGTCATGAGTAACCGTATATTGCATATTTGTAATGAAGAAGGTCTCAGCCTTGATGGAGAGGCTCTTTCAACTTTGAGCTCCATATCACAAGGTGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAATAACTTCTACAGATTTACTCAATGTGTCTGGGGTAGTTCCTCTAGAGGTAGTCAATAAACTTTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGTTGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGCTGACAGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGATAAGCGACTTGTAGACGGGGCGGATGAGTACTTGCAGCTTCTGGATGTGGCAAGCAGTACAATTTGTGCCCTCTCAGAAATGGCTCAAGACTTCTAA

Protein Analysis

339

Amino Acids

37.51

Weight (kDa)

5.2

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 26 - 174 4.4e-13 DNA polymerase III, delta subunit
AAA PF00004 45 - 173 2.9e-17 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 179 - 220 6.8e-07 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 185 - 221 8.5e-08 RCF1/5-like, AAA+ ATPase lid domain
Rep_fac_C PF08542 243 - 309 1.2e-12 Replication factor C C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21690 AT1G21690 AT1G21690 AT1G21690
fragaria_vesca FvH4_2g27570 FvH4_2g27570
malus_domestica MD15G1344500.v1.1
prunus_persica Prupe.1G492200_v2.0.a1 Prupe.1G492200_v2.0.a1
pyrus_communis pycom15g30770
rosa_chinensis RchiOBHm_Chr6g0296411
rosa_laevigata RLG00000011690
rosa_multiflora Rmu_sc0008096.1_g000015
rosa_roxburghii Rroxscaffold_7G00171570 Rroxscaffold_7G00178550
rosa_rugosa Rorug06G0262100 Rorug06G0262200
rosa_samantha Rh6BG381800
rosa_wichuraiana Rw6G032570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 158
AccI GTMKAC 1 cut(s) 936
AciI CCGC 3 cut(s) 128, 857, 944
AclWI GGATC 2 cut(s) 479, 682
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 2 cut(s) 953, 982
AfiI CCNNNNNNNGG 3 cut(s) 82, 158, 367
AgsI TTSAA 1 cut(s) 600
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 3 cut(s) 75, 151, 491
AluBI AGCT 7 cut(s) 21, 196, 235, 609, 841, 914, 961
AluI AGCT 7 cut(s) 21, 196, 235, 609, 841, 914, 961
Alw21I GWGCWC 2 cut(s) 23, 611
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 2 cut(s) 479, 682
AlwNI CAGNNNCTG 2 cut(s) 158, 964
AoxI GGCC 2 cut(s) 47, 636
ApeKI GCWGC 2 cut(s) 293, 958
AseI ATTAAT 1 cut(s) 261
AspLEI GCGC 2 cut(s) 7, 411
AspS9I GGNCC 3 cut(s) 146, 203, 636
AsuHPI GGTGA 6 cut(s) 65, 91, 182, 427, 635, 776
AvaII GGWCC 2 cut(s) 146, 203
BaeGI GKGCMC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 23, 483, 611
Bbv12I GWGCWC 2 cut(s) 23, 611
BbvI GCAGC 2 cut(s) 280, 970
BccI CCATC 4 cut(s) 191, 349, 578, 647
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 3 cut(s) 77, 153, 493
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 3 cut(s) 222, 362, 725
BfmI CTRYAG 2 cut(s) 650, 690
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 46
BglII AGATCT 1 cut(s) 897
BisI GCNGC 2 cut(s) 294, 959
BlsI GCNGC 2 cut(s) 295, 960
BmcAI AGTACT 1 cut(s) 953
Bme1390I CCNGG 3 cut(s) 77, 153, 493
Bme18I GGWCC 2 cut(s) 146, 203
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 146, 203, 636
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 77, 153, 493
BmsI GCATC 2 cut(s) 379, 830
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 424, 993
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 158, 367
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 8, 163
Bse8I GATNNNNATC 1 cut(s) 356
BseBI CCWGG 3 cut(s) 77, 153, 493
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 357, 952, 973
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 3 cut(s) 82, 158, 367
BseMII CTCAG 3 cut(s) 407, 589, 1011
BseNI ACTGG 2 cut(s) 8, 163
BseSI GKGCMC 1 cut(s) 994
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 280, 970
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 49, 638
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 23, 611
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 82, 158, 367
BsmAI GTCTC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 49, 638
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 4 cut(s) 23, 483, 611, 994
Bsp143I GATC 6 cut(s) 279, 351, 471, 625, 674, 897
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 3 cut(s) 128, 857, 944
BspANI GGCC 2 cut(s) 49, 638
BspCNI CTCAG 3 cut(s) 406, 588, 1010
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 654
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 2 cut(s) 479, 682
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 2 cut(s) 8, 163
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 6 cut(s) 279, 351, 471, 625, 674, 897
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 3 cut(s) 77, 153, 493
Bst4CI ACNGT 2 cut(s) 545, 869
Bst6I CTCTTC 2 cut(s) 75, 143
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 128, 754, 976
BstDEI CTNAG 5 cut(s) 276, 393, 575, 894, 997
BstDSI CCRYGG 1 cut(s) 29
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 357, 952, 973
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 411
BstKTI GATC 6 cut(s) 282, 354, 474, 628, 677, 900
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 6 cut(s) 279, 351, 471, 625, 674, 897
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 299, 398
BstNI CCWGG 3 cut(s) 77, 153, 493
BstNSI RCATGY 3 cut(s) 136, 756, 886
BstSCI CCNGG 3 cut(s) 75, 151, 491
BstSFI CTRYAG 2 cut(s) 650, 690
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 2 cut(s) 280, 970
BstX2I RGATCY 1 cut(s) 897
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 897
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 638
BtgI CCRYGG 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 357, 952, 973
BtsIMutI CAGTG 2 cut(s) 156, 874
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 128, 754, 976
CaiI CAGNNNCTG 2 cut(s) 158, 964
CciI TCATGA 1 cut(s) 534
CfoI GCGC 2 cut(s) 7, 411
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 3 cut(s) 146, 203, 636
Csp6I GTAC 2 cut(s) 952, 981
CviAII CATG 5 cut(s) 30, 133, 535, 753, 883
CviQI GTAC 2 cut(s) 952, 981
DdeI CTNAG 5 cut(s) 276, 393, 575, 894, 997
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 281, 353, 473, 627, 676, 899
DpnII GATC 6 cut(s) 279, 351, 471, 625, 674, 897
DraI TTTAAA 1 cut(s) 514
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 75, 143
EarI CTCTTC 2 cut(s) 75, 143
EciI GGCGGA 1 cut(s) 959
Ecl136II GAGCTC 2 cut(s) 21, 609
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 3 cut(s) 23, 483, 611
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 815
Eco47I GGWCC 2 cut(s) 146, 203
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 2 cut(s) 21, 609
EcoICRI GAGCTC 2 cut(s) 21, 609
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 3 cut(s) 75, 151, 491
EcoRV GATATC 1 cut(s) 815
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 3 cut(s) 23, 483, 611
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 5 cut(s) 33, 136, 538, 756, 886
FatI CATG 5 cut(s) 29, 132, 534, 752, 882
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 452
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 2 cut(s) 294, 959
FokI GGATG 3 cut(s) 344, 959, 980
FriOI GRGCYC 3 cut(s) 23, 483, 611
Fsp4HI GCNGC 2 cut(s) 294, 959
FspBI CTAG 3 cut(s) 222, 362, 725
GlaI GCGC 2 cut(s) 6, 410
GluI GCNGC 2 cut(s) 294, 959
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 49, 638
HapII CCGG 1 cut(s) 46
HhaI GCGC 2 cut(s) 7, 411
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 33, 136, 538, 756, 886
Hin6I GCGC 2 cut(s) 5, 409
HinP1I GCGC 2 cut(s) 5, 409
HinfI GANTC 2 cut(s) 374, 441
HpaII CCGG 1 cut(s) 46
HphI GGTGA 6 cut(s) 65, 91, 182, 427, 635, 776
Hpy166II GTNNAC 1 cut(s) 937
Hpy188I TCNGA 5 cut(s) 18, 273, 396, 526, 1000
Hpy188III TCNNGA 5 cut(s) 112, 535, 725, 965, 1010
Hpy8I GTNNAC 1 cut(s) 937
HpyAV CCTTC 2 cut(s) 563, 803
HpyCH4III ACNGT 2 cut(s) 545, 869
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 398
HpyF3I CTNAG 5 cut(s) 276, 393, 575, 894, 997
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 33, 136, 538, 756, 886
HspAI GCGC 2 cut(s) 5, 409
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 6 cut(s) 279, 351, 471, 625, 674, 897
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 232, 614
Lsp1109I GCAGC 2 cut(s) 280, 970
LweI GCATC 2 cut(s) 379, 830
MaeI CTAG 3 cut(s) 222, 362, 725
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 433, 539, 869
MalI GATC 6 cut(s) 281, 353, 473, 627, 676, 899
MboI GATC 6 cut(s) 279, 351, 471, 625, 674, 897
MboII GAAGA 6 cut(s) 5, 92, 130, 398, 539, 578
MflI RGATCY 1 cut(s) 897
MhlI GDGCHC 4 cut(s) 23, 483, 611, 994
MluCI AATT 2 cut(s) 457, 984
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 210
MseI TTAA 5 cut(s) 60, 237, 261, 348, 513
MslI CAYNNNNRTG 1 cut(s) 28
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 3 cut(s) 77, 153, 493
MssI GTTTAAAC 1 cut(s) 514
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 3 cut(s) 77, 153, 493
MwoI GCNNNNNNNGC 2 cut(s) 299, 398
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 452
NdeII GATC 6 cut(s) 279, 351, 471, 625, 674, 897
NlaIII CATG 5 cut(s) 33, 136, 538, 756, 886
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 433, 869
NspI RCATGY 3 cut(s) 136, 756, 886
PaeI GCATGC 1 cut(s) 756
PagI TCATGA 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 143
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 374, 441
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 2 cut(s) 295, 960
PluTI GGCGCC 1 cut(s) 8
PmeI GTTTAAAC 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 261
Psp124BI GAGCTC 2 cut(s) 23, 611
Psp6I CCWGG 3 cut(s) 75, 151, 491
PspGI CCWGG 3 cut(s) 75, 151, 491
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 146, 203, 636
PstI CTGCAG 1 cut(s) 654
PstNI CAGNNNCTG 2 cut(s) 158, 964
PsuI RGATCY 1 cut(s) 897
RsaI GTAC 2 cut(s) 953, 982
RsaNI GTAC 2 cut(s) 952, 981
RseI CAYNNNNRTG 1 cut(s) 28
SacI GAGCTC 2 cut(s) 23, 611
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 5 cut(s) 60, 237, 261, 348, 513
SatI GCNGC 2 cut(s) 294, 959
Sau3AI GATC 6 cut(s) 279, 351, 471, 625, 674, 897
Sau96I GGNCC 3 cut(s) 146, 203, 636
ScaI AGTACT 1 cut(s) 953
ScrFI CCNGG 3 cut(s) 77, 153, 493
SduI GDGCHC 4 cut(s) 23, 483, 611, 994
SfaNI GCATC 2 cut(s) 379, 830
SfcI CTRYAG 2 cut(s) 650, 690
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 146, 203
SmiMI CAYNNNNRTG 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 403, 1008
SmoI CTYRAG 2 cut(s) 403, 1008
SphI GCATGC 1 cut(s) 756
Sse9I AATT 2 cut(s) 457, 984
SsiI CCGC 3 cut(s) 128, 857, 944
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 3 cut(s) 222, 362, 725
SstI GAGCTC 2 cut(s) 23, 611
StyD4I CCNGG 3 cut(s) 75, 151, 491
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 545, 869
TaiI ACGT 1 cut(s) 69
TaqI TCGA 3 cut(s) 377, 771, 846
TasI AATT 2 cut(s) 457, 984
TatI WGTACW 2 cut(s) 951, 980
TfiI GAWTC 2 cut(s) 374, 441
Tru1I TTAA 5 cut(s) 60, 237, 261, 348, 513
Tru9I TTAA 5 cut(s) 60, 237, 261, 348, 513
TscAI CASTG 2 cut(s) 163, 874
TseFI GTSAC 2 cut(s) 433, 869
TseI GCWGC 2 cut(s) 293, 958
Tsp45I GTSAC 2 cut(s) 433, 869
TspDTI ATGAA 2 cut(s) 439, 579
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 2 cut(s) 163, 874
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 146, 203
VspI ATTAAT 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 3 cut(s) 136, 756, 886
XmiI GTMKAC 1 cut(s) 936
XspI CTAG 3 cut(s) 222, 362, 725
ZrmI AGTACT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.